[GitHub] incubator-rya issue #199: RYA-316 Long OBJ string

[isper3at]

Github user isper3at commented on the issue:

https://github.com/apache/incubator-rya/pull/199
  
sure, shouldn't be an issue


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[jira] [Commented] (RYA-316) Long LineStrings break MongoDB ingest

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-316?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16117781#comment-16117781
 ] 

ASF GitHub Bot commented on RYA-316:


Github user isper3at commented on the issue:

https://github.com/apache/incubator-rya/pull/199
  
sure, shouldn't be an issue


> Long LineStrings break MongoDB ingest
> -
>
> Key: RYA-316
> URL: https://issues.apache.org/jira/browse/RYA-316
> Project: Rya
>  Issue Type: Bug
>  Components: dao
>Reporter: Aaron Mihalik
>Assignee: Andrew Smith
>
> MongoDB will reject statements they contain very long linestrings.  
> Basically, the mongodb index key is limited to 1024 chars, so the insert will 
> fail if the literal is longer.
> [Here is some example 
> code|https://github.com/amihalik/rya-mongo-debugging/blob/master/src/main/java/com/github/amihalik/rya/mongo/debugging/linestring/LoadLineString.java].
>   I think the inserts will work if you use 10 points, but fail if you use 
> linestrings with 100 points.



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[GitHub] incubator-rya issue #199: RYA-316 Long OBJ string

[amihalik]

Github user amihalik commented on the issue:

https://github.com/apache/incubator-rya/pull/199
  
@isper3at Since this was so straightforward, can you go ahead and hash the 
S and O as well?


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[GitHub] incubator-rya pull request #200: Added Access-Control-Allow-Origin * header ...

[Ejgood21]

GitHub user Ejgood21 opened a pull request:

https://github.com/apache/incubator-rya/pull/200

Added Access-Control-Allow-Origin * header to both response objects


## Description
>What Changed?
[Brief Description of what changed]

### Tests
>Coverage?

[Description of what tests were written]

### Links
[Jira](https://issues.apache.org/jira/browse/RYA-NUMBER)

### Checklist
- [ ] Code Review
- [ ] Squash Commits

 People To Reivew
[Add those who should review this]


You can merge this pull request into a Git repository by running:

$ git pull https://github.com/Ejgood21/incubator-rya master

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/incubator-rya/pull/200.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #200


commit 86f2275c1907fc84844a93ae8c84f7857f356a7f
Author: Ejgood21 
Date:   2017-08-07T20:36:50Z

Merge pull request #3 from apache/master

Merging master into ejgood21 fork

commit 37ba169774eb466798eec79dbadf44127500e2e6
Author: Evan 
Date:   2017-08-07T21:15:16Z

Adding Access-Control-Allow-Origin * header to both response objects




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[GitHub] incubator-rya issue #200: Added Access-Control-Allow-Origin * header to both...

[asfgit]

Github user asfgit commented on the issue:

https://github.com/apache/incubator-rya/pull/200
  
Can one of the admins verify this patch?


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[jira] [Commented] (RYA-250) Smart URI avoid data duplication

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-250?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16117113#comment-16117113
 ] 

ASF GitHub Bot commented on RYA-250:


Github user asfgit commented on the issue:

https://github.com/apache/incubator-rya/pull/153
  

Refer to this link for build results (access rights to CI server needed): 

https://builds.apache.org/job/incubator-rya-master-with-optionals-pull-requests/365/Build
 result: FAILURE[...truncated 5.78 MB...][INFO] 
/home/jenkins/jenkins-slave/workspace/incubator-rya-master-with-optionals-pull-requests/extras/rya.export/export.accumulo/src/main/java/org/apache/rya/export/accumulo/conf/AccumuloExportConstants.java:
 Recompile with -Xlint:deprecation for details.[INFO] [INFO] --- 
maven-resources-plugin:2.7:testResources (default-testResources) @ 
rya.export.accumulo ---[INFO] Using 'UTF-8' encoding to copy filtered 
resources.[INFO] skip non existing resourceDirectory 
/home/jenkins/jenkins-slave/workspace/incubator-rya-master-with-optionals-pull-requests/extras/rya.export/export.accumulo/src/test/resources[INFO]
 Copying 3 resources[INFO] [INFO] --- maven-compiler-plugin:3.2:testCompile 
(default-testCompile) @ rya.export.accumulo ---[INFO] Changes detected - 
recompiling the module![INFO] Compiling 5 source files to 
/home/jenkins/jenkins-slave/workspace/incubator-rya-master-with-optionals-pull-requests/extras/rya.export/export.accumulo/target/test-classes[INFO]
 
/home/jenkins/jenkins-slave/workspace/incubator-rya-master-with-optionals-pull-requests/extras/rya.export/export.accumulo/src/test/java/org/apache/rya/export/accumulo/AccumuloRyaStatementStoreTest.java:
 Some input files use or override a deprecated API.[INFO] 
/home/jenkins/jenkins-slave/workspace/incubator-rya-master-with-optionals-pull-requests/extras/rya.export/export.accumulo/src/test/java/org/apache/rya/export/accumulo/AccumuloRyaStatementStoreTest.java:
 Recompile with -Xlint:deprecation for details.[INFO] [INFO] --- 
maven-surefire-plugin:2.18.1:test (default-test) @ rya.export.accumulo 
---[INFO] Surefire report directory: 
/home/jenkins/jenkins-slave/workspace/incubator-rya-master-with-optionals-pull-requests/extras/rya.export/export.accumulo/target/surefire-reports---
 T E S T S---Running 
org.apache.rya.export.api.conf.AccumuloConfigurationAdapterTestERROR: Maven JVM 
terminated unexpectedly with exit code 137Setting status of 
88a10ddea8ed7f22afd593e36901736632483f16 to FAILURE with url 
https://builds.apache.org/job/incubator-rya-master-with-optionals-pull-requests/365/
 and message: 'FAILURE 'Using context: Jenkins: clean package -Pgeoindexing



> Smart URI avoid data duplication
> 
>
> Key: RYA-250
> URL: https://issues.apache.org/jira/browse/RYA-250
> Project: Rya
>  Issue Type: Task
>  Components: dao
>Affects Versions: 3.2.10
>Reporter: Eric White
>Assignee: Eric White
> Fix For: 3.2.10
>
>
> Implement Smart URI methods for avoiding data duplication.



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[GitHub] incubator-rya issue #153: RYA-250 Smart URI avoiding data duplication

[asfgit]

Github user asfgit commented on the issue:

https://github.com/apache/incubator-rya/pull/153
  

Refer to this link for build results (access rights to CI server needed): 

https://builds.apache.org/job/incubator-rya-master-with-optionals-pull-requests/365/Build
 result: FAILURE[...truncated 5.78 MB...][INFO] 
/home/jenkins/jenkins-slave/workspace/incubator-rya-master-with-optionals-pull-requests/extras/rya.export/export.accumulo/src/main/java/org/apache/rya/export/accumulo/conf/AccumuloExportConstants.java:
 Recompile with -Xlint:deprecation for details.[INFO] [INFO] --- 
maven-resources-plugin:2.7:testResources (default-testResources) @ 
rya.export.accumulo ---[INFO] Using 'UTF-8' encoding to copy filtered 
resources.[INFO] skip non existing resourceDirectory 
/home/jenkins/jenkins-slave/workspace/incubator-rya-master-with-optionals-pull-requests/extras/rya.export/export.accumulo/src/test/resources[INFO]
 Copying 3 resources[INFO] [INFO] --- maven-compiler-plugin:3.2:testCompile 
(default-testCompile) @ rya.export.accumulo ---[INFO] Changes detected - 
recompiling the module![INFO] Compiling 5 source files to 
/home/jenkins/jenkins-slave/work
 
space/incubator-rya-master-with-optionals-pull-requests/extras/rya.export/export.accumulo/target/test-classes[INFO]
 
/home/jenkins/jenkins-slave/workspace/incubator-rya-master-with-optionals-pull-requests/extras/rya.export/export.accumulo/src/test/java/org/apache/rya/export/accumulo/AccumuloRyaStatementStoreTest.java:
 Some input files use or override a deprecated API.[INFO] 
/home/jenkins/jenkins-slave/workspace/incubator-rya-master-with-optionals-pull-requests/extras/rya.export/export.accumulo/src/test/java/org/apache/rya/export/accumulo/AccumuloRyaStatementStoreTest.java:
 Recompile with -Xlint:deprecation for details.[INFO] [INFO] --- 
maven-surefire-plugin:2.18.1:test (default-test) @ rya.export.accumulo 
---[INFO] Surefire report directory: 
/home/jenkins/jenkins-slave/workspace/incubator-rya-master-with-optionals-pull-requests/extras/rya.export/export.accumulo/target/surefire-reports---
 T E S T S
 ---Running 
org.apache.rya.export.api.conf.AccumuloConfigurationAdapterTestERROR: Maven JVM 
terminated unexpectedly with exit code 137Setting status of 
88a10ddea8ed7f22afd593e36901736632483f16 to FAILURE with url 
https://builds.apache.org/job/incubator-rya-master-with-optionals-pull-requests/365/
 and message: 'FAILURE 'Using context: Jenkins: clean package -Pgeoindexing



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[GitHub] incubator-rya issue #191: RYA-306 Remove rya.benchmark committed gen

[ejwhite922]

Github user ejwhite922 commented on the issue:

https://github.com/apache/incubator-rya/pull/191
  
I made all changes requested.  Let me know if anything else is needed.


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[jira] [Commented] (RYA-306) remove generated source from git

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-306?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16117097#comment-16117097
 ] 

ASF GitHub Bot commented on RYA-306:


Github user ejwhite922 commented on the issue:

https://github.com/apache/incubator-rya/pull/191
  
I made all changes requested.  Let me know if anything else is needed.


> remove generated source from git
> 
>
> Key: RYA-306
> URL: https://issues.apache.org/jira/browse/RYA-306
> Project: Rya
>  Issue Type: Bug
>  Components: build
>Reporter: Jeff Dasch
>Assignee: Eric White
>Priority: Trivial
>
> Several files in {{extras/rya.benchmark/src/main/gen}} get modified at 
> compile time.  They should be removed from git and configured to be created 
> in {{extras/rya.benchmark/target/generated-sources}} so they can be removed 
> by {{mvn clean}}.
> Files in question:
> {noformat}
>   modified:   extras/rya.benchmark/src/main/gen/META-INF/sun-jaxb.episode
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/ObjectFactory.java
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/Parameters.java
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/QueriesBenchmarkConf.java
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/Rya.java
> {noformat}



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[jira] [Commented] (RYA-306) remove generated source from git

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-306?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16117054#comment-16117054
 ] 

ASF GitHub Bot commented on RYA-306:


Github user asfgit commented on the issue:

https://github.com/apache/incubator-rya/pull/191
  

Refer to this link for build results (access rights to CI server needed): 

https://builds.apache.org/job/incubator-rya-master-with-optionals-pull-requests/362/



> remove generated source from git
> 
>
> Key: RYA-306
> URL: https://issues.apache.org/jira/browse/RYA-306
> Project: Rya
>  Issue Type: Bug
>  Components: build
>Reporter: Jeff Dasch
>Assignee: Eric White
>Priority: Trivial
>
> Several files in {{extras/rya.benchmark/src/main/gen}} get modified at 
> compile time.  They should be removed from git and configured to be created 
> in {{extras/rya.benchmark/target/generated-sources}} so they can be removed 
> by {{mvn clean}}.
> Files in question:
> {noformat}
>   modified:   extras/rya.benchmark/src/main/gen/META-INF/sun-jaxb.episode
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/ObjectFactory.java
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/Parameters.java
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/QueriesBenchmarkConf.java
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/Rya.java
> {noformat}



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[GitHub] incubator-rya issue #191: RYA-306 Remove rya.benchmark committed gen

[asfgit]

Github user asfgit commented on the issue:

https://github.com/apache/incubator-rya/pull/191
  

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[jira] [Commented] (RYA-306) remove generated source from git

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-306?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16117053#comment-16117053
 ] 

ASF GitHub Bot commented on RYA-306:


Github user asfgit commented on the issue:

https://github.com/apache/incubator-rya/pull/191
  

Refer to this link for build results (access rights to CI server needed): 

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> remove generated source from git
> 
>
> Key: RYA-306
> URL: https://issues.apache.org/jira/browse/RYA-306
> Project: Rya
>  Issue Type: Bug
>  Components: build
>Reporter: Jeff Dasch
>Assignee: Eric White
>Priority: Trivial
>
> Several files in {{extras/rya.benchmark/src/main/gen}} get modified at 
> compile time.  They should be removed from git and configured to be created 
> in {{extras/rya.benchmark/target/generated-sources}} so they can be removed 
> by {{mvn clean}}.
> Files in question:
> {noformat}
>   modified:   extras/rya.benchmark/src/main/gen/META-INF/sun-jaxb.episode
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/ObjectFactory.java
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/Parameters.java
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/QueriesBenchmarkConf.java
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/Rya.java
> {noformat}



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[jira] [Commented] (RYA-306) remove generated source from git

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-306?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16117020#comment-16117020
 ] 

ASF GitHub Bot commented on RYA-306:


Github user asfgit commented on the issue:

https://github.com/apache/incubator-rya/pull/191
  

Refer to this link for build results (access rights to CI server needed): 

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> remove generated source from git
> 
>
> Key: RYA-306
> URL: https://issues.apache.org/jira/browse/RYA-306
> Project: Rya
>  Issue Type: Bug
>  Components: build
>Reporter: Jeff Dasch
>Assignee: Eric White
>Priority: Trivial
>
> Several files in {{extras/rya.benchmark/src/main/gen}} get modified at 
> compile time.  They should be removed from git and configured to be created 
> in {{extras/rya.benchmark/target/generated-sources}} so they can be removed 
> by {{mvn clean}}.
> Files in question:
> {noformat}
>   modified:   extras/rya.benchmark/src/main/gen/META-INF/sun-jaxb.episode
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/ObjectFactory.java
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/Parameters.java
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/QueriesBenchmarkConf.java
>   modified:   
> extras/rya.benchmark/src/main/gen/org/apache/rya/benchmark/query/Rya.java
> {noformat}



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[GitHub] incubator-rya issue #191: RYA-306 Remove rya.benchmark committed gen

[asfgit]

Github user asfgit commented on the issue:

https://github.com/apache/incubator-rya/pull/191
  

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[jira] [Assigned] (RYA-296) Implement owl:hasSelf inference

[Andrew Smith (JIRA)]

 [ 
https://issues.apache.org/jira/browse/RYA-296?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Andrew Smith reassigned RYA-296:


Assignee: Andrew Smith

> Implement owl:hasSelf inference
> ---
>
> Key: RYA-296
> URL: https://issues.apache.org/jira/browse/RYA-296
> Project: Rya
>  Issue Type: Sub-task
>  Components: sail
>Reporter: Jesse Hatfield
>Assignee: Andrew Smith
>
> An *{{owl:hasSelf}}* restriction defines the set of resources that are 
> connected to themselves by a specific property.
> If the ontology states that a {{:Narcissist}} is a resource that {{:loves}} 
> itself, then the inference engine should:
> 1. Rewrite queries of the form {{?x rdf:type :Narcissist}} to find all 
> resources matching {{?x :loves ?x}} (as well as anything explicitly stated to 
> be a :Narcissist) .
> 2. Rewrite queries of either form {{:A :loves ?y}} or {{?z :loves :A}} to 
> match {{:A}} if {{:A}} is known to have the type {{:Narcissist}} .



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[jira] [Resolved] (RYA-313) Rya Mongo Blows up on Large result sets

[Andrew Smith (JIRA)]

 [ 
https://issues.apache.org/jira/browse/RYA-313?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Andrew Smith resolved RYA-313.
--
Resolution: Fixed

> Rya Mongo Blows up on Large result sets
> ---
>
> Key: RYA-313
> URL: https://issues.apache.org/jira/browse/RYA-313
> Project: Rya
>  Issue Type: Bug
>  Components: dao
>Affects Versions: 3.2.10
> Environment: Mongo DB with Rya 3.2.11-SNAPSHOT with a lot of data in 
> Rya
>Reporter: Aaron Mihalik
>Assignee: Andrew Smith
>
> Simple queries that return a lot of results fail because mongo is trying to 
> send all of the results back at once.  For instance, if I have a lot of data 
> and run something like:
> {noformat}
> SELECT * WHERE 
> {
>   ?s a ?t.
> }
> {noformat}
> I will get this exception.
> {noformat}
> Caused by: com.mongodb.MongoCommandException: Command failed with error 
> 16389: 'aggregation result exceeds maximum document size (16MB)' on server 
> localhost:27017. The full response is { "ok" : 0.0, "errmsg" : "aggregation 
> result exceeds maximum document size (16MB)", "code" : 16389 }
> {noformat}
> I think we need to toss in a "AggregationOptions with Batch = 1000", but I 
> couldn't get that to work immediately.  Somebody with more mongo experience 
> needs to look at this.
> [Here is the line of 
> code|https://github.com/apache/incubator-rya/blob/master/dao/mongodb.rya/src/main/java/org/apache/rya/mongodb/iter/RyaStatementBindingSetCursorIterator.java#L114]



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[jira] [Commented] (RYA-316) Long LineStrings break MongoDB ingest

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-316?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16116904#comment-16116904
 ] 

ASF GitHub Bot commented on RYA-316:


GitHub user isper3at opened a pull request:

https://github.com/apache/incubator-rya/pull/199

RYA-316 Long OBJ string

## Description
>What Changed?

Hash the indexed object field with SHA256.
This will allow the indexer not to break
if the object is longer than 1024 bytes.

### Tests
>Coverage?

Updated the tests with the new fields

### Links
[Jira](https://issues.apache.org/jira/browse/RYA-316)

### Checklist
- [ ] Code Review
- [ ] Squash Commits

 People To Reivew
@meiercaleb 
@amihalik 
@pujav65 


You can merge this pull request into a Git repository by running:

$ git pull https://github.com/isper3at/incubator-rya RYA-316

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/incubator-rya/pull/199.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #199


commit 94f6c9bad01d0cf7c2716895678692065796fa13
Author: isper3at 
Date:   2017-08-07T17:28:46Z

RYA-316 Long OBJ string

Hash the indexed object field with SHA256.
This will allow the indexer not to break
if the object is longer than 1024 bytes.




> Long LineStrings break MongoDB ingest
> -
>
> Key: RYA-316
> URL: https://issues.apache.org/jira/browse/RYA-316
> Project: Rya
>  Issue Type: Bug
>  Components: dao
>Reporter: Aaron Mihalik
>Assignee: Andrew Smith
>
> MongoDB will reject statements they contain very long linestrings.  
> Basically, the mongodb index key is limited to 1024 chars, so the insert will 
> fail if the literal is longer.
> [Here is some example 
> code|https://github.com/amihalik/rya-mongo-debugging/blob/master/src/main/java/com/github/amihalik/rya/mongo/debugging/linestring/LoadLineString.java].
>   I think the inserts will work if you use 10 points, but fail if you use 
> linestrings with 100 points.



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[GitHub] incubator-rya pull request #199: RYA-316 Long OBJ string

[isper3at]

GitHub user isper3at opened a pull request:

https://github.com/apache/incubator-rya/pull/199

RYA-316 Long OBJ string

## Description
>What Changed?

Hash the indexed object field with SHA256.
This will allow the indexer not to break
if the object is longer than 1024 bytes.

### Tests
>Coverage?

Updated the tests with the new fields

### Links
[Jira](https://issues.apache.org/jira/browse/RYA-316)

### Checklist
- [ ] Code Review
- [ ] Squash Commits

 People To Reivew
@meiercaleb 
@amihalik 
@pujav65 


You can merge this pull request into a Git repository by running:

$ git pull https://github.com/isper3at/incubator-rya RYA-316

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/incubator-rya/pull/199.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #199


commit 94f6c9bad01d0cf7c2716895678692065796fa13
Author: isper3at 
Date:   2017-08-07T17:28:46Z

RYA-316 Long OBJ string

Hash the indexed object field with SHA256.
This will allow the indexer not to break
if the object is longer than 1024 bytes.




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