Re: [Matplotlib-users] who (F/OSS science) uses matplotlib?
On Wed, Jun 6, 2012 at 8:01 AM, Guillaume Gay wrote: > Le 05/06/2012 16:25, Tom Dimiduk a écrit : >> Is any of this stuff I should be looking to upstream or split off into >> the start of a scientific imaging library for python? > Have you had a look at skimage https://github.com/scikits-image ? > > > BTW I uses matplotlib (and the whole pylab suite) in my projects for all > the visualisation. > A (peer reviewed published) example here: > https://github.com/Kinetochore-segregation > > Best > > Guillaume The Spyder (http://code.google.com/p/spyderlib/) python-based matlab clone uses matplotlib for plotting. Python(X,Y) (http://code.google.com/p/pythonxy/) is an integrated windows python release that includes a ton of science, engineering, and mathematics-oriented python packages, including matplotlib. Numpy uses small bits of matplotlib when building the documentation, but I don't know if that counts (I think it may even use it for building matplotlib-related parts of the documentation, in which case it really doesn't count). I know someone is working on a pure python backend for the Cantor advanced mathematics software (http://edu.kde.org/cantor/). The project only started recently, however (see http://blog.filipesaraiva.info/?p=779 ). There is also already a sage backend for Cantor, which of course uses matplotlib for plotting because that is what sage uses. -Todd -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] who (F/OSS science) uses matplotlib?
Le 05/06/2012 16:25, Tom Dimiduk a écrit : > Is any of this stuff I should be looking to upstream or split off into > the start of a scientific imaging library for python? Have you had a look at skimage https://github.com/scikits-image ? BTW I uses matplotlib (and the whole pylab suite) in my projects for all the visualisation. A (peer reviewed published) example here: https://github.com/Kinetochore-segregation Best Guillaume -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] who (F/OSS science) uses matplotlib?
On Tue, Jun 5, 2012 at 10:18 AM, Eric Firing wrote: > In oceanography: it is used in the shipboard ADCP data acquisition and > processing systems, presently installed on 20 ships. Suggestion: let's have for mpl something like what we created long ago for IPython, an official page listing projects that use it (and btw, if your project uses IPython as a component/library and you're not already listed here, please do so!): http://wiki.ipython.org/Projects_using_IPython While I'm not a huge fan of wikis for everything, for this it's actually a good solution, as it's very low overhead for others to update. And it comes in handy as an official list whenever we do presentations about IPython, to show that it's actually useful for something. I don't think we have a MPL wiki, but if it's just for a page or two we could just use the one at github. Cheers, f -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] who (F/OSS science) uses matplotlib?
On 06/03/2012 01:41 PM, Kevin Hunter wrote: > Hullo List, > > I've just spent 20 minutes of searching with various terms and no luck > finding even one answer: What open source projects use matplotlib? > > I'm especially interested in open source /science/ projects that use > matplotlib. > > I got excited when I saw scienceoss.com, but I still could not find a > link to an actual science project, much less an open source one. > > Many thanks for any pointers! > > Kevin In oceanography: it is used in the shipboard ADCP data acquisition and processing systems, presently installed on 20 ships. http://currents.soest.hawaii.edu/docs/adcp_doc/index.html http://currents.soest.hawaii.edu/uhdas_fromships.html Eric -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] who (F/OSS science) uses matplotlib?
At 10:25am -0400 Tue, 05 Jun 2012, Tom Dimiduk wrote: > On 06/05/2012 10:14 AM, Kevin Hunter wrote: >> At 10:47pm -0400 Sun, 03 Jun 2012, Tom Dimiduk wrote: >>> Very few people outside my group use it at the moment, but that >>> looks to be changing at least a bit. I will hopefully get a paper >>> out about the code by the end of the summer. >> >> I'm in a similar boat with the research on which I'm working, paper >> and all. I don't know if folks will end up using it or not, but at >> least it is available (github), if not well advertised to the >> (decidedly small) niche of folks who would be interested. > > What is your project? Heh. It didn't occur to me that I should answer my own question! :-) http://temoaproject.org/ Briefly an energy-economy optimization (EEO) model and surrounding tools. If you just learned what that means, well ... welcome to the (decidedly small) niche! > Like probably anyone in this situation, I have written a bunch of little > convenience tools working with images, a simple matplotlib based gui to > provide richer imshow image interaction (clicking to get pixel > coordinates), more user friendly wrappers around scipy functions to do > what is at least the most common case for us, and things of that sort. > > Is any of this stuff I should be looking to upstream or split off into > the start of a scientific imaging library for python? Potentially. I'm haven't explored that area for my research yet, but I *do* plan for a GUI. (Oh, but if plans were worth a nickel ...) For the types of analysis one generally (well, currently, anyway) does with EEO models, static graphics seem to be the method du jour. Thus, I'm not to the point of manipulating graphics yet, just generating various y(x) graphs with my scripts for later consumption. Unfortunately, what we (I) do with our various ad-hoc scripts is not at all integrated yet, so we are currently just a (thankful) consumer. Cheers, Kevin -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] who (F/OSS science) uses matplotlib?
If I'm not wrong, the python packages at the Space Telescope Institute use matplotlib extensively for astronomical use (http://www.stsci.edu/institute/software_hardware/pyraf), and provide a hook to the IRAF image libraries (http://www.stsci.edu/institute/software_hardware/pyraf). Too much to briefly summarize. I use matplotlib myself for the calibration and data reduction of the Swift UVOT grism spectra (which is Astronomy). Paul On Tue, Jun 5, 2012 at 3:42 PM, Youngung Jeong wrote: > I use matplotlib for my pole figure plotting. Pole figure is a 2D graphical > method to represent the 3D crystallographic orientation of various crystal > structures. And like most of scientific small tools, though I didn't mean to > make it private, I have been the only user of my own program... > Anyway, anyone is welcome to the git repo: > > https://github.com/youngung/PoleFigure.git > > > Youngung Jeong, 정영웅 > > > > > On Tue, Jun 5, 2012 at 8:31 AM, Alejandro Weinstein > wrote: >> >> On Tue, Jun 5, 2012 at 8:12 AM, Kevin Hunter wrote: >> > At 8:15pm -0400 Sun, 03 Jun 2012, Josef wrote: >> >> On Sun, Jun 3, 2012 at 7:41 PM, Kevin Hunter wrote: >> >>> I've just spent 20 minutes of searching with various terms and no luck >> >>> finding even one answer: What open source projects use matplotlib? >> > >> >> Maybe scanning the Debian required and recommended dependencies might >> >> be informative. >> >> (I wouldn't know how to do it.) >> > >> >> Along the same lines, it is possible to search for repositories at >> github that use Matplotlib. For example: >> >> http://bit.ly/Liibvq >> >> gives 72 repositories (there might be some duplicates). >> >> Alejandro. >> >> >> -- >> Live Security Virtual Conference >> Exclusive live event will cover all the ways today's security and >> threat landscape has changed and how IT managers can respond. Discussions >> will include endpoint security, mobile security and the latest in malware >> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >> ___ >> Matplotlib-users mailing list >> Matplotlib-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/matplotlib-users > > > > -- > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > ___ > Matplotlib-users mailing list > Matplotlib-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/matplotlib-users > -- * * * * * * * * http://www.mssl.ucl.ac.uk/~npmk/ * * * * Dr. N.P.M. Kuin (n...@mssl.ucl.ac.uk) phone +44-(0)1483 (prefix) -204256 (work) -276110 (home) mobile +44(0)7806985366 skype ID: npkuin Mullard Space Science Laboratory – University College London – Holmbury St Mary – Dorking – Surrey RH5 6NT– U.K. -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] who (F/OSS science) uses matplotlib?
I use matplotlib for my pole figure plotting. Pole figure is a 2D graphical method to represent the 3D crystallographic orientation of various crystal structures. And like most of scientific small tools, though I didn't mean to make it private, I have been the only user of my own program... Anyway, anyone is welcome to the git repo: https://github.com/youngung/PoleFigure.git * Youngung Jeong, 정영웅* On Tue, Jun 5, 2012 at 8:31 AM, Alejandro Weinstein < alejandro.weinst...@gmail.com> wrote: > On Tue, Jun 5, 2012 at 8:12 AM, Kevin Hunter wrote: > > At 8:15pm -0400 Sun, 03 Jun 2012, Josef wrote: > >> On Sun, Jun 3, 2012 at 7:41 PM, Kevin Hunter wrote: > >>> I've just spent 20 minutes of searching with various terms and no luck > >>> finding even one answer: What open source projects use matplotlib? > > > >> Maybe scanning the Debian required and recommended dependencies might > >> be informative. > >> (I wouldn't know how to do it.) > > > > Along the same lines, it is possible to search for repositories at > github that use Matplotlib. For example: > > http://bit.ly/Liibvq > > gives 72 repositories (there might be some duplicates). > > Alejandro. > > > -- > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > ___ > Matplotlib-users mailing list > Matplotlib-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/matplotlib-users > -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] who (F/OSS science) uses matplotlib?
On 06/05/2012 10:14 AM, Kevin Hunter wrote: > At 10:47pm -0400 Sun, 03 Jun 2012, Tom Dimiduk wrote: >> Very few people outside my group use it at the moment, but that looks >> to be changing at least a bit. I will hopefully get a paper out about >> the code by the end of the summer. > > I'm in a similar boat with the research on which I'm working, paper and > all. I don't know if folks will end up using it or not, but at least it > is available (github), if not well advertised to the (decidedly small) > niche of folks who would be interested. > What is your project? Like probably anyone in this situation, I have written a bunch of little convenience tools working with images, a simple matplotlib based gui to provide richer imshow image interaction (clicking to get pixel coordinates), more user friendly wrappers around scipy functions to do what is at least the most common case for us, and things of that sort. Is any of this stuff I should be looking to upstream or split off into the start of a scientific imaging library for python? -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] who (F/OSS science) uses matplotlib?
On 6/3/12 6:41 PM, Kevin Hunter wrote: > I'm especially interested in open source/science/ projects that use > matplotlib. Sage (sagemath.org) uses matplotlib for nearly all its 2d graphics. Jason -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] who (F/OSS science) uses matplotlib?
At 3:31pm -0400 Mon, 04 Jun 2012, Michael Droettboom wrote: > This is one of the big challenges of open science right now, in my > opinion, is how to better share the *applications* for science > rather than just the *libraries*. This is a good point. I've had similar observations but haven't been able to voice this particular facet, and certainly not so succinctly. One thought I had, assuming John Hunter et al. would be open to it, is basically having a "Who uses matplotlib?" section on the website. Good for one-off cases like my question two days ago, and also good for general project evangelism. Cheers, Kevin -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] who (F/OSS science) uses matplotlib?
At 10:47pm -0400 Sun, 03 Jun 2012, Tom Dimiduk wrote: > Very few people outside my group use it at the moment, but that looks > to be changing at least a bit. I will hopefully get a paper out about > the code by the end of the summer. I'm in a similar boat with the research on which I'm working, paper and all. I don't know if folks will end up using it or not, but at least it is available (github), if not well advertised to the (decidedly small) niche of folks who would be interested. Cheers, Kevin -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] who (F/OSS science) uses matplotlib?
At 8:15pm -0400 Sun, 03 Jun 2012, Josef wrote: > On Sun, Jun 3, 2012 at 7:41 PM, Kevin Hunter wrote: >> I've just spent 20 minutes of searching with various terms and no luck >> finding even one answer: What open source projects use matplotlib? > Maybe scanning the Debian required and recommended dependencies might > be informative. > (I wouldn't know how to do it.) This is a good idea. Heh, one that requires more time investment than I was hoping after a simple search, but a good idea nonetheless. Thanks, Kevin -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
[Matplotlib-users] who (F/OSS science) uses matplotlib?
Hullo List, I've just spent 20 minutes of searching with various terms and no luck finding even one answer: What open source projects use matplotlib? I'm especially interested in open source /science/ projects that use matplotlib. I got excited when I saw scienceoss.com, but I still could not find a link to an actual science project, much less an open source one. Many thanks for any pointers! Kevin -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
