[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-11-18 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659

Ryan Curtin  changed:

   What|Removed |Added

 Status|ON_QA   |CLOSED
 Resolution|--- |RAWHIDE
Last Closed||2019-11-19 03:42:39



--- Comment #26 from Ryan Curtin  ---
Oh, definitely, I just forgot to.  Thank you again for your help!

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-11-18 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #25 from Elliott Sales de Andrade  ---
Everything's stable now; can't we close this?

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-07-25 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #24 from Fedora Update System  ---
ensmallen-1.15.1-1.el7 has been pushed to the Fedora EPEL 7 stable repository.
If problems still persist, please make note of it in this bug report.

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-07-19 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #23 from Fedora Update System  ---
ensmallen-1.15.1-1.fc29 has been pushed to the Fedora 29 stable repository. If
problems still persist, please make note of it in this bug report.

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-07-18 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #22 from Fedora Update System  ---
ensmallen-1.15.1-1.fc30 has been pushed to the Fedora 30 stable repository. If
problems still persist, please make note of it in this bug report.

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-07-10 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #21 from Fedora Update System  ---
ensmallen-1.15.1-1.fc29 has been pushed to the Fedora 29 testing repository. If
problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here:
https://bodhi.fedoraproject.org/updates/FEDORA-2019-b5dbfb1cb5

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-07-10 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #20 from Fedora Update System  ---
ensmallen-1.15.1-1.el7 has been pushed to the Fedora EPEL 7 testing repository.
If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here:
https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2019-96c517757d

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-07-10 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659

Fedora Update System  changed:

   What|Removed |Added

 Status|MODIFIED|ON_QA



--- Comment #19 from Fedora Update System  ---
ensmallen-1.15.1-1.fc30 has been pushed to the Fedora 30 testing repository. If
problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here:
https://bodhi.fedoraproject.org/updates/FEDORA-2019-e5d4aeaacc

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-07-10 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #18 from Fedora Update System  ---
FEDORA-EPEL-2019-96c517757d has been submitted as an update to Fedora EPEL 7.
https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2019-96c517757d

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-07-09 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #17 from Fedora Update System  ---
FEDORA-2019-b5dbfb1cb5 has been submitted as an update to Fedora 29.
https://bodhi.fedoraproject.org/updates/FEDORA-2019-b5dbfb1cb5

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-07-09 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659

Fedora Update System  changed:

   What|Removed |Added

 Status|POST|MODIFIED



--- Comment #16 from Fedora Update System  ---
FEDORA-2019-e5d4aeaacc has been submitted as an update to Fedora 30.
https://bodhi.fedoraproject.org/updates/FEDORA-2019-e5d4aeaacc

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-07-08 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #15 from Gwyn Ciesla  ---
(fedscm-admin):  The Pagure repository was created at
https://src.fedoraproject.org/rpms/ensmallen

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-06-11 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #14 from Elliott Sales de Andrade  ---
No, it's approved already.

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-06-08 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #13 from Ryan Curtin  ---
Thanks!  And you're right, I did change the spec file after building the SRPM,
but in this case I only changed comments.  Sorry for any confusion.

Does anything else need to be done by me here?  And thanks again.

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-06-05 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659

Elliott Sales de Andrade  changed:

   What|Removed |Added

 Status|ASSIGNED|POST
  Flags|fedora-review?  |fedora-review+



--- Comment #12 from Elliott Sales de Andrade  ---
Your spec and srpm are not in sync; be sure to use the right one when you
import it.

Approved.

Package Review
==

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed



= MUST items =

C/C++:
[x]: Package does not contain kernel modules.
[x]: Package contains no static executables.
[x]: If your application is a C or C++ application you must list a
 BuildRequires against gcc, gcc-c++ or clang.
[x]: Package does not contain any libtool archives (.la)
[x]: Rpath absent or only used for internal libs.

Generic:
[x]: Package is licensed with an open-source compatible license and meets
 other legal requirements as defined in the legal section of Packaging
 Guidelines.
[x]: License field in the package spec file matches the actual license.
 Note: Checking patched sources after %prep for licenses. Licenses
 found: "Unknown or generated", "BSD 3-clause "New" or "Revised"
 License", "Boost Software License BSL BSD 3-clause "New" or "Revised"
 License", "*No copyright* BSL". 253 files have unknown license.
 Detailed output of licensecheck in 1706659-ensmallen/licensecheck.txt
[x]: %build honors applicable compiler flags or justifies otherwise.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[x]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
 names).
[x]: Package is named according to the Package Naming Guidelines.
[?]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
 Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Useful -debuginfo package or justification otherwise.
[x]: Package is not known to require an ExcludeArch tag.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
 one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
 Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
 license(s) in its own file, then that file, containing the text of the
 license(s) for the package is included in %license.
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
 beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
 work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
 provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
 %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Large documentation must go in a -doc subpackage. Large could be size
 (~1MB) or number of files.
 Note: Documentation size is 0 bytes in 0 files.
[x]: Packages must not store files under /srv, /opt or /usr/local

= SHOULD items =

Generic:
[-]: If the source package does not include license text(s) as a separate
 file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[?]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[-]: Description and summary sections in the package spec file contains
 translations for supported Non-English languages, if available.
[?]: Package should compile and build into binary rpms on all supported
 architectures.
[x]: 

[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-06-04 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #11 from Ryan Curtin  ---
Ah, good point, disabling the SmallLovaszThetaSdp test is the better way to go.
 I'll try to keep digging and report a bug to the right place.

The spec and SRPM are updated now; let me know what you think:

http://www.ratml.org/misc/ensmallen.spec
http://www.ratml.org/misc/ensmallen-1.15.1-1.fc31.src.rpm

Thanks again for your review and help with this. :)

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-06-04 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #10 from Elliott Sales de Andrade  ---
That indicates a real error:
https://access.redhat.com/blogs/766093/posts/1976213 Please report a bug for
it.

Instead of disabling all the flags (and then possibly forgetting to re-enable
them), I would skip the broken test instead by running: ./ensmallen_tests
~SmallLovaszThetaSdp

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-05-31 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #9 from Ryan Curtin  ---
It took a while but I determined that the CXXFLAGS used by the %cmake macro
cause the problem.  Specifically, the -D_FORTIFY_SOURCE option causes the
segfault.  In any case, since ensmallen is not actually distributing that code
and since the bug lies in some lower level library, I simply rewrote the spec
to not use that particular flag.

http://www.ratml.org/misc/ensmallen.spec
http://www.ratml.org/misc/ensmallen-1.15.1-1.fc31.src.rpm

(I also updated the version.)

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-05-26 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #8 from Elliott Sales de Andrade  ---
Well, unfortunately, it doesn't work on either Rawhide or F30 in koji:

https://koji.fedoraproject.org/koji/taskinfo?taskID=35079859
https://koji.fedoraproject.org/koji/taskinfo?taskID=35080468

which is where you'll have to build it...

Only failing on x86_64 is suspicious though, and looks a bit familiar. This may
be an OpenBLAS (or something linking to it) bug.

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-05-26 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #7 from Ryan Curtin  ---
I tried reproducing the issue in an fc31 docker container by running the tests
over and over with different random seeds, but I wasn't able to reproduce it at
all.  It does look like a lower-level Armadillo bug perhaps, but even if I
wanted to figure out what was going on and submit a patch I can't make heads or
tails of the actual issue.

What do you think?  The package builds and tests successfully on my system (and
the multiple Docker images I tested), so I don't know if it's worth digging
into (unless I can reproduce it, which I currently can't).

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-05-25 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #6 from Elliott Sales de Andrade  ---
Here is the backtrace if it's helpful? It looks like something is going wrong
in armadillo though.

#0  0x5564ebb4 in arma::Mat::~Mat (this=0x1,
__in_chrg=) at /usr/include/armadillo_bits/Mat_meat.hpp:23
#1  0x5574a594 in arma::auxlib::chol_band_common
(layout=, KD=, X=...)
at /usr/include/bits/string_fortified.h:34
#2  arma::auxlib::chol_band (layout=, KD=, X=...) at /usr/include/armadillo_bits/auxlib_meat.hpp:2008
#3  arma::op_chol::apply_direct > (A_expr=...,
layout=, out=...) at
/usr/include/armadillo_bits/op_chol_meat.hpp:72
#4  arma::op_chol::apply_direct > (layout=,
A_expr=..., out=...) at /usr/include/armadillo_bits/op_chol_meat.hpp:43
#5  arma::chol > (out=..., X=...,
layout=layout@entry=0x5578b6e4 "lower") at
/usr/include/armadillo_bits/fn_chol.hpp:59
#6  0x5573ae70 in ens::Alpha (A=..., dA=..., tau=0.98999,
alpha=@0x7fffb900: 4.9406564584124654e-323)
at
/builddir/build/BUILD/ensmallen-1.14.2/include/ensmallen_bits/sdp/primal_dual_impl.hpp:127
#7  0x55760ae6 in ens::PrimalDualSolver >
>::Optimize (this=this@entry=0x7fffd620, X=..., ysparse=..., 
ydense=..., Z=...) at /usr/include/armadillo_bits/Glue_meat.hpp:47
#8  0x5573f9df in C_A_T_C_HT_E_S_T2 () at
/builddir/build/BUILD/ensmallen-1.14.2/tests/sdp_primal_dual_test.cpp:296
#9  0x555ee1f7 in Catch::TestCase::invoke (this=) at
/usr/include/c++/9/bits/shared_ptr_base.h:1020
#10 Catch::RunContext::invokeActiveTestCase (this=0x7fffe0c0) at
/builddir/build/BUILD/ensmallen-1.14.2/tests/catch.hpp:9745
#11 0x55601c7f in Catch::RunContext::runCurrentTest
(this=0x7fffe0c0, redirectedCout="", redirectedCerr="")
at /builddir/build/BUILD/ensmallen-1.14.2/tests/catch.hpp:9719
#12 0x55612280 in Catch::RunContext::runTest (this=0x7fffe0c0,
testCase=...)
at /builddir/build/BUILD/ensmallen-1.14.2/tests/catch.hpp:9495
#13 0x556167de in Catch::(anonymous namespace)::runTests
(config=std::shared_ptr (use count 4, weak count 0) = {...})
at /builddir/build/BUILD/ensmallen-1.14.2/tests/catch.hpp:10035
#14 Catch::Session::runInternal (this=0x7fffe320) at
/builddir/build/BUILD/ensmallen-1.14.2/tests/catch.hpp:10236
#15 0x55616c6f in Catch::Session::run (this=0x7fffe320) at
/builddir/build/BUILD/ensmallen-1.14.2/tests/catch.hpp:10193
#16 0x555e0ddb in Catch::Session::run (argv=0x7fffe598, argc=1,
this=0x7fffe320)
at /builddir/build/BUILD/ensmallen-1.14.2/tests/catch.hpp:10161
#17 Catch::Session::run (argv=0x7fffe598, argc=1, this=0x7fffe320) at
/builddir/build/BUILD/ensmallen-1.14.2/tests/catch.hpp:10156
#18 main (argc=1, argv=0x7fffe598) at
/builddir/build/BUILD/ensmallen-1.14.2/tests/main.cpp:33


What versions of everything do you get? Is one of us outdated somewhere?

Dependencies resolved.
==
 Package  Architecture   
Version   Repository   Size
==
Installing:
 armadillo-devel  x86_64 
9.400.3-1.fc31fedora  1.4 M
 cmakex86_64 
3.14.4-1.fc31 fedora  8.9 M
 gcc-c++  x86_64 
9.1.1-1.fc31  fedora   12 M
Installing dependencies:
 SuperLU  x86_64 
5.2.1-6.fc30  fedora  169 k
 SuperLU-develx86_64 
5.2.1-6.fc30  fedora   23 k
 annobin  x86_64 
8.76-1.fc31   fedora  180 k
 armadillox86_64 
9.400.3-1.fc31fedora   26 k
 arpack   x86_64 
3.5.0-6.fc28  fedora  195 k
 arpack-devel x86_64 
3.5.0-6.fc28  fedora   12 k
 atlasx86_64 
3.10.3-8.fc30 fedora  6.3 M
 atlas-devel

[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-05-23 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #5 from Ryan Curtin  ---
I should add, since ensmallen is header-only, the tests are primarily of
importance for ensuring everything compiles.  They are also tests of the
internal optimizers, but given that during development the issue you see hasn't
been encountered at all, I'm not sure we can effectively resolve it at the
packaging level.  We could report it upstream (although I am part of upstream
:)) but I have no idea how long it will take to even reproduce, and I don't
know if it makes sense to hold up adding the package on that.  (Especially
since adding ensmallen is a dependency for new versions of mlpack, so mlpack
can't be updated until then.)

Let me know what you think, and thanks again for your time. :)

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-05-23 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #4 from Ryan Curtin  ---
Hi Elliott, I spent a while working with it but I can't reproduce the segfault
at all (I ran with tons of different random seeds).  Do you think we should
then just ignore running the tests in this case?

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-05-16 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #3 from Elliott Sales de Andrade  ---
Putting %package and %description all the way at the end there is a bit odd;
it's usually before %prep.

Unfortunately, the tests segfault for me:

+ ./ensmallen_tests
ensmallen version: 1.14.2 (Difficult Crimp) 
armadillo version: 9.400.3 (Surrogate Miscreant)
~~~
ensmallen_tests is a Catch v2.4.1 host application.
Run with -? for options
---
SmallLovaszThetaSdp
---
/builddir/build/BUILD/ensmallen-1.14.2/tests/sdp_primal_dual_test.cpp:286
...
/builddir/build/BUILD/ensmallen-1.14.2/tests/sdp_primal_dual_test.cpp:286:
FAILED:
due to a fatal error condition:
  SIGSEGV - Segmentation violation signal
===
test cases:  102 |  101 passed | 1 failed
assertions: 5732 | 5731 passed | 1 failed
BUILDSTDERR: /var/tmp/rpm-tmp.xRlIat: line 31:   628 Segmentation fault 
(core dumped) ./ensmallen_tests

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-05-12 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659



--- Comment #2 from Ryan Curtin  ---
Hi Elliott,

Thanks so much for your quick review.  I handled each of the issues you pointed
out and updated https://www.ratml.org/misc/ensmallen.spec and
https://www.ratml.org/misc/ensmallen-1.14.2-1.fc30.src.rpm.

> - The URL and Source look like they can use https://.

Yeah, you're right, fixed.

> - rm -rf $RPM_BUILD_ROOT should be removed

Oops, didn't realize this was unnecessary.  Gone now.

> - You do not need to install LICENSE.txt manually; just list it as a relative 
> path and it will be installed for you.

Ah, nice!  I didn't know that.  Thanks.

> - Summary should not end in a period.

Fixed.

> - If you've built the tests, why not run them in %check?

Good point, they run in %check now.

> - %changelog is missing version-release

Oops, simple oversight.  Fixed now.

> - This fails to build for me due to missing armadillo; why is it not in 
> BuildRequires also? (I don't think a new enough armadillo is packaged in 
> Fedora, though.)

Ah, yeah, you're right, Armadillo should be `BuildRequires` also.  It is now,
and the versions in Fedora should be new enough that it isn't a problem
(6.500.0 or newer is necessary, and that was quite a while ago now).

Let me know if you see any other issues and I'll get them handled.

Thanks again!

Ryan

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[Bug 1706659] Review Request: ensmallen - header-only C++ library for efficient mathematical optimization

2019-05-08 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1706659

Elliott Sales de Andrade  changed:

   What|Removed |Added

 Status|NEW |ASSIGNED
 CC||quantum.anal...@gmail.com
   Assignee|nob...@fedoraproject.org|quantum.anal...@gmail.com
  Flags||fedora-review?



--- Comment #1 from Elliott Sales de Andrade  ---
- The URL and Source look like they can use https://.
- rm -rf $RPM_BUILD_ROOT should be removed
- You do not need to install LICENSE.txt manually; just list it as a relative
path and it will be installed for you.
- Summary should not end in a period.
- If you've built the tests, why not run them in %check?
- %changelog is missing version-release
- This fails to build for me due to missing armadillo; why is it not in
BuildRequires also? (I don't think a new enough armadillo is packaged in
Fedora, though.)

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