Re: Stopping a Pointless C Compiler Warning

2012-01-10 Thread Fields, Christopher J
That message originates from Activestate's ppm; see this link:

http://community.activestate.com/node/7553

chris

On Jan 10, 2012, at 8:36 PM, John M. Gamble wrote:

> I don't know which upgrade brought this, but currently when I use Build.PL
> (and the resulting Build files) I get (in reverse video no less) the
> message:
> 
> It looks like you don't have a C compiler on your PATH, so you will not be
> able to compile C or XS extension modules.  You can install GCC from the
> MinGW package using the Perl Package Manager by running:
> 
>ppm install MinGW
> 
> I've become somewhat numb to it, but it's a completely pointless and
> unhelpful message, since this machine I'm working on will never develop
> anything in C. I haven't been able to find anything in Module::Build
> documentation that tells me how to tell it that this is a pure Perl
> module. Can anyone steer me in the right direction?
> 
> I'm using ActiveState perl version 5.14.1, and Module::Build version 0.3800.
> 
> Thanks,
> -john
> 

Chris Fields
Senior Research Scientist
National Center for Supercomputing Applications
Institute for Genomic Biology
University of Illinois at Urbana-Champaign



Re: Possible bug?

2011-10-18 Thread Fields, Christopher J
On Oct 18, 2011, at 11:23 AM, David Golden wrote:

> On Tue, Oct 18, 2011 at 9:36 AM, Fields, Christopher J
>  wrote:
>> https://github.com/bioperl/bioperl-network
>> 
>> I can work on a minimal test case.  If needed I can also fork the specific 
>> github code and try to weed out the problem.
> 
> No need to do the test case.  I was able to load the bioperl
> dependency chain and see it directly.  :-)
> 
> I have two reactions:
> 
> (a) Module::Build is doing it wrong -- in that it will "normalize" an
> undefined version to "0" and leave it in.  The CPAN::Meta::Spec v2
> says that the version metadata should only exist if a $VERSION string
> exists, but Module::Build does not produce v2 metadata and the v1.4
> spec doesn't say anything about the subkeys of "provides".
> 
> (b) PAUSE is being too nitpicky.  An undefined $VERSION is effectively
> treated as a "0" in code, so it doesn't really matter too much if the
> metadata says "0" or omits the key.
> 
> Nevertheless, in a battle between M::B and PAUSE, clearly PAUSE should
> win.  (I get to wear both hats: I'm PAUSE admin *and* M::B
> co/ex-maintainer, so I'm indifferent.)

Andreas fixed this for PAUSE and the dist successfully reindexed, but it's 
definitely worth fixing in M::B as well (the indexing issue was raised on 
modules@perl as well).

> I'll commit a fix to the repo and if/when a new M::B maintainer
> volunteers (or I'm forced by p5p to do another release), then it will
> go live.

Thanks!

> I do encourage adding $VERSION to the bioperl code (it looks like
> you're heading down the dzil route -- which can solve that for you).
> 
> -- David

Yep, we're splitting bioperl up and using dzil to push releases to CPAN, so 
each dist will require a specific VERSION.

chris



Re: Possible bug?

2011-10-18 Thread Fields, Christopher J
On Oct 18, 2011, at 8:29 AM, David Golden wrote:

> 
> On Oct 18, 2011 3:39 AM, "Leon Timmermans"  wrote:
> >
> > On Mon, Oct 17, 2011 at 5:08 AM, Fields, Christopher J
> >  wrote:
> > > This appears to be due to the version for the modules being set to '0' in 
> > > META.yml/json instead of not being defined (yes, we know this is a 
> > > problem with the bioperl code, but Andreas indicated that lack of a 
> > > module version probably should not default to '0'.  Any reason this is 
> > > occurring?
> >
> > Meta 2.0 is quite clear it should be absent if no version is detected.
> > Actually that is what Module::Build appears to be trying to do, I'm
> > not sure why it fails.
> 
> Could we please get a minimal test case that demonstrates the error?
> 
> Or even just a repo URL for the code in question?

https://github.com/bioperl/bioperl-network

I can work on a minimal test case.  If needed I can also fork the specific 
github code and try to weed out the problem.

> Thanks,
> 
> David

chris

Possible bug?

2011-10-16 Thread Fields, Christopher J
All,

I have been attempting to push a release to CPAN for a few bioperl 
sub-distributions and ran into an odd issue where the distribution was not 
being indexed in CPAN, documented here:

http://www.nntp.perl.org/group/perl.modules/2011/10/msg78021.html

This appears to be due to the version for the modules being set to '0' in 
META.yml/json instead of not being defined (yes, we know this is a problem with 
the bioperl code, but Andreas indicated that lack of a module version probably 
should not default to '0'.  Any reason this is occurring?

chris