Re: [Open Babel] create a database with openbabel
Hello, if you are considering pgchem you may want to have a look at an updated version of it by Björn Grüning (http://github.com/bgruening/pgchem_tigress) How to install pgchem is explained in the following blog post as well: http://howwasthatagain.blogspot.de/2013/06/installing-pgchem-with-postgres-9-and.html Yours, Charlotta --- Charlotta Schärfe Eberhard Karls University Tübingen Applied Bioinformatics Group Phone: +49 (0)7071 29-70462 schae...@informatik.uni-tuebingen.de On Aug 22, 2013, at 10:11 PM, Maciek Wójcikowski wrote: Hello, The other choice, if you prefer MySQL, is Mychem http://mychem.sourceforge.net/. But I'd say neither of them is easy to use for unexperienced user (unless you have at least some DB knowledge). Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2013/8/22 Steffen Neumann sneum...@ipb-halle.de Hi, you could check out https://github.com/ergo70/pgchem_tigress Also check out the blog at http://theplateisbad.blogspot.de/ Yours, Steffen On Sat, 2013-06-29 at 15:06 -0700, Juan F Sánchez wrote: Hello, my name is Juan Francisco Sánchez I am a professor of the university of Mèxico I'm interested in knowing how to build a database of chemical structures with openbabel, (file. SDF) but I do not know how to do it I'd like you to help me: Where do I find instructions or tutorial for building a database of chemical structures with openbabel, (file. SDF)? Thanks -- This SF.net email is sponsored by Windows: Build for Windows Store. http://p.sf.net/sfu/windows-dev2dev ___ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss -- IPB HalleAG Massenspektrometrie Bioinformatik Dr. Steffen Neumann http://www.IPB-Halle.DE Weinberg 3 http://msbi.bic-gh.de 06120 Halle Tel. +49 (0) 345 5582 - 1470 +49 (0) 345 5582 - 0 sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409 -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511iu=/4140/ostg.clktrk ___ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511iu=/4140/ostg.clktrk___ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511iu=/4140/ostg.clktrk ___ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
Re: [Open Babel] create a database with openbabel
Hi, you could check out https://github.com/ergo70/pgchem_tigress Also check out the blog at http://theplateisbad.blogspot.de/ Yours, Steffen On Sat, 2013-06-29 at 15:06 -0700, Juan F Sánchez wrote: Hello, my name is Juan Francisco Sánchez I am a professor of the university of Mèxico I'm interested in knowing how to build a database of chemical structures with openbabel, (file. SDF) but I do not know how to do it I'd like you to help me: Where do I find instructions or tutorial for building a database of chemical structures with openbabel, (file. SDF)? Thanks -- This SF.net email is sponsored by Windows: Build for Windows Store. http://p.sf.net/sfu/windows-dev2dev ___ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss -- IPB HalleAG Massenspektrometrie Bioinformatik Dr. Steffen Neumann http://www.IPB-Halle.DE Weinberg 3 http://msbi.bic-gh.de 06120 Halle Tel. +49 (0) 345 5582 - 1470 +49 (0) 345 5582 - 0 sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409 -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511iu=/4140/ostg.clktrk ___ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
Re: [Open Babel] create a database with openbabel
Hello, The other choice, if you prefer MySQL, is Mychem http://mychem.sourceforge.net/. But I'd say neither of them is easy to use for unexperienced user (unless you have at least some DB knowledge). Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2013/8/22 Steffen Neumann sneum...@ipb-halle.de Hi, you could check out https://github.com/ergo70/pgchem_tigress Also check out the blog at http://theplateisbad.blogspot.de/ Yours, Steffen On Sat, 2013-06-29 at 15:06 -0700, Juan F Sánchez wrote: Hello, my name is Juan Francisco Sánchez I am a professor of the university of Mèxico I'm interested in knowing how to build a database of chemical structures with openbabel, (file. SDF) but I do not know how to do it I'd like you to help me: Where do I find instructions or tutorial for building a database of chemical structures with openbabel, (file. SDF)? Thanks -- This SF.net email is sponsored by Windows: Build for Windows Store. http://p.sf.net/sfu/windows-dev2dev ___ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss -- IPB HalleAG Massenspektrometrie Bioinformatik Dr. Steffen Neumann http://www.IPB-Halle.DE Weinberg 3 http://msbi.bic-gh.de 06120 Halle Tel. +49 (0) 345 5582 - 1470 +49 (0) 345 5582 - 0 sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409 -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511iu=/4140/ostg.clktrk ___ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511iu=/4140/ostg.clktrk___ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
