[Paraview] Change input action crashes my ParaView

2009-10-20 Thread Jérôme
Hi,

I have Paraview3 from CVS. When I want to change the inputs of a filter that
has multiple inputs, I get this message:

   QAbstractItemModel::endRemoveRows:  Invalid index ( 1 , 0 ) in model
pqPipelineModel(0x8fa51c8)

And then ParaView seg-faults. Could someone confirm that this is a bug by
following these basic steps?

- Add a Sphere source - Apply
- Add an Axes source - Apply
- Connect a Glyph with custom source to sphere
   - this will open an Input editor dialog with Sphere as input and
nothing as source.
   - Choose Axes as source
   - Ok, Apply
- Normally, you should have axes object at each sphere point (note: default
scale is 0!! have to change in order to see them...)
- Now, entering the bug: right click on Glyph in pipeline - Change input
- Input editor dialog is opening: Click on source radio button
- Choose Sphere in the pipeline - At this stage I get the QAbstractItem
error message
- Click OK: ParaView ends, seg fault.

I noted this behaviour on WinXP 32, Fedora9-x86_32, Fedora11-x86_32 and
Fedora11-x86_64.
Please note that it could complete the bug #9312 on mantis, since this
append not only when deleting the multiple input filter but also by changing
the inputs...

Thanks,
Jerome
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Re: [Paraview] Change input action crashes my ParaView

2009-10-20 Thread Utkarsh Ayachit
Yup, this is indeed a bug that surfaced since we upgraded to Qt 4.5.
We will be looking at it for 3.8.

Utkarsh

On Tue, Oct 20, 2009 at 9:24 AM, Jérôme jerome.ve...@gmail.com wrote:
 Hi,

 I have Paraview3 from CVS. When I want to change the inputs of a filter that
 has multiple inputs, I get this message:

    QAbstractItemModel::endRemoveRows:  Invalid index ( 1 , 0 ) in model
 pqPipelineModel(0x8fa51c8)

 And then ParaView seg-faults. Could someone confirm that this is a bug by
 following these basic steps?

 - Add a Sphere source - Apply
 - Add an Axes source - Apply
 - Connect a Glyph with custom source to sphere
    - this will open an Input editor dialog with Sphere as input and
 nothing as source.
    - Choose Axes as source
    - Ok, Apply
 - Normally, you should have axes object at each sphere point (note: default
 scale is 0!! have to change in order to see them...)
 - Now, entering the bug: right click on Glyph in pipeline - Change input
 - Input editor dialog is opening: Click on source radio button
 - Choose Sphere in the pipeline - At this stage I get the QAbstractItem
 error message
 - Click OK: ParaView ends, seg fault.

 I noted this behaviour on WinXP 32, Fedora9-x86_32, Fedora11-x86_32 and
 Fedora11-x86_64.
 Please note that it could complete the bug #9312 on mantis, since this
 append not only when deleting the multiple input filter but also by changing
 the inputs...

 Thanks,
 Jerome

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Re: [Paraview] PV 3.4.0

2009-10-20 Thread Stephen Wornom

Berk Geveci wrote:

I use PV 3.4.0 and doing animations requires that I cannot change my screen
while the animation frames are being made. There are 800 sets of data so it
takes time during which I cannot work.
The offscreen option made help but I believe that it has been reported that
a bug exists in 3.4.0 when using it. Has the offscreen bug been fixed in
later releases?



It depends on what you mean :-) The bug has always been on the
graphics card drivers. If you have a somewhat recent graphics card
that is not one of the piece-of-crap Intel cards, it should work. I'd
suggest trying it out.

  


Nvidia Quadro FX 3500 card

Is this a good graphics card?
Stephen

--
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2004 route des lucioles - BP93
Sophia Antipolis
06902 CEDEX

Tel: 04 92 38 50 54
Fax: 04 97 15 53 51

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Re: [Paraview] PV 3.4.0

2009-10-20 Thread Paul Edwards
Are you running linux?  And, if so, have you installed the nvidia
graphics drivers?

Regards,
Paul

2009/10/20 Stephen Wornom stephen.wor...@sophia.inria.fr:
 Berk Geveci wrote:

 I use PV 3.4.0 and doing animations requires that I cannot change my
 screen
 while the animation frames are being made. There are 800 sets of data so
 it
 takes time during which I cannot work.
 The offscreen option made help but I believe that it has been reported
 that
 a bug exists in 3.4.0 when using it. Has the offscreen bug been fixed in
 later releases?


 It depends on what you mean :-) The bug has always been on the
 graphics card drivers. If you have a somewhat recent graphics card
 that is not one of the piece-of-crap Intel cards, it should work. I'd
 suggest trying it out.



 Nvidia Quadro FX 3500 card

 Is this a good graphics card?
 Stephen

 --
 stephen.wor...@sophia.inria.fr
 2004 route des lucioles - BP93
 Sophia Antipolis
 06902 CEDEX

 Tel: 04 92 38 50 54
 Fax: 04 97 15 53 51


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Re: [Paraview] PV 3.4.0

2009-10-20 Thread Paul Edwards
Try running nvidia-settings.  This is the configuration program the
comes with the nvidia drivers.  If you have superuser access to your
system you can download the latest version of the nvidia drivers from
here:

http://www.nvidia.com/object/unix.html

Regards,
Paul


2009/10/20 Stephen Wornom stephen.wor...@sophia.inria.fr:
 Paul Edwards wrote:

 Are you running linux?  And, if so, have you installed the nvidia
 graphics drivers?


 Thanks Paul,
 yes to linux, but how do I tell what drivers are installed?
 Stephen

 Regards,
 Paul


 Nvidia Quadro FX 3500 card

 Is this a good graphics card?
 Stephen

 --
 stephen.wor...@sophia.inria.fr
 2004 route des lucioles - BP93
 Sophia Antipolis
 06902 CEDEX

 Tel: 04 92 38 50 54
 Fax: 04 97 15 53 51


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 Tel: 04 92 38 50 54
 Fax: 04 97 15 53 51


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Re: [Paraview] Problems with Paraview 3.6.1 on cluster (client - server mode)

2009-10-20 Thread Moreland, Kenneth
Could it be a problem with mismatched libraries?  I notice in the error below 
that it occurs in /usr/lib/libGL.so.1.  This is a system library.  Did you 
compile OSMesa yourself?  If so, then you should not be using the system GL 
libraries; you should be using the libraries that you compiled when you also 
generated the OSMesa library.

-Ken


On 10/20/09 1:56 AM, myaccountmail9 myaccountmail9 myaccountma...@gmail.com 
wrote:

Hi,
we have a Linux (Debian) cluster without gpu and we have a big problem using 
Paraview 3.6.1in client - server mode.
The server has been compiled with OSMesa library and following the instructions 
reported here (in particular the section OSMesa support):

http://www.itk.org/Wiki/Setting_up_a_ParaView_Server

If we try to connect the client started with the command:

paraview

and the server, started with the command:

pvserver --use-offscreen-rendering

we must disable the checkbox Remote rendering threshold (but this causes bad 
performances) in the client settings (Edit - Settings - Render view - 
Server), othervise Paraview crashes after loading a big input or performing 
some operation such us changing outline to wireframe...

The error always is (similar to):

ParaView3/Servers/Common/vtkServerConnection.cxx, line 67
vtkServerConnection (0x3182220): Server Connection Closed!

Executing with: 0
*** Process received signal ***
Signal: Segmentation fault (11)
Signal code:  (128)
Failing at address: (nil)
[ 0] /lib/libpthread.so.0 [0x7f4fc6536a80]
[ 1] /usr/lib/libGL.so.1(glBlendFuncSeparateEXT+0x16) [0x7f4fc7bc12e6]
*** End of error message ***
Segmentation fault


This error also occurs if we start client and server logging directly (without 
any ssh connection) on the master node; on master node X is running and we can 
execute the test:

mpirun -np 4 /usr/X11R6/bin/glxgears

So, it doen't seem a problem regarding X connection and permission...

Moreover, executing the test:

/ParaView/ParaView-bin$ ctest -I ,,10

we obtain some segmentation fault, but the log file can't give any useful 
information.

111/475 Testing TestGradientBackground***Exception: SegFault
121/475 Testing TestOSConeCxx ***Exception: SegFault
131/475 Testing TestTranslucentLUTDepthPeeling***Exception: SegFault
141/475 Testing BoxWidget ***Exception: SegFault
151/475 Testing TestParallelopipedWidget  ***Exception: SegFault

..

On our local machine with gpu 100% test passed, and we haven't any problem to 
connect client and server on that machine.


MPI version is: mpirun (Open MPI) 1.2.7rc2
OSMesa version is: 7.0.3-7


We searched on google, on Paraview wiki... without any succes: can you help us 
please?

If you need more information let us now

Thank you very much

Luis








     Kenneth Moreland
***  Sandia National Laboratories
***
*** *** ***  email: kmo...@sandia.gov
**  ***  **  phone: (505) 844-8919
***  web:   http://www.cs.unm.edu/~kmorel

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Re: [Paraview] PV 3.4.0

2009-10-20 Thread Berk Geveci
If you do have the nvidia drivers, you should be good to go. Let us
know if it doesn't work.

On Tue, Oct 20, 2009 at 11:34 AM, Paul Edwards paul.m.edwa...@gmail.com wrote:
 Try running nvidia-settings.  This is the configuration program the
 comes with the nvidia drivers.  If you have superuser access to your
 system you can download the latest version of the nvidia drivers from
 here:

    http://www.nvidia.com/object/unix.html

 Regards,
 Paul


 2009/10/20 Stephen Wornom stephen.wor...@sophia.inria.fr:
 Paul Edwards wrote:

 Are you running linux?  And, if so, have you installed the nvidia
 graphics drivers?


 Thanks Paul,
 yes to linux, but how do I tell what drivers are installed?
 Stephen

 Regards,
 Paul


 Nvidia Quadro FX 3500 card

 Is this a good graphics card?
 Stephen

 --
 stephen.wor...@sophia.inria.fr
 2004 route des lucioles - BP93
 Sophia Antipolis
 06902 CEDEX

 Tel: 04 92 38 50 54
 Fax: 04 97 15 53 51


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 Sophia Antipolis
 06902 CEDEX

 Tel: 04 92 38 50 54
 Fax: 04 97 15 53 51


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Re: [Paraview] pvbatch vs python shell (3.6.1): pvbatch crashes

2009-10-20 Thread Jonathan Dursi

Hi, Greg:

Thanks for the quick reply.  Making things more consistent has certainly 
cleaned up the script, which now reads


from paraview.simple import *

reader = 
XMLPartitionedRectilinearGridReader(FileName=draping.0030.bin.pvtr)

pointData = CellDatatoPointData(reader)
contour = Contour(pointData)
contour.ContourBy='density'
contour.Isosurfaces=[100]
rep = Show(contour)
view = Render()
WriteImage(./foo.png)

but the problem remains; it works fine with pvserver when feeding this 
script into the client's python shell, but it still crashes horribly 
with pvbatch:


$ mpirun -np 80 pvbatch --use-offscreen-rendering ../foo.py
Process id: 0  ERROR: In 
/scinet/gpc/src/ParaView/ParaView3/Servers/ServerManager/vtkSMProxyManager.cxx, 
line 327
vtkSMProxyManager (0x1712f210): No proxy that matches: group=views and 
proxy=BarChartView were found.


Process id: 0  ERROR: In 
/scinet/gpc/src/ParaView/ParaView3/Servers/ServerManager/vtkSMProxy.cxx, 
line 2032
vtkSMComparativeViewProxy (0x183bf900): Failed to create subproxy: 
BarChartView


Process id: 0  ERROR: In 
/scinet/gpc/src/ParaView/ParaView3/Servers/ServerManager/vtkSMProxyManager.cxx, 
line 327
vtkSMProxyManager (0x1712f210): No proxy that matches: group=views and 
proxy=XYPlotView were found.


Process id: 0  ERROR: In 
/scinet/gpc/src/ParaView/ParaView3/Servers/ServerManager/vtkSMProxy.cxx, 
line 2032
vtkSMComparativeViewProxy (0x18542ea0): Failed to create subproxy: 
XYPlotView


vtkFileSeriesReader : [ ...]
vtkFileSeriesReader(1) : [ ...]
vtkFileSeriesReader(4) : [ ...]
vtkFileSeriesReader(9) : [ ...]
vtkFileSeriesReader(32) : [ ...]
vtkFileSeriesReader(35) : [ ...]
vtkPVGeometryFilter : [ ...]
vtkPVGeometryFilter(6) : [ ...]
vtkPVGeometryFilter(43) : [ ...]
vtkPVGeometryFilter(53) : [ ...]
vtkPVGeometryFilter(15) : [ ...]
rank 54 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 54: killed by signal 11
rank 51 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 51: killed by signal 11
rank 50 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 50: killed by signal 11
rank 45 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 45: killed by signal 11
rank 42 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 42: killed by signal 11
rank 69 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 69: killed by signal 11
rank 67 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 67: killed by signal 11
rank 62 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 62: killed by signal 11
rank 61 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 61: killed by signal 11
rank 58 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 58: killed by signal 11
rank 56 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 56: killed by signal 11
rank 11 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 11: killed by signal 11
rank 9 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 9: killed by signal 9
rank 8 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 8: killed by signal 9
rank 0 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 0: killed by signal 9


--
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Re: [Paraview] pvbatch vs python shell (3.6.1): pvbatch crashes

2009-10-20 Thread Berk Geveci
This sounds like a bug. Do you have a small dataset with which we can
reproduce it?

-berk

On Tue, Oct 20, 2009 at 3:34 PM, Jonathan Dursi
ljdu...@scinet.utoronto.ca wrote:
 Hi, Greg:

 Thanks for the quick reply.  Making things more consistent has certainly
 cleaned up the script, which now reads

 from paraview.simple import *

 reader =
 XMLPartitionedRectilinearGridReader(FileName=draping.0030.bin.pvtr)
 pointData = CellDatatoPointData(reader)
 contour = Contour(pointData)
 contour.ContourBy='density'
 contour.Isosurfaces=[100]
 rep = Show(contour)
 view = Render()
 WriteImage(./foo.png)

 but the problem remains; it works fine with pvserver when feeding this
 script into the client's python shell, but it still crashes horribly with
 pvbatch:

 $ mpirun -np 80 pvbatch --use-offscreen-rendering ../foo.py
 Process id: 0  ERROR: In
 /scinet/gpc/src/ParaView/ParaView3/Servers/ServerManager/vtkSMProxyManager.cxx,
 line 327
 vtkSMProxyManager (0x1712f210): No proxy that matches: group=views and
 proxy=BarChartView were found.

 Process id: 0  ERROR: In
 /scinet/gpc/src/ParaView/ParaView3/Servers/ServerManager/vtkSMProxy.cxx,
 line 2032
 vtkSMComparativeViewProxy (0x183bf900): Failed to create subproxy:
 BarChartView

 Process id: 0  ERROR: In
 /scinet/gpc/src/ParaView/ParaView3/Servers/ServerManager/vtkSMProxyManager.cxx,
 line 327
 vtkSMProxyManager (0x1712f210): No proxy that matches: group=views and
 proxy=XYPlotView were found.

 Process id: 0  ERROR: In
 /scinet/gpc/src/ParaView/ParaView3/Servers/ServerManager/vtkSMProxy.cxx,
 line 2032
 vtkSMComparativeViewProxy (0x18542ea0): Failed to create subproxy:
 XYPlotView

 vtkFileSeriesReader : [ ...]
 vtkFileSeriesReader(1) : [ ...]
 vtkFileSeriesReader(4) : [ ...]
 vtkFileSeriesReader(9) : [ ...]
 vtkFileSeriesReader(32) : [ ...]
 vtkFileSeriesReader(35) : [ ...]
 vtkPVGeometryFilter : [ ...]
 vtkPVGeometryFilter(6) : [ ...]
 vtkPVGeometryFilter(43) : [ ...]
 vtkPVGeometryFilter(53) : [ ...]
 vtkPVGeometryFilter(15) : [ ...]
 rank 54 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 54: killed by signal 11
 rank 51 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 51: killed by signal 11
 rank 50 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 50: killed by signal 11
 rank 45 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 45: killed by signal 11
 rank 42 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 42: killed by signal 11
 rank 69 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 69: killed by signal 11
 rank 67 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 67: killed by signal 11
 rank 62 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 62: killed by signal 11
 rank 61 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 61: killed by signal 11
 rank 58 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 58: killed by signal 11
 rank 56 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 56: killed by signal 11
 rank 11 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 11: killed by signal 11
 rank 9 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 9: killed by signal 9
 rank 8 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 8: killed by signal 9
 rank 0 in job 1  gpc-f144n002_47183   caused collective abort of all ranks
  exit status of rank 0: killed by signal 9


 --
 Jonathan Dursi     ljdu...@scinet.utoronto.ca
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Re: [Paraview] pvbatch vs python shell (3.6.1): pvbatch crashes

2009-10-20 Thread Jonathan Dursi

Berk Geveci wrote:

This sounds like a bug. Do you have a small dataset with which we can
reproduce it?


I'll try to generate one.

- Jonathan



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Re: [Paraview] OSX 10.6, Qt 4.5

2009-10-20 Thread Randy Heiland
Thanks Berk, I'm going down that LONG path (building from source)  
now... if you're aware of certain Qt libs that *don't* need to be  
built for PV3, I'd welcome hearing about that too, just to possibly  
speed up this process.


On Oct 20, 2009, at 2:06 PM, Berk Geveci wrote:


I am going to guess that something is screwed up with the Qt
installation. I recommend building your own (I know it is not fun). I
built pretty much every combination possible (32bit vs 64bit and Cocoa
vs Carbon). I am currently using 64bit build with Cocoa. There are
some glitches that we will have to fix but nothing that stops me from
working.

On Tue, Oct 20, 2009 at 11:22 AM, Randy Heiland  
heil...@indiana.edu wrote:
Having just updated to Snow Leopard recently, am now trying to re- 
build PV3

(from CVS).

Install Qt 4.5.3 (from qt-sdk-mac-opensource-2009.04.dmg)

running cmake (2.8.0-rc3) on PV3, I have the following problems:
...
-- Looking for Q_WS_MAC - not found.
-- Found Qt-Version 4.5.3 (using /usr/bin/qmake)
...
 Qt QTUITOOLS library not found.
 CMake Error at Applications/Client/CMakeLists.txt:498 (FILE):
 file GLOB requires a glob expression after the directory


Would welcome any insight.  Also, am curious if Snow Leopard users  
try to

build using the default 64-bit or try to force 32-bit?
And what's the story with Cocoa support in ParaView - should I be  
able to

install/use the Qt cocoa-4.6.0-beta1 OK?

thanks, Randy
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Re: [Paraview] OSX 10.6, Qt 4.5

2009-10-20 Thread Clinton Stimpson

:)
A configure -nomake examples -nomake demos will cut off some time.
The examples can be compiled on demand if you wanted.

Clint

On Tuesday 20 October 2009 02:47:34 pm Berk Geveci wrote:
 I am too scared of Qt to change its build settings :-) Some probably
 think the same about ParaView.

 On Tue, Oct 20, 2009 at 4:22 PM, Randy Heiland heil...@indiana.edu wrote:
  Thanks Berk, I'm going down that LONG path (building from source) now...
  if you're aware of certain Qt libs that *don't* need to be built for PV3,
  I'd welcome hearing about that too, just to possibly speed up this
  process.
 
  On Oct 20, 2009, at 2:06 PM, Berk Geveci wrote:
  I am going to guess that something is screwed up with the Qt
  installation. I recommend building your own (I know it is not fun). I
  built pretty much every combination possible (32bit vs 64bit and Cocoa
  vs Carbon). I am currently using 64bit build with Cocoa. There are
  some glitches that we will have to fix but nothing that stops me from
  working.
 
  On Tue, Oct 20, 2009 at 11:22 AM, Randy Heiland heil...@indiana.edu
 
  wrote:
  Having just updated to Snow Leopard recently, am now trying to re-build
  PV3
  (from CVS).
 
  Install Qt 4.5.3 (from qt-sdk-mac-opensource-2009.04.dmg)
 
  running cmake (2.8.0-rc3) on PV3, I have the following problems:
  ...
  -- Looking for Q_WS_MAC - not found.
  -- Found Qt-Version 4.5.3 (using /usr/bin/qmake)
  ...
   Qt QTUITOOLS library not found.
   CMake Error at Applications/Client/CMakeLists.txt:498 (FILE):
   file GLOB requires a glob expression after the directory
 
 
  Would welcome any insight.  Also, am curious if Snow Leopard users try
  to build using the default 64-bit or try to force 32-bit?
  And what's the story with Cocoa support in ParaView - should I be able
  to install/use the Qt cocoa-4.6.0-beta1 OK?
 
  thanks, Randy
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  http://paraview.org/Wiki/ParaView
 
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 http://www.paraview.org/mailman/listinfo/paraview

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