Re: dolfin 1.5.0 and OS X 10.9

2015-01-27 Thread Sean Farley

Gideon Simpson writes:

> On one my machines I still have 10.9 installed and with the recent update to 
> dolfin (which works fine on my 10.10 machine), I now get errors during the 
> build: 
>
> _opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function
>  && /opt/local/bin/swig -python -module function -shadow -modern -modernargs 
> -fastdispatch -fvirtual -nosafecstrings -noproxydel -fastproxy -fastinit 
> -fastunpack -fastquery -nobuildnone -Iinclude/swig -DBOOST_UBLAS_NDEBUG 
> -DDOLFIN_SIZE_T=8 -DDOLFIN_LA_INDEX_SIZE=4 -DHAS_UMFPACK -DHAS_CHOLMOD 
> -DHAS_ZLIB -DHAS_MPI -DHAS_QT4 -DHAS_VTK -DNUMPY_VERSION_MAJOR=1 
> -DNUMPY_VERSION_MINOR=8 -DNUMPY_VERSION_MICRO=2 
> -DNPY_NO_DEPRECATED_API=NPY_1_8_API_VERSION -outdir 
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function
>  -c++ 
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build
>  -I/opt/local/include -I/opt/local/include/QtGui -I/opt/
 lo
>  cal/include/QtCore -I/opt/local/include/vtk-6.1 -I/usr/include/python2.7 
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0
>  -I/opt/local/include/libxml2 
> -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include 
> -I/opt/local/include/mpich-mp -I/opt/local/include/eigen3 
> -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include
>  
> -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7
>  -o 
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function/modulePYTHON_wrap.cxx
>  
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function/module.i
> :info:build 
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/la/module.i:137:
>  Error: Unable to find 'dolfin/swig/la/docstrings.i'
> :info:build 
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/la/module.i:138:
>  Error: Unable to find 'dolfin/swig/nls/docstrings.i'
> :info:build make[2]: *** [dolfin/swig/modules/la/modulePYTHON_wrap.cxx] Error 
> 1
> :info:build make[2]: Leaving directory 
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build'
> :info:build make[1]: *** [dolfin/swig/modules/la/CMakeFiles/_la.dir/all] 
> Error 2
> :info:build make[1]: *** Waiting for unfinished jobs
> :info:build 
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/common/module.i:78:
>  Error: Unable to find 'dolfin/swig/common/docstrings.i'
> :info:build 
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/common/module.i:79:
>  Error: Unable to find 'dolfin/swig/parameter/docstrings.i'
> :info:build 
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/common/module.i:80:
>  Error: Unable to find 'dolfin/swig/log/docstrings.i'
> :info:build make[2]: *** [dolfin/swig/modules/common/modulePYTHON_wrap.cxx] 
> Error 1
> :info:build make[2]: Leaving directory 
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build'
> :info:build make[1]: *** 
> [dolfin/swig/modules/common/CMakeFiles/_common.dir/all] Error 2
> :info:build 
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/mesh/module.i:160:
>  Error: Unable to find 'dolfin/swig/mesh/docstrings.i'
> :info:build 
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/mesh/module.i:161:
>  Error: Unable to find 'dolfin/swig/generation/docstrings.i'
> :info:build 
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/d

dolfin 1.5.0 and OS X 10.9

2015-01-27 Thread Gideon Simpson
On one my machines I still have 10.9 installed and with the recent update to 
dolfin (which works fine on my 10.10 machine), I now get errors during the 
build: 

_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function
 && /opt/local/bin/swig -python -module function -shadow -modern -modernargs 
-fastdispatch -fvirtual -nosafecstrings -noproxydel -fastproxy -fastinit 
-fastunpack -fastquery -nobuildnone -Iinclude/swig -DBOOST_UBLAS_NDEBUG 
-DDOLFIN_SIZE_T=8 -DDOLFIN_LA_INDEX_SIZE=4 -DHAS_UMFPACK -DHAS_CHOLMOD 
-DHAS_ZLIB -DHAS_MPI -DHAS_QT4 -DHAS_VTK -DNUMPY_VERSION_MAJOR=1 
-DNUMPY_VERSION_MINOR=8 -DNUMPY_VERSION_MICRO=2 
-DNPY_NO_DEPRECATED_API=NPY_1_8_API_VERSION -outdir 
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function
 -c++ 
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build
 -I/opt/local/include -I/opt/local/include/QtGui -I/opt/lo
 cal/include/QtCore -I/opt/local/include/vtk-6.1 -I/usr/include/python2.7 
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0
 -I/opt/local/include/libxml2 
-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include 
-I/opt/local/include/mpich-mp -I/opt/local/include/eigen3 
-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include
 
-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 
-o 
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function/modulePYTHON_wrap.cxx
 
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function/module.i
:info:build 
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/la/module.i:137:
 Error: Unable to find 'dolfin/swig/la/docstrings.i'
:info:build 
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/la/module.i:138:
 Error: Unable to find 'dolfin/swig/nls/docstrings.i'
:info:build make[2]: *** [dolfin/swig/modules/la/modulePYTHON_wrap.cxx] Error 1
:info:build make[2]: Leaving directory 
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build'
:info:build make[1]: *** [dolfin/swig/modules/la/CMakeFiles/_la.dir/all] Error 2
:info:build make[1]: *** Waiting for unfinished jobs
:info:build 
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/common/module.i:78:
 Error: Unable to find 'dolfin/swig/common/docstrings.i'
:info:build 
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/common/module.i:79:
 Error: Unable to find 'dolfin/swig/parameter/docstrings.i'
:info:build 
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/common/module.i:80:
 Error: Unable to find 'dolfin/swig/log/docstrings.i'
:info:build make[2]: *** [dolfin/swig/modules/common/modulePYTHON_wrap.cxx] 
Error 1
:info:build make[2]: Leaving directory 
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build'
:info:build make[1]: *** 
[dolfin/swig/modules/common/CMakeFiles/_common.dir/all] Error 2
:info:build 
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/mesh/module.i:160:
 Error: Unable to find 'dolfin/swig/mesh/docstrings.i'
:info:build 
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/mesh/module.i:161:
 Error: Unable to find 'dolfin/swig/generation/docstrings.i'
:info:build 
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/mesh/module.i:162:
 Error: Unable to find 'dolfin/swig/geometry/docstrings.i'
:info:build 
/opt/local/var/macports/build/_opt_local_var_m