RE: information about allowable data in a openEHR format

[Bjørn Næss]

Hi Dave
Your use-case is to create data into an EHR. You have different kind of data 
like problem/diagnosis<http://openehr.org/ckm/#showArchetype_1013.1.169>, 
medications<http://openehr.org/ckm/#showArchetype_1013.1.1445>, 
procedures<http://openehr.org/ckm/#showArchetype_1013.1.204>, 
height<http://openehr.org/ckm/#showArchetype_1013.1.138> and 
weight<http://openehr.org/ckm/#showArchetype_1013.1.2960>. These are all 
archetypes in openEHR and I have provided links to them above.

What you need to do is to create a Template based on these archetypes. Based on 
this Template you can create Compositions. Compositions are documents or 
transactions containing data into an openEHR system.

There are several ways to serialize this data. Both JSON and XML are used in 
production systems today.

Vennlig hilsen
Bjørn Næss
Produktansvarlig
DIPS ASA

Mobil +47 93 43 29 10

From: openEHR-technical [mailto:openehr-technical-boun...@lists.openehr.org] On 
Behalf Of Monaghan, David S
Sent: onsdag 22. november 2017 15:40
To: openehr-technical@lists.openehr.org
Subject: RE: information about allowable data in a openEHR format

Hey all,
Apologies for asking what is probably a simple question but I’m just starting 
out in this space now.
My question is:
If I have a patient record with ICD-9 and ICD-10 codes, Pharmacy codes, 
procedure codes, patient data such as age, sex, height, weight etc. and also 
free form clinical notes. Can I store all this kinda of data in a openEHR 
format? And if so could you provide me with a sample json of what that kind of 
patient record would look like?

Or point me in the right direction?

Thanks so much

Kind regards
Dave

Dr David Monaghan  | Optum
Lead Machine Learning Researcher – Product Engineering and Data Solutions
BLOCK C, SPENCER DOCK, Dublin, Ireland
T +353 749 200 436
E david_monag...@optum.com<mailto:david_monag...@optum.com>
www.optum.com<http://www.optum.com/>

Our United Culture  The way forward
Integrity  |  Compassion  |  Relationships  |  Innovation  |  Performance

Optum Services (Ireland) Limited, a private company limited by shares, 
registered in Ireland with company number 579794 and with its registered office 
at 70 Sir John Rogerson's Quay, Dublin 2.





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RE: information about allowable data in a openEHR format

[Pablo Pazos]

Hi David,

The openEHR model can store codes data from any terminology and use any
kind of structure, that is defined in archetypes and templates.

Why do you need json to understand openEHR data storage? Are you using a
json database?

Json is not part of the specifications, but there is a standard XML schema
available. They XML can be transformed to json with two lines of code.

I have tools that generate test documents with dummy data on openEHR XML.
All open source.

Regards,
Pablo.


On Nov 22, 2017 11:45 AM, "Monaghan, David S" 
wrote:

Hey all,

Apologies for asking what is probably a simple question but I’m just
starting out in this space now.

My question is:

If I have a patient record with ICD-9 and ICD-10 codes, Pharmacy codes,
procedure codes, patient data such as age, sex, height, weight etc. and
also free form clinical notes. Can I store all this kinda of data in a
openEHR format? And if so could you provide me with a sample json of what
that kind of patient record would look like?



Or point me in the right direction?



Thanks so much



Kind regards

Dave



*Dr David Monaghan  **| Optum*

Lead Machine Learning Researcher – Product Engineering and Data Solutions

BLOCK C, SPENCER DOCK, Dublin, Ireland

T +353 749 200 436

E david_monag...@optum.com

*www.optum.com *



*Our United Culture  *The way forward

Integrity  |  Compassion  |  Relationships  |  Innovation  |  Performance



Optum Services (Ireland) Limited, a private company limited by shares,
registered in Ireland with company number 579794 and with its registered
office at 70 Sir John Rogerson's Quay, Dublin 2.










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Re: information about allowable data in a openEHR format

[Dileep V S]

Dear David,

OpenEHR supports a wide variety of data types. Please refer to
http://openehr.org/releases/RM/latest/docs/data_types/data_types.html for
more details on the data types supported. That said the simple answer to
your question is that all that you are looking for are supported. You can
also have a look at some of the large number of archetypes available in the
OpenEHR CKM (http://www.openehr.org/ckm/) to see how each of the data types
have been used in practice.

As for how a patient record looks, a patient record in OpenEHR is made up
of independent compositions, which are instances of use case driven
templates. Templates in turn are made up of one or more archetypes. So a
patient record can contain multiple JSONs(each representing a composition).

As per my understanding, the JSON structure of compositions can vary
depending upon the implementation. The following link has more details on
the JSON format used by Ethercis (an opensource OpenEHR server
implementation)

https://github.com/ethercis/ethercis/blob/master/doc/flat%20json.md

I hope that helps

regards

Dileep V S
*Founder*
HealtheLife Ventures LLP
m: +91 9632888113
a: 103, Innovation Centre, IIIT, Electronics City, Bangalore 560100
w: healthelife.in  e: dil...@healthelife.in

On Wed, Nov 22, 2017 at 8:10 PM, Monaghan, David S  wrote:

> Hey all,
>
> Apologies for asking what is probably a simple question but I’m just
> starting out in this space now.
>
> My question is:
>
> If I have a patient record with ICD-9 and ICD-10 codes, Pharmacy codes,
> procedure codes, patient data such as age, sex, height, weight etc. and
> also free form clinical notes. Can I store all this kinda of data in a
> openEHR format? And if so could you provide me with a sample json of what
> that kind of patient record would look like?
>
>
>
> Or point me in the right direction?
>
>
>
> Thanks so much
>
>
>
> Kind regards
>
> Dave
>
>
>
> *Dr David Monaghan  **| Optum*
>
> Lead Machine Learning Researcher – Product Engineering and Data Solutions
>
> BLOCK C, SPENCER DOCK, Dublin, Ireland
>
> T +353 749 200 436
>
> E david_monag...@optum.com
>
> *www.optum.com *
>
>
>
> *Our United Culture  *The way forward
>
> Integrity  |  Compassion  |  Relationships  |  Innovation  |  Performance
>
>
>
> Optum Services (Ireland) Limited, a private company limited by shares,
> registered in Ireland with company number 579794 and with its registered
> office at 70 Sir John Rogerson's Quay, Dublin 2.
>
>
>
>
>
>
>
>
>
>
> This e-mail, including attachments, may include confidential and/or
> proprietary information, and may be used only by the person or entity
> to which it is addressed. If the reader of this e-mail is not the intended
> recipient or his or her authorized agent, the reader is hereby notified
> that any dissemination, distribution or copying of this e-mail is
> prohibited. If you have received this e-mail in error, please notify the
> sender by replying to this message and delete this e-mail immediately.
>
> ___
> openEHR-technical mailing list
> openEHR-technical@lists.openehr.org
> http://lists.openehr.org/mailman/listinfo/openehr-
> technical_lists.openehr.org
>
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RE: information about allowable data in a openEHR format

[Monaghan, David S]

Hey all,
Apologies for asking what is probably a simple question but I’m just starting 
out in this space now.
My question is:
If I have a patient record with ICD-9 and ICD-10 codes, Pharmacy codes, 
procedure codes, patient data such as age, sex, height, weight etc. and also 
free form clinical notes. Can I store all this kinda of data in a openEHR 
format? And if so could you provide me with a sample json of what that kind of 
patient record would look like?

Or point me in the right direction?

Thanks so much

Kind regards
Dave

Dr David Monaghan  | Optum
Lead Machine Learning Researcher – Product Engineering and Data Solutions
BLOCK C, SPENCER DOCK, Dublin, Ireland
T +353 749 200 436
E david_monag...@optum.com
www.optum.com

Our United Culture  The way forward
Integrity  |  Compassion  |  Relationships  |  Innovation  |  Performance

Optum Services (Ireland) Limited, a private company limited by shares, 
registered in Ireland with company number 579794 and with its registered office 
at 70 Sir John Rogerson's Quay, Dublin 2.





This e-mail, including attachments, may include confidential and/or
proprietary information, and may be used only by the person or entity
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