Jim,
I have modified your LogNorm, added it to colors.py, made some changes
to colorbar.py, and added a stripped-down version of your pcolor_log.py
to the examples directory. If you update your mpl from svn, then I
think you will find that pcolor_log now works the way you expected it to
originally, with the colorbar automatically supporting the log color scale.
Eric
JIM MacDonald wrote:
> Hi Eric,
>
> Thanks for your reply. It made me realise a few things
>> > But when I add a colorbar it goes wrong. The colorbar is labelled with
>> > the log of the values, rather
>> > than values, and the colour only fills the top third of the colorbar.
>>
>> In the absence of additional kwargs, colorbar uses norm.vmin and
>> norm.vmax to determine the limits of the colorbar, and it uses a default
>> formatter. It has no way of knowing that you have taken the log of your
>> original values.
> Yes of course there is in inconsistency in my LogNorm class. norm.vmax
> will return the log of the maximum, when logically it should return
> the max of the actual maximum. I've modified my example to take this
> into account. see attached (and updated version online).
>
>
>> Colorbar will need some kwargs, at the very least. The "format" kwarg,
>> for example, can be used to pass in a Formatter instance so that a label
>> is 10^-3 instead of -3.
> Ah I'd not discovered Formatters yet. But this does give a good solution.
> If I instead do a pcolor of the log of my data, and then use a
> FormatStrFormatter as you surgested:
>
> pcolor(X,Y,log10(Z1),shading='flat')
> colorbar(format=FormatStrFormatter('$10^{%d}$'))
>
> I get exactly what I want :-) Its not the most intuitive way to do it,
> but it works and I can't see any major drawbacks.
>
>> I am not sure why only the top is colored in your example--it might be a
>> bug or it might be an indication that additional kwargs are needed. I
>> am reasonably sure there is a simple solution, but I can't look at it
>> any more right now--maybe I can get back to it this evening.
>
> I'm pretty sure the reason only the top was coloured is to do in the
> inconsistency I described above. Once I fixed that the colorbar is
> fine except that it is not on a log scale. But of course it can't know
> that it is suppost to be on a log scale! I tried to do:
>
> gca().axes[1].set_ylim((1e-5,1))
> gca().axes[1].set_yscale('log')
>
> but that doesn't work. I get a load of errors :
>
> exceptions.ValueErrorTraceback (most
> recent call last)
>
> /usr/lib/python2.4/site-packages/matplotlib/backends/backend_gtk.py in
> expose_event(self, widget, event)
>282 x, y, w, h = self.allocation
>283 self._pixmap_prepare (w, h)
> --> 284 self._render_figure(self._pixmap, w, h)
>285 self._need_redraw = False
>286
>
> /usr/lib/python2.4/site-packages/matplotlib/backends/backend_gtkagg.py
> in _render_figure(self, pixmap, width, height)
> 71 def _render_figure(self, pixmap, width, height):
> 72 if DEBUG: print 'FigureCanvasGTKAgg.render_figure'
> ---> 73 FigureCanvasAgg.draw(self)
> 74 if DEBUG: print 'FigureCanvasGTKAgg.render_figure
> pixmap', pixmap
> 75 #agg_to_gtk_drawable(pixmap, self.renderer._renderer, None)
>
> /usr/lib/python2.4/site-packages/matplotlib/backends/backend_agg.py in
> draw(self)
>390
>391 renderer = self.get_renderer()
> --> 392 self.figure.draw(renderer)
>393
>394 def get_renderer(self):
>
> /usr/lib/python2.4/site-packages/matplotlib/figure.py in draw(self,
> renderer)
>542
>543 # render the axes
> --> 544 for a in self.axes: a.draw(renderer)
>545
>546 # render the figure text
>
> /usr/lib/python2.4/site-packages/matplotlib/axes.py in draw(self,
> renderer, inframe)
> 1061
> 1062 for zorder, i, a in dsu:
> -> 1063 a.draw(renderer)
> 1064
> 1065 self.transData.thaw() # release the lazy objects
>
> /usr/lib/python2.4/site-packages/matplotlib/patches.py in draw(self,
> renderer)
>163
>164 verts = self.get_verts()
> --> 165 tverts = self._transform.seq_xy_tups(verts)
>166
>167 renderer.draw_polygon(gc, rgbFace, tverts)
>
> ValueError: Domain error on nonlinear Transformation::seq_xy_tups
> operator()(thisx, thisy)
>
> As for how to solve the problem properly. Matlab allows one to set to
> caxis scale to log. Maybe colorbar could detect that the norm instance
> was an instance of LogNorm and scale the yaxis logarithmicly. Or would
> it be better to put a scale={'log','linear'} kwarg into colorbar()?
>
> Thanks again for your help.
>
> cheers
>
> JIM
> ---
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