Re: [Numpy-discussion] status for 1.6.0

2011-04-23 Thread Ralf Gommers
On Fri, Apr 22, 2011 at 11:54 PM, Mark Wiebe mwwi...@gmail.com wrote:
 On Sun, Apr 17, 2011 at 8:55 AM, Ralf Gommers ralf.gomm...@googlemail.com
 wrote:

 Hi,

 The list of open issues for 1.6.0 is down to a handful:

 - f2py segfault on Ubuntu reported by David (David, did you get any
 further with this?)
 - #1801: test_noncentral_f failure on win64
 - #1798: type promotion regression (needs review,
 https://github.com/numpy/numpy/pull/73)

 I've pushed this change, anyone interested should review the tests for this
 to verify that it accords with their intuition:
 https://github.com/numpy/numpy/blob/maintenance%2F1.6.x/numpy/core/tests/test_numeric.py#L372

 - API docs for new parameters to ufuncs (full list: 'casting', 'out',
 'order', 'subok', 'dtype'),

 Done.

Great, thanks.


 - API docs, some docstrings and update of NEP for datetime

 I'm planning to release the first release candidate next weekend if
 these are solved.  As far as I know no one is working on the doc
 issues right now. It would be great if someone could step up and do
 this.

 There's a new ticket #1805 which should get fixed for the RC too.

Charles already attached a patch to #1805, it would be great if you
could review that. If the fix is correct we're good to go.

Ralf
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Re: [Numpy-discussion] status for 1.6.0

2011-04-23 Thread Charles R Harris
On Sat, Apr 23, 2011 at 12:45 PM, Ralf Gommers
ralf.gomm...@googlemail.comwrote:

 On Fri, Apr 22, 2011 at 11:54 PM, Mark Wiebe mwwi...@gmail.com wrote:
  On Sun, Apr 17, 2011 at 8:55 AM, Ralf Gommers 
 ralf.gomm...@googlemail.com
  wrote:
 
  Hi,
 
  The list of open issues for 1.6.0 is down to a handful:
 
  - f2py segfault on Ubuntu reported by David (David, did you get any
  further with this?)
  - #1801: test_noncentral_f failure on win64
  - #1798: type promotion regression (needs review,
  https://github.com/numpy/numpy/pull/73)
 
  I've pushed this change, anyone interested should review the tests for
 this
  to verify that it accords with their intuition:
 
 https://github.com/numpy/numpy/blob/maintenance%2F1.6.x/numpy/core/tests/test_numeric.py#L372
 
  - API docs for new parameters to ufuncs (full list: 'casting', 'out',
  'order', 'subok', 'dtype'),
 
  Done.

 Great, thanks.
 
 
  - API docs, some docstrings and update of NEP for datetime
 
  I'm planning to release the first release candidate next weekend if
  these are solved.  As far as I know no one is working on the doc
  issues right now. It would be great if someone could step up and do
  this.
 
  There's a new ticket #1805 which should get fixed for the RC too.

 Charles already attached a patch to #1805, it would be great if you
 could review that. If the fix is correct we're good to go.


Oh, that just makes numpy run. It doesn't run correctly, though, there are
lots of failing tests. The patch is a work in progress and is up for review
and tinkering.

Chuck
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Re: [Numpy-discussion] status for 1.6.0

2011-04-22 Thread Ralf Gommers
On Thu, Apr 21, 2011 at 3:37 AM, Christoph Gohlke cgoh...@uci.edu wrote:


 On 4/20/2011 1:55 PM, Ralf Gommers wrote:
 On Mon, Apr 18, 2011 at 2:36 AM, Christoph Gohlkecgoh...@uci.edu  wrote:


 On 4/17/2011 8:55 AM, Ralf Gommers wrote:

 Hi,

 The list of open issues for 1.6.0 is down to a handful:

 - f2py segfault on Ubuntu reported by David (David, did you get any
 further with this?)
 - #1801: test_noncentral_f failure on win64
 - #1798: type promotion regression (needs review,
 https://github.com/numpy/numpy/pull/73)
 - API docs for new parameters to ufuncs (full list: 'casting', 'out',
 'order', 'subok', 'dtype'),
 - API docs, some docstrings and update of NEP for datetime

 I'm planning to release the first release candidate next weekend if
 these are solved.  As far as I know no one is working on the doc
 issues right now. It would be great if someone could step up and do
 this.

 Thanks,
 Ralf


 Hi Ralf,

 I submitted a patch for issue #1801. All tests now pass on win-amd64-py3.2
 with numpy 1.6.x from git.

 Great, thanks.

 Would it be possible to get the attached patch for scipy ticket #678
 http://projects.scipy.org/scipy/ticket/678  into numpy 1.6? The
 fix/workaround for the scipy ODR failures is to change the ifort
 optimization flag from /O3 to /O1.

 Several other people already ran into this, so it would probably still
 good to change this for 1.6.0. This change is part of a proposed
 patch: http://projects.scipy.org/numpy/ticket/1378. Do any of the
 other changes there look relevant too?

 Ralf

 The changes for the Intel Visual Fortran Compiler looks OK. '/Qip' is
 the default option, and '/Qipo','/Qipo_obj' have already been removed
 some time ago.

 I have not used older Intel Fortran compilers but the '-xHOST' switch
 does not seem apt.

Thanks for checking, should be fixed now.

Cheers,
Ralf
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Re: [Numpy-discussion] status for 1.6.0

2011-04-22 Thread Mark Wiebe
On Sun, Apr 17, 2011 at 8:55 AM, Ralf Gommers
ralf.gomm...@googlemail.comwrote:

 Hi,

 The list of open issues for 1.6.0 is down to a handful:

 - f2py segfault on Ubuntu reported by David (David, did you get any
 further with this?)
 - #1801: test_noncentral_f failure on win64
 - #1798: type promotion regression (needs review,
 https://github.com/numpy/numpy/pull/73)


I've pushed this change, anyone interested should review the tests for this
to verify that it accords with their intuition:

https://github.com/numpy/numpy/blob/maintenance%2F1.6.x/numpy/core/tests/test_numeric.py#L372

- API docs for new parameters to ufuncs (full list: 'casting', 'out',
 'order', 'subok', 'dtype'),


Done.


 - API docs, some docstrings and update of NEP for datetime

 I'm planning to release the first release candidate next weekend if
 these are solved.  As far as I know no one is working on the doc
 issues right now. It would be great if someone could step up and do
 this.


There's a new ticket #1805 which should get fixed for the RC too.

-Mark
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Re: [Numpy-discussion] status for 1.6.0

2011-04-20 Thread Ralf Gommers
On Tue, Apr 19, 2011 at 8:54 AM, David Cournapeau courn...@gmail.com wrote:
 On Mon, Apr 18, 2011 at 1:47 PM, David Cournapeau courn...@gmail.com wrote:
 On Mon, Apr 18, 2011 at 12:55 AM, Ralf Gommers
 ralf.gomm...@googlemail.com wrote:
 Hi,

 The list of open issues for 1.6.0 is down to a handful:

 - f2py segfault on Ubuntu reported by David (David, did you get any
 further with this?)

 I could reproduce on another machine (MAC OS X, different hardware), I
 will take a look at it tonight.

 Ok, so the problem appears only when run through nosetests for a
 in-place build of numpy. I think it is fair to say it is a bug
 somewhere in nosetests or some weird import-related corner cases that
 we don't care about.

 If I run the same failing test for a normal install, I don't get the issue.

Okay, that for checking. That can be ignored then.

Cheers,
Ralf
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Re: [Numpy-discussion] status for 1.6.0

2011-04-20 Thread Ralf Gommers
On Mon, Apr 18, 2011 at 2:36 AM, Christoph Gohlke cgoh...@uci.edu wrote:


 On 4/17/2011 8:55 AM, Ralf Gommers wrote:

 Hi,

 The list of open issues for 1.6.0 is down to a handful:

 - f2py segfault on Ubuntu reported by David (David, did you get any
 further with this?)
 - #1801: test_noncentral_f failure on win64
 - #1798: type promotion regression (needs review,
 https://github.com/numpy/numpy/pull/73)
 - API docs for new parameters to ufuncs (full list: 'casting', 'out',
 'order', 'subok', 'dtype'),
 - API docs, some docstrings and update of NEP for datetime

 I'm planning to release the first release candidate next weekend if
 these are solved.  As far as I know no one is working on the doc
 issues right now. It would be great if someone could step up and do
 this.

 Thanks,
 Ralf


 Hi Ralf,

 I submitted a patch for issue #1801. All tests now pass on win-amd64-py3.2
 with numpy 1.6.x from git.

Great, thanks.

 Would it be possible to get the attached patch for scipy ticket #678
 http://projects.scipy.org/scipy/ticket/678 into numpy 1.6? The
 fix/workaround for the scipy ODR failures is to change the ifort
 optimization flag from /O3 to /O1.

Several other people already ran into this, so it would probably still
good to change this for 1.6.0. This change is part of a proposed
patch: http://projects.scipy.org/numpy/ticket/1378. Do any of the
other changes there look relevant too?

Ralf
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Re: [Numpy-discussion] status for 1.6.0

2011-04-20 Thread Christoph Gohlke


On 4/20/2011 1:55 PM, Ralf Gommers wrote:
 On Mon, Apr 18, 2011 at 2:36 AM, Christoph Gohlkecgoh...@uci.edu  wrote:


 On 4/17/2011 8:55 AM, Ralf Gommers wrote:

 Hi,

 The list of open issues for 1.6.0 is down to a handful:

 - f2py segfault on Ubuntu reported by David (David, did you get any
 further with this?)
 - #1801: test_noncentral_f failure on win64
 - #1798: type promotion regression (needs review,
 https://github.com/numpy/numpy/pull/73)
 - API docs for new parameters to ufuncs (full list: 'casting', 'out',
 'order', 'subok', 'dtype'),
 - API docs, some docstrings and update of NEP for datetime

 I'm planning to release the first release candidate next weekend if
 these are solved.  As far as I know no one is working on the doc
 issues right now. It would be great if someone could step up and do
 this.

 Thanks,
 Ralf


 Hi Ralf,

 I submitted a patch for issue #1801. All tests now pass on win-amd64-py3.2
 with numpy 1.6.x from git.

 Great, thanks.

 Would it be possible to get the attached patch for scipy ticket #678
 http://projects.scipy.org/scipy/ticket/678  into numpy 1.6? The
 fix/workaround for the scipy ODR failures is to change the ifort
 optimization flag from /O3 to /O1.

 Several other people already ran into this, so it would probably still
 good to change this for 1.6.0. This change is part of a proposed
 patch: http://projects.scipy.org/numpy/ticket/1378. Do any of the
 other changes there look relevant too?

 Ralf

The changes for the Intel Visual Fortran Compiler looks OK. '/Qip' is 
the default option, and '/Qipo','/Qipo_obj' have already been removed 
some time ago.

I have not used older Intel Fortran compilers but the '-xHOST' switch 
does not seem apt.

Christoph
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Re: [Numpy-discussion] status for 1.6.0

2011-04-19 Thread David Cournapeau
On Mon, Apr 18, 2011 at 1:47 PM, David Cournapeau courn...@gmail.com wrote:
 On Mon, Apr 18, 2011 at 12:55 AM, Ralf Gommers
 ralf.gomm...@googlemail.com wrote:
 Hi,

 The list of open issues for 1.6.0 is down to a handful:

 - f2py segfault on Ubuntu reported by David (David, did you get any
 further with this?)

 I could reproduce on another machine (MAC OS X, different hardware), I
 will take a look at it tonight.

Ok, so the problem appears only when run through nosetests for a
in-place build of numpy. I think it is fair to say it is a bug
somewhere in nosetests or some weird import-related corner cases that
we don't care about.

If I run the same failing test for a normal install, I don't get the issue.

cheers,

David
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Re: [Numpy-discussion] status for 1.6.0

2011-04-19 Thread Michael Droettboom
I think I just found a reference leak in the reduction ufunc code that 
was exercised by some of the matplotlib regression tests.  You may want 
to look at this before cutting a release:

https://github.com/numpy/numpy/pull/76

Cheers,
Mike

On 04/17/2011 11:55 AM, Ralf Gommers wrote:
 Hi,

 The list of open issues for 1.6.0 is down to a handful:

 - f2py segfault on Ubuntu reported by David (David, did you get any
 further with this?)
 - #1801: test_noncentral_f failure on win64
 - #1798: type promotion regression (needs review,
 https://github.com/numpy/numpy/pull/73)
 - API docs for new parameters to ufuncs (full list: 'casting', 'out',
 'order', 'subok', 'dtype'),
 - API docs, some docstrings and update of NEP for datetime

 I'm planning to release the first release candidate next weekend if
 these are solved.  As far as I know no one is working on the doc
 issues right now. It would be great if someone could step up and do
 this.

 Thanks,
 Ralf
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-- 
Michael Droettboom
Science Software Branch
Space Telescope Science Institute
Baltimore, Maryland, USA

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Re: [Numpy-discussion] status for 1.6.0

2011-04-17 Thread Christoph Gohlke



On 4/17/2011 8:55 AM, Ralf Gommers wrote:

Hi,

The list of open issues for 1.6.0 is down to a handful:

- f2py segfault on Ubuntu reported by David (David, did you get any
further with this?)
- #1801: test_noncentral_f failure on win64
- #1798: type promotion regression (needs review,
https://github.com/numpy/numpy/pull/73)
- API docs for new parameters to ufuncs (full list: 'casting', 'out',
'order', 'subok', 'dtype'),
- API docs, some docstrings and update of NEP for datetime

I'm planning to release the first release candidate next weekend if
these are solved.  As far as I know no one is working on the doc
issues right now. It would be great if someone could step up and do
this.

Thanks,
Ralf



Hi Ralf,

I submitted a patch for issue #1801. All tests now pass on 
win-amd64-py3.2 with numpy 1.6.x from git.


Would it be possible to get the attached patch for scipy ticket #678 
http://projects.scipy.org/scipy/ticket/678 into numpy 1.6? The 
fix/workaround for the scipy ODR failures is to change the ifort 
optimization flag from /O3 to /O1.


Christoph
diff --git a/numpy/distutils/fcompiler/intel.py 
b/numpy/distutils/fcompiler/intel.py
index b593a91..b2ea124 100644
--- a/numpy/distutils/fcompiler/intel.py
+++ b/numpy/distutils/fcompiler/intel.py
@@ -201,7 +201,7 @@ class IntelVisualFCompiler(BaseIntelFCompiler):
 return ['/4Yb','/d2']
 
 def get_flags_opt(self):
-return ['/O3','/Qip']
+return ['/O1','/Qip']
 
 def get_flags_arch(self):
 opt = []
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Re: [Numpy-discussion] status for 1.6.0

2011-04-17 Thread David Cournapeau
On Mon, Apr 18, 2011 at 12:55 AM, Ralf Gommers
ralf.gomm...@googlemail.com wrote:
 Hi,

 The list of open issues for 1.6.0 is down to a handful:

 - f2py segfault on Ubuntu reported by David (David, did you get any
 further with this?)

I could reproduce on another machine (MAC OS X, different hardware), I
will take a look at it tonight.

cheers,

David
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