Re: [Numpy-discussion] numpy distutils log error with easy_install
Hi,
On Thu, Oct 4, 2012 at 10:29 AM, Matthew Brett wrote:
> Hi,
>
> On Thu, Oct 4, 2012 at 7:35 AM, Ralf Gommers wrote:
>>
>>
>> On Thu, Oct 4, 2012 at 12:14 AM, Matthew Brett
>> wrote:
>>>
>>> Hi,
>>>
>>> On Wed, Oct 3, 2012 at 10:51 PM, Ralf Gommers
>>> wrote:
>>> >
>>> >
>>> > On Wed, Oct 3, 2012 at 11:29 PM, Matthew Brett
>>> > wrote:
>>> >>
>>> >> Hi,
>>> >>
>>> >> On Wed, Oct 3, 2012 at 10:17 PM, Ralf Gommers
>>> >> wrote:
>>> >> >
>>> >> >
>>> >> > On Mon, Oct 1, 2012 at 10:47 PM, Matthew Brett
>>> >> >
>>> >> > wrote:
>>> >> >>
>>> >> >> Hi,
>>> >> >>
>>> >> >> On Mon, Oct 1, 2012 at 9:42 PM, Matthew Brett
>>> >> >>
>>> >> >> wrote:
>>> >> >> > Hi,
>>> >> >> >
>>> >> >> > One of our kind users pointed out an error when using easy_install
>>> >> >> > to
>>> >> >> > install our package nipy. I've reproduced it now on a bare
>>> >> >> > package
>>> >> >> > using numpy distutils and having a trivial extension:
>>> >> >> >
>>> >> >> > https://github.com/matthew-brett/apkg
>>> >> >> >
>>> >> >> > To reproduce:
>>> >> >> >
>>> >> >> > git clone git://github.com/mathew-brett/apkg.git
>>> >> >> >
>>> >> >> > easy_install apkg
>>> >> >> >
>>> >> >> > You should get something like this:
>>> >> >> >
>>> >> >> > Processing apkg
>>> >> >> > Running setup.py -q bdist_egg --dist-dir
>>> >> >> > /home/mb312/tmp/apkg/egg-dist-tmp-T5yjuB
>>> >> >> > Appending apkg configuration to
>>> >> >> > Ignoring attempt to set 'name' (from '' to 'apkg')
>>> >> >> > zip_safe flag not set; analyzing archive contents...
>>> >> >> > Adding apkg 0.1 to easy-install.pth file
>>> >> >> >
>>> >> >> > Installed
>>> >> >> >
>>> >> >> >
>>> >> >> > /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/apkg-0.1-py2.6-linux-i686.egg
>>> >> >> > Processing dependencies for apkg==0.1
>>> >> >> > Finished processing dependencies for apkg==0.1
>>> >> >> >
>>> >> >> >
>>> >> >> >
>>> >> >> > /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/numpy/distutils/misc_util.py:252:
>>> >> >> > RuntimeWarning: Parent module 'numpy.distutils' not found while
>>> >> >> > handling absolute import
>>> >> >> > from numpy.distutils import log
>>> >> >> >
>>> >> >> > Note the last error.
>>> >> >>
>>> >> >> Sorry, correcting myself - it's (obviously) a Warning rather than an
>>> >> >> error, but still distracting, and it would be good to avoid it if
>>> >> >> possible...
>>> >> >
>>> >> >
>>> >> > The combination of two or all of atexit.register, easy_install and
>>> >> > virtualenv seems to be causing this. Unless someone feels like
>>> >> > digging
>>> >> > into
>>> >> > that (I certainly don't), there are two easy solutions:
>>> >> > 1. Silence the warning.
>>> >>
>>> >> Sorry - I am not sure what you mean. The problem here is the user who
>>> >> assumes that something bad happened when running easy_install - which
>>> >> is what happened in the case of nipy. Is there some way of silencing
>>> >> this (specific) warning from within setup.py?
>>> >>
>>> >> > 2. Remove the offending import and the logging. This will only remove
>>> >> > the
>>> >> > line "removing: _configtest.c _configtest.o" from the build log
>>> >> > (x20).
>>> >>
>>> >> Which import did you mean? I think I need all the imports I'm using
>>> >> in the example minimal package. I'm not explicitly importing logging
>>> >> for example.
>>> >
>>> >
>>> > The import that's indicated in the warning, on line 252 of
>>> > numpy/distutils/misc_util.py. Relevant code:
>>> >
>>> > _temporary_directory = None
>>> > def clean_up_temporary_directory():
>>> > from numpy.distutils import log# CAUSES RUNTIME WARNING
>>> > global _temporary_directory
>>> > if not _temporary_directory:
>>> > return
>>> > log.debug('removing %s', _temporary_directory)
>>> > try:
>>> > shutil.rmtree(_temporary_directory)
>>> > except OSError:
>>> > pass
>>> > _temporary_directory = None
>>> >
>>> > def make_temp_file(suffix='', prefix='', text=True):
>>> > global _temporary_directory
>>> > if not _temporary_directory:
>>> > _temporary_directory = tempfile.mkdtemp()
>>> > atexit.register(clean_up_temporary_directory)
>>>
>>> Sorry - I still don't understand. You mean I should (in my package -
>>> say nipy or 'apkg') monkey-patch numpy distutils.misc_util ?
>>
>>
>> No, I was proposing to fix this in numpy.distutils.misc_util directly. Sorry
>> for not being clear.
>>
>>>
>>>
>>> Another option would be to move the import outside the callback function
>>> thus:
>>
>>
>> Should work too I guess, but since I don't understand why the import is
>> where it is now I'm not 100% sure. Removing the import on line 252 and the
>> log.debug call would be the safest fix.
>
> The import is in the function because the following outside the
> function (at the top of misc_util):
>
> from numpy.distutils import log
>
> leads to the following on `python setup.py install`:
>
> Running from numpy source directory.
> Traceback (most r
Re: [Numpy-discussion] numpy distutils log error with easy_install
Hi,
On Thu, Oct 4, 2012 at 7:35 AM, Ralf Gommers wrote:
>
>
> On Thu, Oct 4, 2012 at 12:14 AM, Matthew Brett
> wrote:
>>
>> Hi,
>>
>> On Wed, Oct 3, 2012 at 10:51 PM, Ralf Gommers
>> wrote:
>> >
>> >
>> > On Wed, Oct 3, 2012 at 11:29 PM, Matthew Brett
>> > wrote:
>> >>
>> >> Hi,
>> >>
>> >> On Wed, Oct 3, 2012 at 10:17 PM, Ralf Gommers
>> >> wrote:
>> >> >
>> >> >
>> >> > On Mon, Oct 1, 2012 at 10:47 PM, Matthew Brett
>> >> >
>> >> > wrote:
>> >> >>
>> >> >> Hi,
>> >> >>
>> >> >> On Mon, Oct 1, 2012 at 9:42 PM, Matthew Brett
>> >> >>
>> >> >> wrote:
>> >> >> > Hi,
>> >> >> >
>> >> >> > One of our kind users pointed out an error when using easy_install
>> >> >> > to
>> >> >> > install our package nipy. I've reproduced it now on a bare
>> >> >> > package
>> >> >> > using numpy distutils and having a trivial extension:
>> >> >> >
>> >> >> > https://github.com/matthew-brett/apkg
>> >> >> >
>> >> >> > To reproduce:
>> >> >> >
>> >> >> > git clone git://github.com/mathew-brett/apkg.git
>> >> >> >
>> >> >> > easy_install apkg
>> >> >> >
>> >> >> > You should get something like this:
>> >> >> >
>> >> >> > Processing apkg
>> >> >> > Running setup.py -q bdist_egg --dist-dir
>> >> >> > /home/mb312/tmp/apkg/egg-dist-tmp-T5yjuB
>> >> >> > Appending apkg configuration to
>> >> >> > Ignoring attempt to set 'name' (from '' to 'apkg')
>> >> >> > zip_safe flag not set; analyzing archive contents...
>> >> >> > Adding apkg 0.1 to easy-install.pth file
>> >> >> >
>> >> >> > Installed
>> >> >> >
>> >> >> >
>> >> >> > /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/apkg-0.1-py2.6-linux-i686.egg
>> >> >> > Processing dependencies for apkg==0.1
>> >> >> > Finished processing dependencies for apkg==0.1
>> >> >> >
>> >> >> >
>> >> >> >
>> >> >> > /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/numpy/distutils/misc_util.py:252:
>> >> >> > RuntimeWarning: Parent module 'numpy.distutils' not found while
>> >> >> > handling absolute import
>> >> >> > from numpy.distutils import log
>> >> >> >
>> >> >> > Note the last error.
>> >> >>
>> >> >> Sorry, correcting myself - it's (obviously) a Warning rather than an
>> >> >> error, but still distracting, and it would be good to avoid it if
>> >> >> possible...
>> >> >
>> >> >
>> >> > The combination of two or all of atexit.register, easy_install and
>> >> > virtualenv seems to be causing this. Unless someone feels like
>> >> > digging
>> >> > into
>> >> > that (I certainly don't), there are two easy solutions:
>> >> > 1. Silence the warning.
>> >>
>> >> Sorry - I am not sure what you mean. The problem here is the user who
>> >> assumes that something bad happened when running easy_install - which
>> >> is what happened in the case of nipy. Is there some way of silencing
>> >> this (specific) warning from within setup.py?
>> >>
>> >> > 2. Remove the offending import and the logging. This will only remove
>> >> > the
>> >> > line "removing: _configtest.c _configtest.o" from the build log
>> >> > (x20).
>> >>
>> >> Which import did you mean? I think I need all the imports I'm using
>> >> in the example minimal package. I'm not explicitly importing logging
>> >> for example.
>> >
>> >
>> > The import that's indicated in the warning, on line 252 of
>> > numpy/distutils/misc_util.py. Relevant code:
>> >
>> > _temporary_directory = None
>> > def clean_up_temporary_directory():
>> > from numpy.distutils import log# CAUSES RUNTIME WARNING
>> > global _temporary_directory
>> > if not _temporary_directory:
>> > return
>> > log.debug('removing %s', _temporary_directory)
>> > try:
>> > shutil.rmtree(_temporary_directory)
>> > except OSError:
>> > pass
>> > _temporary_directory = None
>> >
>> > def make_temp_file(suffix='', prefix='', text=True):
>> > global _temporary_directory
>> > if not _temporary_directory:
>> > _temporary_directory = tempfile.mkdtemp()
>> > atexit.register(clean_up_temporary_directory)
>>
>> Sorry - I still don't understand. You mean I should (in my package -
>> say nipy or 'apkg') monkey-patch numpy distutils.misc_util ?
>
>
> No, I was proposing to fix this in numpy.distutils.misc_util directly. Sorry
> for not being clear.
>
>>
>>
>> Another option would be to move the import outside the callback function
>> thus:
>
>
> Should work too I guess, but since I don't understand why the import is
> where it is now I'm not 100% sure. Removing the import on line 252 and the
> log.debug call would be the safest fix.
The import is in the function because the following outside the
function (at the top of misc_util):
from numpy.distutils import log
leads to the following on `python setup.py install`:
Running from numpy source directory.
Traceback (most recent call last):
File "setup.py", line 214, in
setup_package()
File "setup.py", line 191, in setup_package
from numpy.distutils.core import setup
File "/home/mb312/dev_trees/numpy/numpy/distutils/__ini
Re: [Numpy-discussion] numpy distutils log error with easy_install
On Thu, Oct 4, 2012 at 12:14 AM, Matthew Brett wrote:
> Hi,
>
> On Wed, Oct 3, 2012 at 10:51 PM, Ralf Gommers
> wrote:
> >
> >
> > On Wed, Oct 3, 2012 at 11:29 PM, Matthew Brett
> > wrote:
> >>
> >> Hi,
> >>
> >> On Wed, Oct 3, 2012 at 10:17 PM, Ralf Gommers
> >> wrote:
> >> >
> >> >
> >> > On Mon, Oct 1, 2012 at 10:47 PM, Matthew Brett <
> matthew.br...@gmail.com>
> >> > wrote:
> >> >>
> >> >> Hi,
> >> >>
> >> >> On Mon, Oct 1, 2012 at 9:42 PM, Matthew Brett <
> matthew.br...@gmail.com>
> >> >> wrote:
> >> >> > Hi,
> >> >> >
> >> >> > One of our kind users pointed out an error when using easy_install
> to
> >> >> > install our package nipy. I've reproduced it now on a bare
> package
> >> >> > using numpy distutils and having a trivial extension:
> >> >> >
> >> >> > https://github.com/matthew-brett/apkg
> >> >> >
> >> >> > To reproduce:
> >> >> >
> >> >> > git clone git://github.com/mathew-brett/apkg.git
> >> >> >
> >> >> > easy_install apkg
> >> >> >
> >> >> > You should get something like this:
> >> >> >
> >> >> > Processing apkg
> >> >> > Running setup.py -q bdist_egg --dist-dir
> >> >> > /home/mb312/tmp/apkg/egg-dist-tmp-T5yjuB
> >> >> > Appending apkg configuration to
> >> >> > Ignoring attempt to set 'name' (from '' to 'apkg')
> >> >> > zip_safe flag not set; analyzing archive contents...
> >> >> > Adding apkg 0.1 to easy-install.pth file
> >> >> >
> >> >> > Installed
> >> >> >
> >> >> >
> /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/apkg-0.1-py2.6-linux-i686.egg
> >> >> > Processing dependencies for apkg==0.1
> >> >> > Finished processing dependencies for apkg==0.1
> >> >> >
> >> >> >
> >> >> >
> /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/numpy/distutils/misc_util.py:252:
> >> >> > RuntimeWarning: Parent module 'numpy.distutils' not found while
> >> >> > handling absolute import
> >> >> > from numpy.distutils import log
> >> >> >
> >> >> > Note the last error.
> >> >>
> >> >> Sorry, correcting myself - it's (obviously) a Warning rather than an
> >> >> error, but still distracting, and it would be good to avoid it if
> >> >> possible...
> >> >
> >> >
> >> > The combination of two or all of atexit.register, easy_install and
> >> > virtualenv seems to be causing this. Unless someone feels like digging
> >> > into
> >> > that (I certainly don't), there are two easy solutions:
> >> > 1. Silence the warning.
> >>
> >> Sorry - I am not sure what you mean. The problem here is the user who
> >> assumes that something bad happened when running easy_install - which
> >> is what happened in the case of nipy. Is there some way of silencing
> >> this (specific) warning from within setup.py?
> >>
> >> > 2. Remove the offending import and the logging. This will only remove
> >> > the
> >> > line "removing: _configtest.c _configtest.o" from the build log (x20).
> >>
> >> Which import did you mean? I think I need all the imports I'm using
> >> in the example minimal package. I'm not explicitly importing logging
> >> for example.
> >
> >
> > The import that's indicated in the warning, on line 252 of
> > numpy/distutils/misc_util.py. Relevant code:
> >
> > _temporary_directory = None
> > def clean_up_temporary_directory():
> > from numpy.distutils import log# CAUSES RUNTIME WARNING
> > global _temporary_directory
> > if not _temporary_directory:
> > return
> > log.debug('removing %s', _temporary_directory)
> > try:
> > shutil.rmtree(_temporary_directory)
> > except OSError:
> > pass
> > _temporary_directory = None
> >
> > def make_temp_file(suffix='', prefix='', text=True):
> > global _temporary_directory
> > if not _temporary_directory:
> > _temporary_directory = tempfile.mkdtemp()
> > atexit.register(clean_up_temporary_directory)
>
> Sorry - I still don't understand. You mean I should (in my package -
> say nipy or 'apkg') monkey-patch numpy distutils.misc_util ?
>
No, I was proposing to fix this in numpy.distutils.misc_util directly.
Sorry for not being clear.
>
> Another option would be to move the import outside the callback function
> thus:
>
Should work too I guess, but since I don't understand why the import is
where it is now I'm not 100% sure. Removing the import on line 252 and the
log.debug call would be the safest fix.
Ralf
> diff --git a/numpy/distutils/misc_util.py b/numpy/distutils/misc_util.py
> index 2e4ed27..e00d924 100644
> --- a/numpy/distutils/misc_util.py
> +++ b/numpy/distutils/misc_util.py
> @@ -18,6 +18,7 @@ except NameError:
> from sets import Set as set
>
> from numpy.distutils.compat import get_exception
> +from numpy.distutils.log import debug as log_debug
>
> __all__ = ['Configuration', 'get_numpy_include_dirs',
> 'default_config_dict',
> 'dict_append', 'appendpath', 'generate_config_py',
> @@ -249,11 +250,10 @@ def gpaths(paths, local_path='',
> include_non_existing=True):
>
> _temporary_directory = None
> def clean_up_temporary_dire
Re: [Numpy-discussion] numpy distutils log error with easy_install
Hi,
On Wed, Oct 3, 2012 at 10:51 PM, Ralf Gommers wrote:
>
>
> On Wed, Oct 3, 2012 at 11:29 PM, Matthew Brett
> wrote:
>>
>> Hi,
>>
>> On Wed, Oct 3, 2012 at 10:17 PM, Ralf Gommers
>> wrote:
>> >
>> >
>> > On Mon, Oct 1, 2012 at 10:47 PM, Matthew Brett
>> > wrote:
>> >>
>> >> Hi,
>> >>
>> >> On Mon, Oct 1, 2012 at 9:42 PM, Matthew Brett
>> >> wrote:
>> >> > Hi,
>> >> >
>> >> > One of our kind users pointed out an error when using easy_install to
>> >> > install our package nipy. I've reproduced it now on a bare package
>> >> > using numpy distutils and having a trivial extension:
>> >> >
>> >> > https://github.com/matthew-brett/apkg
>> >> >
>> >> > To reproduce:
>> >> >
>> >> > git clone git://github.com/mathew-brett/apkg.git
>> >> >
>> >> > easy_install apkg
>> >> >
>> >> > You should get something like this:
>> >> >
>> >> > Processing apkg
>> >> > Running setup.py -q bdist_egg --dist-dir
>> >> > /home/mb312/tmp/apkg/egg-dist-tmp-T5yjuB
>> >> > Appending apkg configuration to
>> >> > Ignoring attempt to set 'name' (from '' to 'apkg')
>> >> > zip_safe flag not set; analyzing archive contents...
>> >> > Adding apkg 0.1 to easy-install.pth file
>> >> >
>> >> > Installed
>> >> >
>> >> > /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/apkg-0.1-py2.6-linux-i686.egg
>> >> > Processing dependencies for apkg==0.1
>> >> > Finished processing dependencies for apkg==0.1
>> >> >
>> >> >
>> >> > /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/numpy/distutils/misc_util.py:252:
>> >> > RuntimeWarning: Parent module 'numpy.distutils' not found while
>> >> > handling absolute import
>> >> > from numpy.distutils import log
>> >> >
>> >> > Note the last error.
>> >>
>> >> Sorry, correcting myself - it's (obviously) a Warning rather than an
>> >> error, but still distracting, and it would be good to avoid it if
>> >> possible...
>> >
>> >
>> > The combination of two or all of atexit.register, easy_install and
>> > virtualenv seems to be causing this. Unless someone feels like digging
>> > into
>> > that (I certainly don't), there are two easy solutions:
>> > 1. Silence the warning.
>>
>> Sorry - I am not sure what you mean. The problem here is the user who
>> assumes that something bad happened when running easy_install - which
>> is what happened in the case of nipy. Is there some way of silencing
>> this (specific) warning from within setup.py?
>>
>> > 2. Remove the offending import and the logging. This will only remove
>> > the
>> > line "removing: _configtest.c _configtest.o" from the build log (x20).
>>
>> Which import did you mean? I think I need all the imports I'm using
>> in the example minimal package. I'm not explicitly importing logging
>> for example.
>
>
> The import that's indicated in the warning, on line 252 of
> numpy/distutils/misc_util.py. Relevant code:
>
> _temporary_directory = None
> def clean_up_temporary_directory():
> from numpy.distutils import log# CAUSES RUNTIME WARNING
> global _temporary_directory
> if not _temporary_directory:
> return
> log.debug('removing %s', _temporary_directory)
> try:
> shutil.rmtree(_temporary_directory)
> except OSError:
> pass
> _temporary_directory = None
>
> def make_temp_file(suffix='', prefix='', text=True):
> global _temporary_directory
> if not _temporary_directory:
> _temporary_directory = tempfile.mkdtemp()
> atexit.register(clean_up_temporary_directory)
Sorry - I still don't understand. You mean I should (in my package -
say nipy or 'apkg') monkey-patch numpy distutils.misc_util ?
Another option would be to move the import outside the callback function thus:
diff --git a/numpy/distutils/misc_util.py b/numpy/distutils/misc_util.py
index 2e4ed27..e00d924 100644
--- a/numpy/distutils/misc_util.py
+++ b/numpy/distutils/misc_util.py
@@ -18,6 +18,7 @@ except NameError:
from sets import Set as set
from numpy.distutils.compat import get_exception
+from numpy.distutils.log import debug as log_debug
__all__ = ['Configuration', 'get_numpy_include_dirs', 'default_config_dict',
'dict_append', 'appendpath', 'generate_config_py',
@@ -249,11 +250,10 @@ def gpaths(paths, local_path='',
include_non_existing=True):
_temporary_directory = None
def clean_up_temporary_directory():
-from numpy.distutils import log
global _temporary_directory
if not _temporary_directory:
return
-log.debug('removing %s', _temporary_directory)
+log_debug('removing %s', _temporary_directory)
try:
shutil.rmtree(_temporary_directory)
except OSError:
Do you happen to know if that will break anything? Setup install runs for me...
Cheers,
Matthew
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Re: [Numpy-discussion] numpy distutils log error with easy_install
On Wed, Oct 3, 2012 at 11:29 PM, Matthew Brett wrote:
> Hi,
>
> On Wed, Oct 3, 2012 at 10:17 PM, Ralf Gommers
> wrote:
> >
> >
> > On Mon, Oct 1, 2012 at 10:47 PM, Matthew Brett
> > wrote:
> >>
> >> Hi,
> >>
> >> On Mon, Oct 1, 2012 at 9:42 PM, Matthew Brett
> >> wrote:
> >> > Hi,
> >> >
> >> > One of our kind users pointed out an error when using easy_install to
> >> > install our package nipy. I've reproduced it now on a bare package
> >> > using numpy distutils and having a trivial extension:
> >> >
> >> > https://github.com/matthew-brett/apkg
> >> >
> >> > To reproduce:
> >> >
> >> > git clone git://github.com/mathew-brett/apkg.git
> >> >
> >> > easy_install apkg
> >> >
> >> > You should get something like this:
> >> >
> >> > Processing apkg
> >> > Running setup.py -q bdist_egg --dist-dir
> >> > /home/mb312/tmp/apkg/egg-dist-tmp-T5yjuB
> >> > Appending apkg configuration to
> >> > Ignoring attempt to set 'name' (from '' to 'apkg')
> >> > zip_safe flag not set; analyzing archive contents...
> >> > Adding apkg 0.1 to easy-install.pth file
> >> >
> >> > Installed
> >> >
> /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/apkg-0.1-py2.6-linux-i686.egg
> >> > Processing dependencies for apkg==0.1
> >> > Finished processing dependencies for apkg==0.1
> >> >
> >> >
> /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/numpy/distutils/misc_util.py:252:
> >> > RuntimeWarning: Parent module 'numpy.distutils' not found while
> >> > handling absolute import
> >> > from numpy.distutils import log
> >> >
> >> > Note the last error.
> >>
> >> Sorry, correcting myself - it's (obviously) a Warning rather than an
> >> error, but still distracting, and it would be good to avoid it if
> >> possible...
> >
> >
> > The combination of two or all of atexit.register, easy_install and
> > virtualenv seems to be causing this. Unless someone feels like digging
> into
> > that (I certainly don't), there are two easy solutions:
> > 1. Silence the warning.
>
> Sorry - I am not sure what you mean. The problem here is the user who
> assumes that something bad happened when running easy_install - which
> is what happened in the case of nipy. Is there some way of silencing
> this (specific) warning from within setup.py?
>
> > 2. Remove the offending import and the logging. This will only remove the
> > line "removing: _configtest.c _configtest.o" from the build log (x20).
>
> Which import did you mean? I think I need all the imports I'm using
> in the example minimal package. I'm not explicitly importing logging
> for example.
>
The import that's indicated in the warning, on line 252 of
numpy/distutils/misc_util.py. Relevant code:
_temporary_directory = None
def clean_up_temporary_directory():
from numpy.distutils import log# CAUSES RUNTIME WARNING
global _temporary_directory
if not _temporary_directory:
return
log.debug('removing %s', _temporary_directory)
try:
shutil.rmtree(_temporary_directory)
except OSError:
pass
_temporary_directory = None
def make_temp_file(suffix='', prefix='', text=True):
global _temporary_directory
if not _temporary_directory:
_temporary_directory = tempfile.mkdtemp()
atexit.register(clean_up_temporary_directory)
Ralf
> Thanks for looking into it...
>
> Cheers,
>
> Matthew
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Re: [Numpy-discussion] numpy distutils log error with easy_install
Hi, On Wed, Oct 3, 2012 at 10:17 PM, Ralf Gommers wrote: > > > On Mon, Oct 1, 2012 at 10:47 PM, Matthew Brett > wrote: >> >> Hi, >> >> On Mon, Oct 1, 2012 at 9:42 PM, Matthew Brett >> wrote: >> > Hi, >> > >> > One of our kind users pointed out an error when using easy_install to >> > install our package nipy. I've reproduced it now on a bare package >> > using numpy distutils and having a trivial extension: >> > >> > https://github.com/matthew-brett/apkg >> > >> > To reproduce: >> > >> > git clone git://github.com/mathew-brett/apkg.git >> > >> > easy_install apkg >> > >> > You should get something like this: >> > >> > Processing apkg >> > Running setup.py -q bdist_egg --dist-dir >> > /home/mb312/tmp/apkg/egg-dist-tmp-T5yjuB >> > Appending apkg configuration to >> > Ignoring attempt to set 'name' (from '' to 'apkg') >> > zip_safe flag not set; analyzing archive contents... >> > Adding apkg 0.1 to easy-install.pth file >> > >> > Installed >> > /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/apkg-0.1-py2.6-linux-i686.egg >> > Processing dependencies for apkg==0.1 >> > Finished processing dependencies for apkg==0.1 >> > >> > /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/numpy/distutils/misc_util.py:252: >> > RuntimeWarning: Parent module 'numpy.distutils' not found while >> > handling absolute import >> > from numpy.distutils import log >> > >> > Note the last error. >> >> Sorry, correcting myself - it's (obviously) a Warning rather than an >> error, but still distracting, and it would be good to avoid it if >> possible... > > > The combination of two or all of atexit.register, easy_install and > virtualenv seems to be causing this. Unless someone feels like digging into > that (I certainly don't), there are two easy solutions: > 1. Silence the warning. Sorry - I am not sure what you mean. The problem here is the user who assumes that something bad happened when running easy_install - which is what happened in the case of nipy. Is there some way of silencing this (specific) warning from within setup.py? > 2. Remove the offending import and the logging. This will only remove the > line "removing: _configtest.c _configtest.o" from the build log (x20). Which import did you mean? I think I need all the imports I'm using in the example minimal package. I'm not explicitly importing logging for example. Thanks for looking into it... Cheers, Matthew ___ NumPy-Discussion mailing list NumPy-Discussion@scipy.org http://mail.scipy.org/mailman/listinfo/numpy-discussion
Re: [Numpy-discussion] numpy distutils log error with easy_install
On Mon, Oct 1, 2012 at 10:47 PM, Matthew Brett wrote: > Hi, > > On Mon, Oct 1, 2012 at 9:42 PM, Matthew Brett > wrote: > > Hi, > > > > One of our kind users pointed out an error when using easy_install to > > install our package nipy. I've reproduced it now on a bare package > > using numpy distutils and having a trivial extension: > > > > https://github.com/matthew-brett/apkg > > > > To reproduce: > > > > git clone git://github.com/mathew-brett/apkg.git > > > > easy_install apkg > > > > You should get something like this: > > > > Processing apkg > > Running setup.py -q bdist_egg --dist-dir > > /home/mb312/tmp/apkg/egg-dist-tmp-T5yjuB > > Appending apkg configuration to > > Ignoring attempt to set 'name' (from '' to 'apkg') > > zip_safe flag not set; analyzing archive contents... > > Adding apkg 0.1 to easy-install.pth file > > > > Installed > /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/apkg-0.1-py2.6-linux-i686.egg > > Processing dependencies for apkg==0.1 > > Finished processing dependencies for apkg==0.1 > > > /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/numpy/distutils/misc_util.py:252: > > RuntimeWarning: Parent module 'numpy.distutils' not found while > > handling absolute import > > from numpy.distutils import log > > > > Note the last error. > > Sorry, correcting myself - it's (obviously) a Warning rather than an > error, but still distracting, and it would be good to avoid it if > possible... > The combination of two or all of atexit.register, easy_install and virtualenv seems to be causing this. Unless someone feels like digging into that (I certainly don't), there are two easy solutions: 1. Silence the warning. 2. Remove the offending import and the logging. This will only remove the line "removing: _configtest.c _configtest.o" from the build log (x20). Ralf ___ NumPy-Discussion mailing list NumPy-Discussion@scipy.org http://mail.scipy.org/mailman/listinfo/numpy-discussion
Re: [Numpy-discussion] numpy distutils log error with easy_install
Hi, On Mon, Oct 1, 2012 at 9:42 PM, Matthew Brett wrote: > Hi, > > One of our kind users pointed out an error when using easy_install to > install our package nipy. I've reproduced it now on a bare package > using numpy distutils and having a trivial extension: > > https://github.com/matthew-brett/apkg > > To reproduce: > > git clone git://github.com/mathew-brett/apkg.git > > easy_install apkg > > You should get something like this: > > Processing apkg > Running setup.py -q bdist_egg --dist-dir > /home/mb312/tmp/apkg/egg-dist-tmp-T5yjuB > Appending apkg configuration to > Ignoring attempt to set 'name' (from '' to 'apkg') > zip_safe flag not set; analyzing archive contents... > Adding apkg 0.1 to easy-install.pth file > > Installed > /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/apkg-0.1-py2.6-linux-i686.egg > Processing dependencies for apkg==0.1 > Finished processing dependencies for apkg==0.1 > /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/numpy/distutils/misc_util.py:252: > RuntimeWarning: Parent module 'numpy.distutils' not found while > handling absolute import > from numpy.distutils import log > > Note the last error. Sorry, correcting myself - it's (obviously) a Warning rather than an error, but still distracting, and it would be good to avoid it if possible... Best, Matthew ___ NumPy-Discussion mailing list NumPy-Discussion@scipy.org http://mail.scipy.org/mailman/listinfo/numpy-discussion
[Numpy-discussion] numpy distutils log error with easy_install
Hi, One of our kind users pointed out an error when using easy_install to install our package nipy. I've reproduced it now on a bare package using numpy distutils and having a trivial extension: https://github.com/matthew-brett/apkg To reproduce: git clone git://github.com/mathew-brett/apkg.git easy_install apkg You should get something like this: Processing apkg Running setup.py -q bdist_egg --dist-dir /home/mb312/tmp/apkg/egg-dist-tmp-T5yjuB Appending apkg configuration to Ignoring attempt to set 'name' (from '' to 'apkg') zip_safe flag not set; analyzing archive contents... Adding apkg 0.1 to easy-install.pth file Installed /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/apkg-0.1-py2.6-linux-i686.egg Processing dependencies for apkg==0.1 Finished processing dependencies for apkg==0.1 /home/mb312/.virtualenvs/np-1.6.2/lib/python2.6/site-packages/numpy/distutils/misc_util.py:252: RuntimeWarning: Parent module 'numpy.distutils' not found while handling absolute import from numpy.distutils import log Note the last error. All of nipy, scikits-learn and scikits-timeseries (that use numpy distutils) give this same error on easy_install. The error requires the use of an extension in the package, as in: https://github.com/matthew-brett/apkg/blob/master/apkg/setup.py#L4 It appears to be benign but it certainly confuses people doing easy_install. This is running current numpy master, but the same occurs with numpy 1.5.1 that I have to hand. Any ideas what could be causing this? Cheers, Matthew ___ NumPy-Discussion mailing list NumPy-Discussion@scipy.org http://mail.scipy.org/mailman/listinfo/numpy-discussion
