Units, Quantities, etc

2012-03-19 Thread michael.law...@csiro.au

Graham,

I'm trying to make sense of this discussion around computability -- what
are the kinds of things that one wants to compute with these kinds of
countable things?

michael

On 18/03/12 10:57 PM, Grahame Grieve
grahame at healthintersections.com.au wrote:

Are discrete units only encountered in administrative directives? Do
you prohibit people from making observations or measurements that
include discrete units such as puffs, tablets, patches, vials, strips etc?

why?

HL7 does because we claim that you have to have UCUM codes
so the data can be computable. If people simply want to exchange
it in a structured but non-computable fashion... they can go to hell.
And as for computable: we insist on a ucum code, and then say
that for these discrete unit kind of things, well, you just put 1 for
countable units, and then put the effective unit somewhere else -
somewhere that no one can actually pull off in practice - because
this is more computable. Huh? We do not make sense on this.

So much for HL7... what's openEHR's excuse?

Grahame


On Sun, Mar 18, 2012 at 11:18 PM, Thomas Beale
thomas.beale at oceaninformatics.com wrote:

 As Grahame mentioned on an earlier post, the question of units is
thorny.
 Although we technical people would like to mandate UCUM or some other
 well-designed computable syntax, on its own, it won't work. There seem
to be
 two reasons for this:

 it doesn't take care of the need for a displayable form of units, e.g.
the
 computable form 'mcg' or 'ug', where as the displayable is '?g' (Greek
mu
 followed by 'g')
 it doesn't take care of 'units' like puffs, tablets, patches, vials,
strips,
 and other discrete delivery units
 it doesn't take care of discrete delivery units per time, e.g. '2 puffs
/
 hour'

 Grahame and others have already done a lot of thinking on this here -
there
 are a lot of excellent examples from Linda Bird on the Singapore
programme.

 The more I think about the last two above, the more I think it is not
about
 quantities per se but about an administration directive (how the patient
 should take something). Trying to make Quantity do that kind of stuff
 doesn't make sense to me - there is obviously a Quantity to indicate the
 dose in scientific form, but another data element may be needed to
indicate
 how (in what discrete measures) to take the medication.

 I would therefore expect a distinct data element in the Medication
Cluster
 archetype rather than a re-engineered Quantity type to deal with these
last
 two. For the first one - displayable v computable, we will need a CR to
 change DV_QUANTITY, and make it work like the FHIR Quantity - i.e. have
a
 second units field.

 Some of my earlier thoughts are actually on the above wiki page - the
 concept of a DiscretisedQuantity type inheriting from Quantity, which I
 think is also a reasonable alternative.

 what do others think?

 - thomas

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-
http://www.healthintersections.com.au /
grahame at healthintersections.com.au / +61 411 867 065

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Units, Quantities, etc

2012-03-19 Thread michael.law...@csiro.au

Hi Linda,

I think your first example demonstrates why tablet is not a Unit -- I could 
equally say:

2 Mountains of Paracetamol 500 mg + Codeine Phosphate 15mg Mountains
is therapeutically equivalent to
1 Mountain of Paracetamol 1g + Codeine Phosphate 30 mg Mountains

Really what I am saying here is:

2 of Paracetamol 500 mg + Codeine Phosphate 15mg Tablet
is therapeutically equivalent to
1 of Paracetamol 1g + Codeine Phosphate 30 mg Tablet

In your next example, both orders are for 500mg of Amoxicllin in capsule 
form but the second case also says 1 capsule and carries with it a business 
rule that says you cannot convert this.  However, it still doesn't change the 
therapeutically equivalent relation.  That is, therapeutically equivalence 
should be treated separately from can be substituted for when dispensing.

michael

From: linda at mybirdfamily.commailto:linda at mybirdfamily.com linda at 
mybirdfamily.commailto:li...@mybirdfamily.com
Reply-To: For openEHR technical discussions openehr-technical at 
lists.openehr.orgmailto:openehr-technical at lists.openehr.org
Date: Mon, 19 Mar 2012 14:56:39 +1100
To: For openEHR technical discussions openehr-technical at 
lists.openehr.orgmailto:openehr-technical at lists.openehr.org
Subject: RE: Units, Quantities, etc

Ok ... can't resist replying ...

Doesn't 'computability' depend on having clearly defined rules on how the UOMs 
relate to each other? Yes, UCUM provides this - however I don't understand why 
(in the context of a national program), we would exclude another 
terminology-based knowledge source (e.g. a SNOMED CT extension) providing these 
computational rules.

If, for example, we referred to 2 tablets of Paracetamol 500 mg + Codeine 
Phosphate 15 mg Tablet, and we have a knowledge base that tells us that each 
of these tablets has 500 mg of Paracetamol and 15 mg of Codeine Phosphate, 
then we can compute that:
2 tablets of Paracetamol 500 mg + Codeine Phosphate 15mg Tablet
is therapeutically equivalent to
1 tablet of Paracetamol 1g + Codeine Phosphate 30 mg Tablet
This is just one of many 'computations' which are possible with an additional 
knowledge base that is very useful for decision-support purposes.

Clinicians may order 500 mg of Amoxicillin Capsules, or 1 capsule of 
Amoxicllin 500 mg Capsule ... and these actually mean different things (the 
former could either mean 1 x 500 mg capsule, 2 x 250 mg capsules, etc; while 
the later specifically means 1 x 500 mg capsule). In the case of simple dosing, 
clinicians would expect to see only 2 fields - dose_value and dose_units, 
irrespective of whether the units is mg or capsules ... with the knowledge 
base determining the 'computability' rules.

Regards,
Linda.

___
Dr Linda Bird
Information Architect
Ph: 0411 274 870



 Original Message 
Subject: Re: Units, Quantities, etc
From: Grahame Grieve grahame at 
healthintersections.com.aumailto:grah...@healthintersections.com.au
Date: Mon, March 19, 2012 12:15 pm
To: For openEHR technical discussions
openehr-technical at lists.openehr.orgmailto:openehr-technical at 
lists.openehr.org

for me, conversion between different units that are comparable. You
should ask Tom what else he thinks it yields up. I'd be interested.

Grahame


On Mon, Mar 19, 2012 at 11:06 AM, Michael.Lawley at 
csiro.aumailto:Michael.Lawley at csiro.au wrote:

 Graham,

 I'm trying to make sense of this discussion around computability -- what
 are the kinds of things that one wants to compute with these kinds of
 countable things?

 michael

 On 18/03/12 10:57 PM, Grahame Grieve
 grahame at healthintersections.com.aumailto:grahame at 
 healthintersections.com.au wrote:

Are discrete units only encountered in administrative directives? Do
you prohibit people from making observations or measurements that
include discrete units such as puffs, tablets, patches, vials, strips etc?

why?

HL7 does because we claim that you have to have UCUM codes
so the data can be computable. If people simply want to exchange
it in a structured but non-computable fashion... they can go to hell.
And as for computable: we insist on a ucum code, and then say
that for these discrete unit kind of things, well, you just put 1 for
countable units, and then put the effective unit somewhere else -
somewhere that no one can actually pull off in practice - because
this is more computable. Huh? We do not make sense on this.

So much for HL7... what's openEHR's excuse?

Grahame


On Sun, Mar 18, 2012 at 11:18 PM, Thomas Beale
thomas.beale at oceaninformatics.commailto:thomas.beale at 
oceaninformatics.com wrote:

 As Grahame mentioned on an earlier post, the question of units is
thorny.
 Although we technical people would like to mandate UCUM or some other
 well-designed computable syntax, on its own, it won't work. There seem
to be
 two reasons for this:

 

Units, Quantities, etc

2012-03-19 Thread michael.law...@csiro.au

Well I'm still stuck trying to understand what you mean by 'computable'.

And, no, a clinician cannot prescribe (just) 2 tablets -- I cannot compare 
that with 500 mg unless I know how much is in each tablet.  Once you've told 
me how much is in each tablet, then (from a computability perspective), I may 
as well have just said 2 units.

michael

From: linda at mybirdfamily.commailto:linda at mybirdfamily.com linda at 
mybirdfamily.commailto:li...@mybirdfamily.com
Reply-To: For openEHR technical discussions openehr-technical at 
lists.openehr.orgmailto:openehr-technical at lists.openehr.org
Date: Mon, 19 Mar 2012 16:26:31 +1100
To: For openEHR technical discussions openehr-technical at 
lists.openehr.orgmailto:openehr-technical at lists.openehr.org
Subject: RE: Units, Quantities, etc

Sorry Michael - I don't follow your reasoning.
In clinical practice, a clinician may either order a dose of '2 tablets' or 
alternatively '500 mg'. I would argue that these are both equally 'computable', 
given the appropriate knowledge base.

Regards,
Linda.

___
Dr Linda Bird
Information Architect
Ph: 0411 274 870



 Original Message 
Subject: Re: Units, Quantities, etc
From: Michael.Lawley at csiro.aumailto:michael.law...@csiro.au
Date: Mon, March 19, 2012 3:03 pm
To: openehr-technical at lists.openehr.orgmailto:openehr-technical at 
lists.openehr.org


Hi Linda,

I think your first example demonstrates why tablet is not a Unit -- I could 
equally say:

2 Mountains of Paracetamol 500 mg + Codeine Phosphate 15mg Mountains
is therapeutically equivalent to
1 Mountain of Paracetamol 1g + Codeine Phosphate 30 mg Mountains

Really what I am saying here is:

2 of Paracetamol 500 mg + Codeine Phosphate 15mg Tablet
is therapeutically equivalent to
1 of Paracetamol 1g + Codeine Phosphate 30 mg Tablet

In your next example, both orders are for 500mg of Amoxicllin in capsule 
form but the second case also says 1 capsule and carries with it a business 
rule that says you cannot convert this. However, it still doesn't change the 
therapeutically equivalent relation. That is, therapeutically equivalence 
should be treated separately from can be substituted for when dispensing.

michael

From: linda at mybirdfamily.commailto:linda at mybirdfamily.commailto:linda 
at mybirdfamily.com linda at mybirdfamily.commailto:linda at 
mybirdfamily.commailto:li...@mybirdfamily.com
Reply-To: For openEHR technical discussions openehr-technical at 
lists.openehr.orgmailto:openehr-technical at 
lists.openehr.orgmailto:openehr-technical at lists.openehr.org
Date: Mon, 19 Mar 2012 14:56:39 +1100
To: For openEHR technical discussions openehr-technical at 
lists.openehr.orgmailto:openehr-technical at 
lists.openehr.orgmailto:openehr-technical at lists.openehr.org
Subject: RE: Units, Quantities, etc

Ok ... can't resist replying ...

Doesn't 'computability' depend on having clearly defined rules on how the UOMs 
relate to each other? Yes, UCUM provides this - however I don't understand why 
(in the context of a national program), we would exclude another 
terminology-based knowledge source (e.g. a SNOMED CT extension) providing these 
computational rules.

If, for example, we referred to 2 tablets of Paracetamol 500 mg + Codeine 
Phosphate 15 mg Tablet, and we have a knowledge base that tells us that each 
of these tablets has 500 mg of Paracetamol and 15 mg of Codeine Phosphate, 
then we can compute that:
2 tablets of Paracetamol 500 mg + Codeine Phosphate 15mg Tablet
is therapeutically equivalent to
1 tablet of Paracetamol 1g + Codeine Phosphate 30 mg Tablet
This is just one of many 'computations' which are possible with an additional 
knowledge base that is very useful for decision-support purposes.

Clinicians may order 500 mg of Amoxicillin Capsules, or 1 capsule of 
Amoxicllin 500 mg Capsule ... and these actually mean different things (the 
former could either mean 1 x 500 mg capsule, 2 x 250 mg capsules, etc; while 
the later specifically means 1 x 500 mg capsule). In the case of simple dosing, 
clinicians would expect to see only 2 fields - dose_value and dose_units, 
irrespective of whether the units is mg or capsules ... with the knowledge 
base determining the 'computability' rules.

Regards,
Linda.

___
Dr Linda Bird
Information Architect
Ph: 0411 274 870



 Original Message 
Subject: Re: Units, Quantities, etc
From: Grahame Grieve grahame at healthintersections.com.aumailto:grahame at 
healthintersections.com.aumailto:grah...@healthintersections.com.au
Date: Mon, March 19, 2012 12:15 pm
To: For openEHR technical discussions
openehr-technical at lists.openehr.orgmailto:openehr-technical at 
lists.openehr.orgmailto:openehr-technical at lists.openehr.org

for me, conversion between 

openEHR artefact namespace identifiers

2011-04-06 Thread michael.law...@csiro.au

Note that in the SNOMED case, there are two identifiers in play: the concept 
identifier (which contains the namespace ID) and a module identifier. The idea 
is that ye namespace in the concept identifier will remain fixed and thus 
indicate the entity that originally introduced the concept, while the moduleId 
used associated with the defining entries in the release files changes to 
indicate the entity currently maintaining that concept.

michael

From: Ian McNicoll Ian.McNicoll at 
oceaninformatics.commailto:ian.mcnic...@oceaninformatics.com
Reply-To: For openEHR technical discussions openehr-technical at 
openehr.orgmailto:openehr-technical at openehr.org
Date: Wed, 6 Apr 2011 01:51:05 +1000
To: For openEHR technical discussions openehr-technical at 
openehr.orgmailto:openehr-technical at openehr.org
Subject: openEHR artefact namespace identifiers

Hi,

About a year ago Thomas published a draft of some detailed artefact 
identification proposals at 
http://www.openehr.org/svn/specification/TRUNK/publishing/architecture/am/knowledge_id_system.pdf

to help with the rapidly approaching scenario of having to cope with similarly 
named artefacts being published by different authorities. We are starting to 
see this scenario emerging  in real-world projects and whilst potential 
collisions can be managed informally for now, we will need a formal mechanism 
before long.

I would like to raise one aspect which I think might need re-thought on the 
basis of recent IHTSDO proposal for SNOMED covering the same ground.

In the pdf Thomas says

 When an archetype is moved from its original PO (e.g. a local health 
authority, or a specialist peak
body) to a more central authoring domain (e.g. a national library, openEHR.org) 
its namespace will be
changed to the new domain, as part of the review and handover process. The 
archetype's semantic
definition may or may not change. In order for tools to know that an archetype 
was not created new
locally, but was moved from another PO, an explicit reference statement can be 
made in the archetype
in the description section of an archetype as follows:

id_history = ?se.skl.epj::openEHR-EHR-EVALUATION.problem.v1?

The IHTSDO proposals cover  the same scenario i.e a SNOMED code originally 
authored in one namespace subsequently being managed in a new namespace. A good 
example might be a SNOMED term which is originally used t a national level but 
is then adopted internationally. They suggest that the term keeps its original 
authored namespace, and it is the namespace of the managing entity that 
changes, arguing that this is much less disruptive to systems that are using 
the term concerned.

I think we should consider adopting the same approach for openEHR archetypes, 
as otherwise the formal identifier of an archetype will change if a locally 
developed archetype becomes promoted to international use, a relatively common 
occurrence.

We would then need to record the current publisher so that the agency with 
current responsibility could be identified
current_publisher = ?se.skl.epj?

Thoughts would be welcome as I think we need to start making these (or 
alternative) specifications formal to enable tooling and application support to 
go ahead.

Ian

Dr Ian McNicoll
office +44 (0)1536 414994
fax +44 (0)1536 516317
mobile +44 (0)775 209 7859
skype ianmcnicoll
ian.mcnicoll at oceaninformatics.commailto:ian.mcnicoll at 
oceaninformatics.com

Clinical analyst, Ocean Informatics, UK
openEHR Clinical Knowledge Editor 
www.openehr.org/knowledgehttp://www.openehr.org/knowledge
Honorary Senior Research Associate, CHIME, UCL
BCS Primary Health Care  www.phcsg.orghttp://www.phcsg.org





constraint binding error

2011-02-21 Thread michael.law...@csiro.au

Indeed, in Australia, it would be ICD-10-AM but the version would correspond to 
the particular Edition you're using.  Hence my example URI still included the 
string SNOMED so that one knows how to interpret the v=, s=, m= elements.  
Clearly every standard terminology is going to have it's own mechanisms for 
indicating versions, etc.

But in this instance, my real point was that SCTIDs need to be used rather than 
terms.

michael


On 21/02/11 2:14 PM, pablo pazos pazospablo at hotmail.com wrote:

Hi Michael,

Not every terminology version is a date. In ICD 10, the version is 10. I 
think the version to be a valid date is not a problem here.




IHTSDO meeting - term binding presentation available

2010-05-07 Thread michael.law...@csiro.au

Yes, the workflow stuff is just a tool feature.  The RF2 spec is merely a file 
format and the spec has nothing to say about how such files may/should be 
generated.

Regarding the clinical metadata elements you mention, these are not defined as 
part of RF2, but it should be possible to represent them using RF2 as it was 
designed to be an extensible format.

michael


Dr Michael Lawley
Principal Research Scientist
The Australia e-Health Research Centre http://aehrc.com/
+61 7 3253 3609; 0432 832 067


From: openehr-technical-bounces at chime.ucl.ac.uk [openehr-technical-bounces 
at chime.ucl.ac.uk] On Behalf Of Ian McNicoll 
[ian.mcnic...@oceaninformatics.com]
Sent: Thursday, 6 May 2010 11:16 PM
To: For openEHR technical discussions
Cc: openehr-clinical at openehr.org; openehr-clinical at chime.ucl.ac.uk; 
openehr-technical at openehr.org
Subject: Re: IHTSDO meeting - term binding presentation available

Thanks Michael,

Can I ask if the workflow/process elements of the Workbench are regarded as 
separate from the Refset 2 specifications, or within other offical IHTSDO 
specs? Or is this just intended as a local feature of the workbench?

Although the Refset2 sepcifications define a greate deal of 'metadata', as far 
as I can tell , other than Refset name, this is almost wholly technical in 
nature and clinical metadata elements e.g use, misuse, purpose, authoring 
details are not defined - is this correct?

Ian

Dr Ian McNicoll
office / fax  +44(0)141 560 4657
mobile +44 (0)775 209 7859
skype ianmcnicoll
ian.mcnicoll at oceaninformatics.commailto:ian.mcnicoll at 
oceaninformatics.com
ian at mcmi.co.ukmailto:ian at mcmi.co.uk

Clinical Analyst  Ocean Informatics openEHR Archetype Editorial Group
Member BCS Primary Health Care SG Group www.phcsg.orghttp://www.phcsg.org / 
BCS Health Scotland



On 6 May 2010 13:22, Michael.Lawley at csiro.au wrote:

I would add to Eric's point 3 that (based on the content of an IHTSDO webinar) 
the workflow/process implemented in the IHTSDO workbench involves an explicit 
manual approval step for every item in the generated static refset.  I don't 
know how/if there is any special support for dealing with re-generating the 
refset based on a new SNOMED release or a modified set of specification queries.

m


Dr Michael Lawley
Principal Research Scientist
The Australia e-Health Research Centre http://aehrc.com/
+61 7 3253 3609; 0432 832 067


From: openehr-technical-bounces at 
chime.ucl.ac.ukmailto:openehr-technical-bounces at chime.ucl.ac.uk 
[openehr-technical-bounces at chime.ucl.ac.ukmailto:openehr-technical-bounces 
at chime.ucl.ac.uk] On Behalf Of Eric Browne [eric.browne at 
montagesystems.com.aumailto:eric.bro...@montagesystems.com.au]
Sent: Thursday, 6 May 2010 9:20 PM
To: For openEHR clinical discussions
Cc: For openEHR clinical discussions; Openehr-Technical
Subject: Re: IHTSDO meeting - term binding presentation available

Hi Sebastian,

If I can give my own perspective on this, having been peripherally involved for 
some time..

1. Unfortunately, the IHTSDO (www.ihtsdo.orghttp://www.ihtsdo.org), who is 
responsible for the ongoing management and development of SNOMED CT, is still a 
somewhat closed and traditional standards development organisation. It has no 
publicly accessible wiki of resources ? la openEHR. It does, however, have a 
substantial community of individuals from member countries and affiliate 
organisations and several collaborative websites and mailing lists where ideas, 
contributions, new specifications etc. are documented and evolve. I would guess 
that the majority of participants are either active in other standards 
development organisations, or staff/affiliates of member nation health 
informatics programs such as the UK's NHS Connecting for Health Program, 
Canada's Infoway, Australia's National E-Health Transition Authority, etc.

2. For many years prior to IHTSDO taking over SNOMED CT from the College of 
American Pathologists, SNOMED CT embraced a mechanism and format for producing 
subsets of SNOMED CT. About 18 months ago, proposals for a new  SNOMED 
release format and a new Reference Set format (to replace the old subset 
mechanism) emerged and evolved. These two proposals morphed into a single 
umbrella specification called Release Format 2, which has now reached Draft for 
Trial Use status within the IHTSDO. One of the specification documents covers 
Reference Set formats and is available in part 2 of RF2 at: 
http://www.ihtsdo.org/publications/draft-for-review-and-trial-use/ .  This 
draft specification includes support for language refsets, which may be of 
particular interest to you. Access to the collaborative space where these 
documents are made available is described at: 
http://www.ihtsdo.org/about-ihtsdo/collaborative-space/ .

3. To my knowledge there is no formal IHTSDO proposal for a query language to 
express Refset 

IHTSDO meeting - term binding presentation available

2010-05-06 Thread michael.law...@csiro.au

I would add to Eric's point 3 that (based on the content of an IHTSDO webinar) 
the workflow/process implemented in the IHTSDO workbench involves an explicit 
manual approval step for every item in the generated static refset.  I don't 
know how/if there is any special support for dealing with re-generating the 
refset based on a new SNOMED release or a modified set of specification queries.

m


Dr Michael Lawley
Principal Research Scientist
The Australia e-Health Research Centre http://aehrc.com/
+61 7 3253 3609; 0432 832 067


From: openehr-technical-bounces at chime.ucl.ac.uk [openehr-technical-bounces 
at chime.ucl.ac.uk] On Behalf Of Eric Browne [eric.bro...@montagesystems.com.au]
Sent: Thursday, 6 May 2010 9:20 PM
To: For openEHR clinical discussions
Cc: For openEHR clinical discussions; Openehr-Technical
Subject: Re: IHTSDO meeting - term binding presentation available

Hi Sebastian,

If I can give my own perspective on this, having been peripherally involved for 
some time..

1. Unfortunately, the IHTSDO (www.ihtsdo.org), who is responsible for the 
ongoing management and development of SNOMED CT, is still a somewhat closed and 
traditional standards development organisation. It has no publicly accessible 
wiki of resources ? la openEHR. It does, however, have a substantial community 
of individuals from member countries and affiliate organisations and several 
collaborative websites and mailing lists where ideas, contributions, new 
specifications etc. are documented and evolve. I would guess that the majority 
of participants are either active in other standards development organisations, 
or staff/affiliates of member nation health informatics programs such as the 
UK's NHS Connecting for Health Program, Canada's Infoway, Australia's National 
E-Health Transition Authority, etc.

2. For many years prior to IHTSDO taking over SNOMED CT from the College of 
American Pathologists, SNOMED CT embraced a mechanism and format for producing 
subsets of SNOMED CT. About 18 months ago, proposals for a new  SNOMED 
release format and a new Reference Set format (to replace the old subset 
mechanism) emerged and evolved. These two proposals morphed into a single 
umbrella specification called Release Format 2, which has now reached Draft for 
Trial Use status within the IHTSDO. One of the specification documents covers 
Reference Set formats and is available in part 2 of RF2 at: 
http://www.ihtsdo.org/publications/draft-for-review-and-trial-use/ .  This 
draft specification includes support for language refsets, which may be of 
particular interest to you. Access to the collaborative space where these 
documents are made available is described at: 
http://www.ihtsdo.org/about-ihtsdo/collaborative-space/ .

3. To my knowledge there is no formal IHTSDO proposal for a query language to 
express Refset membership specifications. However, the IHTSDO Terminology 
Workbench does incorporate quite a sophisticated mechanism for building refsets 
using an underlying ( and evolving) query-based expression language. Note: 
these refsets do not necessarily need to be specific to SNOMED. The refset 
specifications, however, are currently designed to  construct  static files for 
distribution alongside the SNOMED core and national extension files, rather 
than for producing dynamically evaluated termsets for  local needs, as might be 
supported for openEHR templates, say.

eric


On 2010-05-06, at 5:48 PM, Sebastian Garde wrote:

 Hi Thomas,

 do you know if there is a formal way of how RefSets (=the resulting Snomed CT 
 codes etc.) and the RefSet query (=the query on Snomed CT to get to the 
 RefSet) are expressed and shared?
 Similar to what is described here but based on RefSets: 
 http://www.openehr.org/wiki/display/term/Ocean+Terminology+Query+Language+%28TQL%29

 I agree that RefSets are a good way forward, but they need to be available, 
 reusable and sharable, etc.

 Sebastian

 Thomas Beale wrote:

 I attended the IHTSDO meeting just finished in Copenhagen. Things look 
 pretty good for where SNOMED CT is going generally - the RF2 technical 
 infrastructure seems relatively well designed. There is a lot of activity in 
 content modeling, the IHTSDO workbench and many other areas relevant to 
 openEHR. Converely, I believe openEHR will be very important to make SNOMED 
 CT work in many places, since it will be via archetypes, templates and 
 associated ref sets that information systems will be able to connect to 
 terminology in a disciplined way. I believe that ref sets are the future of 
 SNOMED CT (and any terminology for that matter) in use in real systems.

 I was asked to present a view from openEHR about 'terminology binding', i.e. 
 connecting terminology and information models. My presentation is on this 
 page http://www.openehr.org/wiki/display/term/Terminology+Binding
 or see the following direct links:
  ? PDF - 
 

Term bindings in archetypes and templates

2010-03-11 Thread michael.law...@csiro.au

Hi Mikael,

You may be interested in our mapping tool, Snapper, which is designed to tackle 
this problem for mapping to (not from) SNOMED CT.  It provides extensive 
support for mapping to post-coordinated expressions where single-concept maps 
are not possible and can be used to create unofficial extensions to SNOMED CT.

More details and a short screen-cast are on our website http://aehrc.com/snapper

Cheers,
michael

--
Dr Michael Lawley
Principal Research Scientist
The Australia e-Health Research Centre http://aehrc.com/
+61 7 3253 3609; 0432 832 067

Ein Fl?gel und einen Schnabel machen kein Vogel


On 11/03/10 9:49 AM, Mikael Nystr?m mikael.nystrom at liu.se wrote:

Thomas Beale wrote:

 On 10/03/2010 22:16, Mikael Nystr?m wrote:

 I belong to a group that, except for openEHR related research, also do
 research about terminology systems and terminology systems mapping.
 During mapping from one terminology system to another terminology
 system is it quite common to be unable to map properly, because the two
 terminology systems have divided the domain in different ways. This
 problem appears even when mapping to SNOMED CT, which have a broad
 coverage and a concept model allowing a broad set of relationships. My
 view is that the same problem will appear when finalized archetypes are
 bound to existing terminology systems.

 it will certainly appear. The question is: for those archetype nodes that
 it is useful to bind to terminology (likely to be 10% or less), how close
 is the match? For example, in labs, it should be nearly spot on. For
 anatomy, it should be pretty close. For diseases, the disease concept in
 an archetype will assume that it is coded in the first place by
 terminology, so the only problem there is mapping problems from ICD to SCT
 etc. I think we need to look at the actual size of the concrete problem,
 not its theoretical worst case.

I agree that we have to wait and see how much problems we will get. That was
also my reason to reply to Sebastian's e-mail which told that there is no
problem to add terminology bindings after the archetypes are finalized.

However, I didn't refer to theoretical worst case. I referred to actual
problems that have appeared for us during both our research work and in our
national SNOMED CT project in Sweden.

Greetings,
Mikael


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