Re: [mitk-users] DWI import problem
Dear Marek, Are you opening the spherical harmonic data (the csf result) or raw dwi data? Where does it come from? Could you send me a sample dataset? I am on vacation but I will have a look next week. Cheers, Peter Von: Marek Dostál <424...@mail.muni.cz> Gesendet: Donnerstag, 4. Juni 2020 13:06 An: mitk-users@lists.sourceforge.net; mitk-users-requ...@lists.sourceforge.net Betreff: [mitk-users] DWI import problem Dear MITK users, when I open DWI data ( *.nii.gz) CSF has negative values (aprox. -24000). When I open the same file in ITK-SNAP there voxels have normal values (2000 - 15000) in whole volume. Could you help me why? Thank you Best regards, Mark ___ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users ___ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users
Re: [mitk-users] DWI import problem
Dear Marek, Are you opening the spherical harmonic data (the csf result) or raw dwi data? Where does it come from? Could you send me a sample dataset? I am on vacation but I will have a look next week. Cheers, Peter Von: Marek Dostál <424...@mail.muni.cz> Gesendet: Donnerstag, 4. Juni 2020 13:06 An: mitk-users@lists.sourceforge.net; mitk-users-requ...@lists.sourceforge.net Betreff: [mitk-users] DWI import problem Dear MITK users, when I open DWI data ( *.nii.gz) CSF has negative values (aprox. -24000). When I open the same file in ITK-SNAP there voxels have normal values (2000 - 15000) in whole volume. Could you help me why? Thank you Best regards, Mark ___ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users ___ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users
[mitk-users] QmitkRenderWindowWidget design flaw: Setting datastorage globally.
Hello, It's been a month since I started to develop an application using MITK as a toolkit. I need to render two independent 3D windows, to achieve this I choose the QmitkRenderWindowWidget, but inside QmitkRenderWindowWidget.cpp we have the method: (1) void QmitkRenderWindowWidget::InitializeGUI(); This is a private method called by the constructor and inside it we have this line of code: (2) mitk::RenderingManager::GetInstance()->SetDataStorage(m_DataStorage); This code sets m_DataStorage's content globally, and at the moment we declare QmitkRenderWindowWidget, all other rendering windows are modified. The behavior seems to be a design flaw, because QmitkRenderWindowWidget has a method: (3) void QmitkRenderWindowWidget::SetDataStorage(mitk::DataStorage* dataStorage); I can't tell for sure, but this method seems to set the datastorage only for the current QmitkRenderWindowWidget. So there is no need for (2). Here is the next thing that took my attention: QmitkStdMultiWidget inherits QmitkAbstractMultiWidget, the last one has a method: (4) void QmitkStdMultiWidget::SetDataStorage(mitk::DataStorage* dataStorage); QmitkStdMultiWidget has four rendering widgets, when calling method (4), there are four callings for method (3), one for each rendering widget, but their constructors had already called four times the method (2), and this last method has messed up every other rendering window in the current application. For these reasons, I believe method (2) should be removed as it is there probably by mistake. Also, the algorithms for widgets initialization doesn't appear to consider method (2) existence. I'd welcome any thoughts on this. ___ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users
[mitk-users] DWI import problem
Dear MITK users, when I open DWI data ( *.nii.gz) CSF has negative values (aprox. -24000). When I open the same file in ITK-SNAP there voxels have normal values (2000 - 15000) in whole volume. Could you help me why? Thank you Best regards, Mark ___ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users
