Re: [Paraview] Does anyone know of a paraview version where Clip Closed Surface actually worked?

2013-01-02 Thread Sebastien Jourdain
I've reported a bug here: http://www.paraview.org/Bug/view.php?id=13764


On Mon, Dec 31, 2012 at 12:02 PM, Robert Akers rob.ak...@gmail.com wrote:

 In my previous version of paraview (3.10?) Clip Closed Surface sort of
 worked, however it was hit and miss as to whether you'd get a nice closure
 of the clipped surface.  i.e. moving the clipping plane slightly would lead
 to unpredictable holes in the closure surface.

 So I have downloaded the latest version to see if things have improved.
  Clip Closed Surface now causes paraview to crash.  It does so on very
 simple geometries (e.g. try making a sphere form source then apply clip
 closed surface.).

 If someone does know of a version where this filter worked, I'd be very
 grateful

 Bob.

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Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2

2013-01-02 Thread Utkarsh Ayachit
You may want to turn off FFMPEG for starters (by turning of
PARAVIEW_ENABLE_FFMPEG cmake variable).

Utkarsh

On Tue, Jan 1, 2013 at 8:14 PM, Pei-Ying Hsieh phsieh2...@yahoo.com wrote:
 Dear ParaView experts,

 I just got the latest Paraview source code from git and tried to compile on
 OpenSUSE 12.2 64 bit OS.  But, got the following errors:

 [ 94%] Built target pqApplicationComponents
 Linking CXX executable ../../../../bin/pqPipelineApp
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_small_strptime@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_dict_count@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_timecode_check_frame_rate@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_fill_arrays@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `avpriv_float_dsp_init@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_get_buffer_size@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_copy_to_buffer@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_gettime@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_opt_set_bin@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_usleep@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_timecode_adjust_ntsc_framenum2@LIBAVUTIL_51'
 collect2: error: ld returned 1 exit status
 make[2]: *** [bin/pqPipelineApp] Error 1
 make[1]: *** [Qt/Components/Testing/Cxx/CMakeFiles/pqPipelineApp.dir/all]
 Error 2
 make: *** [all] Error 2
 --

 I do have libavuitl installed.  I am wondering how I can fix these errors.

 Thanks!

 Pei-Ying

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Re: [Paraview] How to change the Representation within a Plugin ?

2013-01-02 Thread Utkarsh Ayachit
Try calling the following before  src-updatePipeline() before
attempting to create the representation. The reader hasn't been
executed yet and hence it doesn't provide any information about what
type of data it will produce and hence createDataRepresentation()
cannot create any data-representation for it. updatePipeline() forces
the reader to execute i.e. it's RequestData() will get called and then
the rest should work as expected.

Utkarsh

On Tue, Jan 1, 2013 at 5:50 AM, Christian Richter
christian.rich...@ovgu.de wrote:
 Hi,

 I've written a Plugin to use Paraview as LiveView for our simulation Data.
 With a QFileSystemWatcher the Plugin updates the filenames of the
 fileseries-reader everytime a new result-file was written to disk.

 Now I want to change the Representation from Point to Point Sprite
 automaticly after the source is created and set some standard properties.
 In Pythion I used:
 xreader=liggghts_Reader(guiName=liggghts_dump)
 xreader.FileNames=files
 SetDisplayProperties(xreader, Representation=Point Sprite)
 DataRepresentation1 = Show()
 DataRepresentation1.PointSpriteDefaultsInitialized = 1
 DataRepresentation1.Texture = []
 DataRepresentation1.RadiusTransferFunctionEnabled = 1
 DataRepresentation1.RadiusMode = 'Scalar'
 DataRepresentation1.Representation = 'Point Sprite'
 DataRepresentation1.RadiusArray = [None, 'radius']
 DataRepresentation1.RadiusIsProportional = 1

 And I tried this in my C++Plugin:
 src = builder-createReader(QString(sources),type, files, s); //works
 src-rename(type);

 pqActiveView myActiveView=pqActiveView::instance();
 this-RenderView=myActiveView.current();
 pqDataRepresentation *repr =
 builder-createDataRepresentation(src-getOutputPort(0), this-RenderView);
 vtkSMPropertyHelper(repr-getProxy(),Representation).Set(Point
 Sprite); //segfault

 but get segfault at last line because repr is still NULL.
 I attached the code and here is a video where you can see the Plugin
 working.
 http://youtu.be/5CGGf-kPcEQ

 best,
 Christian


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[Paraview] Connecting glyph filter with data

2013-01-02 Thread Michael Reuter

Hi,

I have a plugin which I'm trying to get working in ParaView 3.98. 
The source code for the plugin can be found here: 
http://github.com/mantidproject/mantid/blob/6315_build_pv_398/Code/Mantid/Vates/ParaviewPlugins/ParaViewReaders/PeaksReader/vtkPeaksReader.cxx. 
https://github.com/mantidproject/mantid/blob/6315_build_pv_398/Code/Mantid/Vates/ParaviewPlugins/ParaViewReaders/PeaksReader/vtkPeaksReader.cxx 
After fixing function calls on the vtkPVGlyphFilter to get it to compile 
(lines 96 and 97), the plugin crashes at the vtkGlyphFilter::Update() 
call on vtkPoints::GetNumberOfPoints(). I checked the structuredMesh 
(it's actually a vtkUnstructuredGrid) object used in the 
vtkGlyphFilter::SetInputData() call and found that it does contain data 
points (40 for the particular file I'm looking at).
I did some digging about the vtkGlyphFilter::SetInputData() and 
found that it no longer sets up a pipeline connection. I think this 
might be the cause of the glyph filter not finding any data, but I'm 
unsure. However, I'm having trouble figuring out how to use 
vtkGlyphFilter::SetInputConnection() and the structuredMesh object. Is 
there anyway to make this work using the structuredMesh object or is the 
best thing to make another plugin to create the structuredMesh and then 
do vtkGlyphFilter::SetInputConnection(newPlugin-GetOutputPort()) and 
remove the vtkGlyphFilter::SetInputData() call?


Thanks,
M

--
Dr. Michael Reuter
Data Analaysis and Visualization Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email:reute...@ornl.gov

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Re: [Paraview] Display integration point centered data

2013-01-02 Thread Burlen Loring

Hi Eduardo,

You could visualize data on quadrature points, see 
http://www.vtk.org/Wiki/File:VTK-Quadrature-Point-Design-Doc.pdf for 
some details. There is a ctest that demonstrates the functionality, and 
those filters are found in ParaView. There may be some newer features 
that I don't know of, but this should get you started.


Burlen

On 01/02/2013 06:07 AM, Eduardo wrote:

Hi all,

I am looking for how I can display data that is centered at
integration quadrature point of elements in a mesh. Is that possible
or I can only display data that is centered at vertices and elements?

Can someone give some pointers on how I can do that. I couldn't find
googling the web.

Thanks in advance,
Eduardo
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Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2

2013-01-02 Thread Pei-Ying Hsieh
Hi, Utkarsh,

Thanks for the reply!

make was successful when I turned off ffmpeg.  But, I got segmention fault when 
I ran paraview.

ERROR: In 
/home/phsieh/projects/ParaView/ParaView/VTK/GUISupport/Qt/vtkEventQtSlotConnect.cxx,
 line 68
vtkEventQtSlotConnect (0x1c82420): Cannot connect NULL objects.


Segmentation fault
---

Any suggestion?

Pei-Ying





 From: Utkarsh Ayachit utkarsh.ayac...@kitware.com
To: Pei-Ying Hsieh phsieh2...@yahoo.com 
Cc: paraview paraview@paraview.org 
Sent: Wednesday, January 2, 2013 8:55 AM
Subject: Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2
 
You may want to turn off FFMPEG for starters (by turning of
PARAVIEW_ENABLE_FFMPEG cmake variable).

Utkarsh

On Tue, Jan 1, 2013 at 8:14 PM, Pei-Ying Hsieh phsieh2...@yahoo.com wrote:
 Dear ParaView experts,

 I just got the latest Paraview source code from git and tried to compile on
 OpenSUSE 12.2 64 bit OS.  But, got the following errors:

 [ 94%] Built target pqApplicationComponents
 Linking CXX executable ../../../../bin/pqPipelineApp
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_small_strptime@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_dict_count@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_timecode_check_frame_rate@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_fill_arrays@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `avpriv_float_dsp_init@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_get_buffer_size@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_copy_to_buffer@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_gettime@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_opt_set_bin@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_usleep@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_timecode_adjust_ntsc_framenum2@LIBAVUTIL_51'
 collect2: error: ld returned 1 exit status
 make[2]: *** [bin/pqPipelineApp] Error 1
 make[1]: *** [Qt/Components/Testing/Cxx/CMakeFiles/pqPipelineApp.dir/all]
 Error 2
 make: *** [all] Error 2
 --

 I do have libavuitl installed.  I am wondering how I can fix these errors.

 Thanks!

 Pei-Ying

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Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2

2013-01-02 Thread Utkarsh Ayachit
Is this a debug build? If so, can you attach a debugger and post the
stack trace?

Utkarsh

On Wed, Jan 2, 2013 at 1:36 PM, Pei-Ying Hsieh phsieh2...@yahoo.com wrote:
 Hi, Utkarsh,

 Thanks for the reply!

 make was successful when I turned off ffmpeg.  But, I got segmention fault
 when I ran paraview.

 ERROR: In
 /home/phsieh/projects/ParaView/ParaView/VTK/GUISupport/Qt/vtkEventQtSlotConnect.cxx,
 line 68
 vtkEventQtSlotConnect (0x1c82420): Cannot connect NULL objects.


 Segmentation fault
 ---

 Any suggestion?

 Pei-Ying


 
 From: Utkarsh Ayachit utkarsh.ayac...@kitware.com
 To: Pei-Ying Hsieh phsieh2...@yahoo.com
 Cc: paraview paraview@paraview.org
 Sent: Wednesday, January 2, 2013 8:55 AM
 Subject: Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2

 You may want to turn off FFMPEG for starters (by turning of
 PARAVIEW_ENABLE_FFMPEG cmake variable).

 Utkarsh

 On Tue, Jan 1, 2013 at 8:14 PM, Pei-Ying Hsieh phsieh2...@yahoo.com wrote:
 Dear ParaView experts,

 I just got the latest Paraview source code from git and tried to compile
 on
 OpenSUSE 12.2 64 bit OS.  But, got the following errors:

 [ 94%] Built target pqApplicationComponents
 Linking CXX executable ../../../../bin/pqPipelineApp
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_small_strptime@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_dict_count@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_timecode_check_frame_rate@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_fill_arrays@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `avpriv_float_dsp_init@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_get_buffer_size@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_copy_to_buffer@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_gettime@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_opt_set_bin@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_usleep@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_timecode_adjust_ntsc_framenum2@LIBAVUTIL_51'
 collect2: error: ld returned 1 exit status
 make[2]: *** [bin/pqPipelineApp] Error 1
 make[1]: *** [Qt/Components/Testing/Cxx/CMakeFiles/pqPipelineApp.dir/all]
 Error 2
 make: *** [all] Error 2
 --

 I do have libavuitl installed.  I am wondering how I can fix these errors.

 Thanks!

 Pei-Ying

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Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2

2013-01-02 Thread Pei-Ying Hsieh
Hi, Utkarsh,

No, this is a release build.  I do not know how to attach the debugger and the 
stack trace.

Pei-Ying





 From: Utkarsh Ayachit utkarsh.ayac...@kitware.com
To: Pei-Ying Hsieh phsieh2...@yahoo.com 
Cc: paraview paraview@paraview.org 
Sent: Wednesday, January 2, 2013 1:37 PM
Subject: Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2
 
Is this a debug build? If so, can you attach a debugger and post the
stack trace?

Utkarsh

On Wed, Jan 2, 2013 at 1:36 PM, Pei-Ying Hsieh phsieh2...@yahoo.com wrote:
 Hi, Utkarsh,

 Thanks for the reply!

 make was successful when I turned off ffmpeg.  But, I got segmention fault
 when I ran paraview.

 ERROR: In
 /home/phsieh/projects/ParaView/ParaView/VTK/GUISupport/Qt/vtkEventQtSlotConnect.cxx,
 line 68
 vtkEventQtSlotConnect (0x1c82420): Cannot connect NULL objects.


 Segmentation fault
 ---

 Any suggestion?

 Pei-Ying


 
 From: Utkarsh Ayachit utkarsh.ayac...@kitware.com
 To: Pei-Ying Hsieh phsieh2...@yahoo.com
 Cc: paraview paraview@paraview.org
 Sent: Wednesday, January 2, 2013 8:55 AM
 Subject: Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2

 You may want to turn off FFMPEG for starters (by turning of
 PARAVIEW_ENABLE_FFMPEG cmake variable).

 Utkarsh

 On Tue, Jan 1, 2013 at 8:14 PM, Pei-Ying Hsieh phsieh2...@yahoo.com wrote:
 Dear ParaView experts,

 I just got the latest Paraview source code from git and tried to compile
 on
 OpenSUSE 12.2 64 bit OS.  But, got the following errors:

 [ 94%] Built target pqApplicationComponents
 Linking CXX executable ../../../../bin/pqPipelineApp
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_small_strptime@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_dict_count@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_timecode_check_frame_rate@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_fill_arrays@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `avpriv_float_dsp_init@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_get_buffer_size@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_copy_to_buffer@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_gettime@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_opt_set_bin@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_usleep@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_timecode_adjust_ntsc_framenum2@LIBAVUTIL_51'
 collect2: error: ld returned 1 exit status
 make[2]: *** [bin/pqPipelineApp] Error 1
 make[1]: *** [Qt/Components/Testing/Cxx/CMakeFiles/pqPipelineApp.dir/all]
 Error 2
 make: *** [all] Error 2
 --

 I do have libavuitl installed.  I am wondering how I can fix these errors.

 Thanks!

 Pei-Ying

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Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2

2013-01-02 Thread Utkarsh Ayachit
Do you know what version of Qt you built ParaView with?

On Wed, Jan 2, 2013 at 2:20 PM, Pei-Ying Hsieh phsieh2...@yahoo.com wrote:
 Hi, Utkarsh,

 No, this is a release build.  I do not know how to attach the debugger and
 the stack trace.

 Pei-Ying


 
 From: Utkarsh Ayachit utkarsh.ayac...@kitware.com
 To: Pei-Ying Hsieh phsieh2...@yahoo.com
 Cc: paraview paraview@paraview.org
 Sent: Wednesday, January 2, 2013 1:37 PM

 Subject: Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2

 Is this a debug build? If so, can you attach a debugger and post the
 stack trace?

 Utkarsh

 On Wed, Jan 2, 2013 at 1:36 PM, Pei-Ying Hsieh phsieh2...@yahoo.com wrote:
 Hi, Utkarsh,

 Thanks for the reply!

 make was successful when I turned off ffmpeg.  But, I got segmention fault
 when I ran paraview.

 ERROR: In

 /home/phsieh/projects/ParaView/ParaView/VTK/GUISupport/Qt/vtkEventQtSlotConnect.cxx,
 line 68
 vtkEventQtSlotConnect (0x1c82420): Cannot connect NULL objects.


 Segmentation fault
 ---

 Any suggestion?

 Pei-Ying


 
 From: Utkarsh Ayachit utkarsh.ayac...@kitware.com
 To: Pei-Ying Hsieh phsieh2...@yahoo.com
 Cc: paraview paraview@paraview.org
 Sent: Wednesday, January 2, 2013 8:55 AM
 Subject: Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2

 You may want to turn off FFMPEG for starters (by turning of
 PARAVIEW_ENABLE_FFMPEG cmake variable).

 Utkarsh

 On Tue, Jan 1, 2013 at 8:14 PM, Pei-Ying Hsieh phsieh2...@yahoo.com
 wrote:
 Dear ParaView experts,

 I just got the latest Paraview source code from git and tried to compile
 on
 OpenSUSE 12.2 64 bit OS.  But, got the following errors:

 [ 94%] Built target pqApplicationComponents
 Linking CXX executable ../../../../bin/pqPipelineApp
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_small_strptime@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_dict_count@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_timecode_check_frame_rate@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_fill_arrays@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `avpriv_float_dsp_init@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_get_buffer_size@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_copy_to_buffer@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_gettime@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_opt_set_bin@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_usleep@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_timecode_adjust_ntsc_framenum2@LIBAVUTIL_51'
 collect2: error: ld returned 1 exit status
 make[2]: *** [bin/pqPipelineApp] Error 1
 make[1]: *** [Qt/Components/Testing/Cxx/CMakeFiles/pqPipelineApp.dir/all]
 Error 2
 make: *** [all] Error 2
 --

 I do have libavuitl installed.  I am wondering how I can fix these
 errors.

 Thanks!

 Pei-Ying

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Re: [Paraview] How to change the Representation within a Plugin ?

2013-01-02 Thread Christian Richter

Thank you Utkarsh,
thas does the trick.

Can you give me a hint how I can do
DataRepresentation1.RadiusArray = [None, 'radius'] //python trace
in C++ ?
Thanks,
Christian

Zitat von Utkarsh Ayachit utkarsh.ayac...@kitware.com:


Try calling the following before  src-updatePipeline() before
attempting to create the representation. The reader hasn't been
executed yet and hence it doesn't provide any information about what
type of data it will produce and hence createDataRepresentation()
cannot create any data-representation for it. updatePipeline() forces
the reader to execute i.e. it's RequestData() will get called and then
the rest should work as expected.

Utkarsh

On Tue, Jan 1, 2013 at 5:50 AM, Christian Richter
christian.rich...@ovgu.de wrote:

Hi,

I've written a Plugin to use Paraview as LiveView for our simulation Data.
With a QFileSystemWatcher the Plugin updates the filenames of the
fileseries-reader everytime a new result-file was written to disk.

Now I want to change the Representation from Point to Point Sprite
automaticly after the source is created and set some standard properties.
In Pythion I used:
xreader=liggghts_Reader(guiName=liggghts_dump)
xreader.FileNames=files
SetDisplayProperties(xreader, Representation=Point Sprite)
DataRepresentation1 = Show()
DataRepresentation1.PointSpriteDefaultsInitialized = 1
DataRepresentation1.Texture = []
DataRepresentation1.RadiusTransferFunctionEnabled = 1
DataRepresentation1.RadiusMode = 'Scalar'
DataRepresentation1.Representation = 'Point Sprite'
DataRepresentation1.RadiusArray = [None, 'radius']
DataRepresentation1.RadiusIsProportional = 1

And I tried this in my C++Plugin:
src = builder-createReader(QString(sources),type, files, s); //works
src-rename(type);

pqActiveView myActiveView=pqActiveView::instance();
this-RenderView=myActiveView.current();
pqDataRepresentation *repr =
builder-createDataRepresentation(src-getOutputPort(0), this-RenderView);
vtkSMPropertyHelper(repr-getProxy(),Representation).Set(Point
Sprite); //segfault

but get segfault at last line because repr is still NULL.
I attached the code and here is a video where you can see the Plugin
working.
http://youtu.be/5CGGf-kPcEQ

best,
Christian


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Re: [Paraview] Connecting glyph filter with data

2013-01-02 Thread Utkarsh Ayachit
Michael,

In vtkPeaksReader::RequestData, instead of
glyphFilter-SetSourceData(sphere-GetOutput()), do

EITHER
   glyphFilter-SetSourceConnection(sphere-GetOutputPort())
OR
  sphere-Update()
  glyphFilter-SetSourceData(sphere-GetOutput())

Unlike the old SetInput()/SetSource() methods,
SetInputData()/SetSourceData() don't set the pipeline connections
between the produces and consumers. So when you called
SetSourceData(sphere-GetOutput()), the current state of the output of
vtkSphereSource was passed on to the glyph filter. Since the
SphereSource hadn't executed yet, it was empty. So we can fix the
problem by either setting up a true pipeline connection (using
SetSourceConnection) or by ensuring that the SphereSource has produced
valid data by calling sphere-Update()

Utkarsh


On Wed, Jan 2, 2013 at 10:50 AM, Michael Reuter reute...@ornl.gov wrote:
 Hi,

 I have a plugin which I'm trying to get working in ParaView 3.98. The
 source code for the plugin can be found here:
 http://github.com/mantidproject/mantid/blob/6315_build_pv_398/Code/Mantid/Vates/ParaviewPlugins/ParaViewReaders/PeaksReader/vtkPeaksReader.cxx.
 After fixing function calls on the vtkPVGlyphFilter to get it to compile
 (lines 96 and 97), the plugin crashes at the vtkGlyphFilter::Update() call
 on vtkPoints::GetNumberOfPoints(). I checked the structuredMesh (it's
 actually a vtkUnstructuredGrid) object used in the
 vtkGlyphFilter::SetInputData() call and found that it does contain data
 points (40 for the particular file I'm looking at).
 I did some digging about the vtkGlyphFilter::SetInputData() and found
 that it no longer sets up a pipeline connection. I think this might be the
 cause of the glyph filter not finding any data, but I'm unsure. However, I'm
 having trouble figuring out how to use vtkGlyphFilter::SetInputConnection()
 and the structuredMesh object. Is there anyway to make this work using the
 structuredMesh object or is the best thing to make another plugin to create
 the structuredMesh and then do
 vtkGlyphFilter::SetInputConnection(newPlugin-GetOutputPort()) and remove
 the vtkGlyphFilter::SetInputData() call?

 Thanks,
 M

 --
 Dr. Michael Reuter
 Data Analaysis and Visualization Group
 Neutron Data Analysis and Visualization Division
 Oak Ridge National Laboratory

 Office: 1-865-241-7216
 Fax: 1-865-574-6080
 Email: reute...@ornl.gov


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[Paraview] Question about Paraview and parallel processing

2013-01-02 Thread Adam Larios

To whom it may concern,

I have some data which takes on different values in space, which 
normally would be easy to view in Paraview.  The problem is that the 
space (which is a big cube) is decomposed into different subdomains 
since the data was processed in parallel, and each subdomain is saved in 
a different file.  Currently, paraview interprets each subdomain as a 
different time-step.  Is it possible to get paraview to load all of the 
parallelized data and view it as a single time step?


Of course, I could parse all of these files into one big file, but I 
would like to avoid this extra step if necessary, since the files are 
updated regularly, and an extra post-processing step would slow things 
down significantly.


My files are in legacy VTK format.  They look like this, for example 
(the real runs are much larger than this):


# myData_00.vtk #
vtk myData
ASCII
DATASET STRUCTURED_GRID
DIMENSIONS  12   12   12
POINTS1728 float
0.9519978E-01  0.9519978E-01  0.9519978E-01
0.2855993E+00  0.9519978E-01  0.9519978E-01
0.4759989E+00  0.9519978E-01  0.9519978E-01
..

# myData_01.vtk #
vtk myData
ASCII
DATASET STRUCTURED_GRID
DIMENSIONS  12   12   12
POINTS1728 float
0.9519978E-01  0.9519978E-01  0.2189595E+01
0.2855993E+00  0.9519978E-01  0.2189595E+01
0.4759989E+00  0.9519978E-01  0.2189595E+01
..

and so on up to myData_07.vtk.  Visit can stitch all of these domains 
together with a simple file that tells what all the other files are:


# myData.visit #
!NBLOCKS  8
myData_00.vtk
myData_01.vtk
myData_02.vtk
myData_03.vtk
myData_04.vtk
myData_05.vtk
myData_06.vtk
myData_07.vtk

Is there anything I can do to get Paraview to interpret these as a 
single data set?  Any help would be much appreciated!  (Also, my 
apologies in advance if this is not the right place to post this kind of 
thing.)


Best regards,
Adam
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Re: [Paraview] Connecting glyph filter with data

2013-01-02 Thread Reuter, Michael A.
Hi Utkarsh,

I love one line changes. Works like a charm.

Thanks,
M


On 1/2/13 3:09 PM, Utkarsh Ayachit utkarsh.ayac...@kitware.com wrote:

Michael,

In vtkPeaksReader::RequestData, instead of
glyphFilter-SetSourceData(sphere-GetOutput()), do

EITHER
   glyphFilter-SetSourceConnection(sphere-GetOutputPort())
OR
  sphere-Update()
  glyphFilter-SetSourceData(sphere-GetOutput())

Unlike the old SetInput()/SetSource() methods,
SetInputData()/SetSourceData() don't set the pipeline connections
between the produces and consumers. So when you called
SetSourceData(sphere-GetOutput()), the current state of the output of
vtkSphereSource was passed on to the glyph filter. Since the
SphereSource hadn't executed yet, it was empty. So we can fix the
problem by either setting up a true pipeline connection (using
SetSourceConnection) or by ensuring that the SphereSource has produced
valid data by calling sphere-Update()

Utkarsh


On Wed, Jan 2, 2013 at 10:50 AM, Michael Reuter reute...@ornl.gov wrote:
 Hi,

 I have a plugin which I'm trying to get working in ParaView 3.98.
The
 source code for the plugin can be found here:
 
http://github.com/mantidproject/mantid/blob/6315_build_pv_398/Code/Mantid
/Vates/ParaviewPlugins/ParaViewReaders/PeaksReader/vtkPeaksReader.cxx.
 After fixing function calls on the vtkPVGlyphFilter to get it to compile
 (lines 96 and 97), the plugin crashes at the vtkGlyphFilter::Update()
call
 on vtkPoints::GetNumberOfPoints(). I checked the structuredMesh (it's
 actually a vtkUnstructuredGrid) object used in the
 vtkGlyphFilter::SetInputData() call and found that it does contain data
 points (40 for the particular file I'm looking at).
 I did some digging about the vtkGlyphFilter::SetInputData() and
found
 that it no longer sets up a pipeline connection. I think this might be
the
 cause of the glyph filter not finding any data, but I'm unsure.
However, I'm
 having trouble figuring out how to use
vtkGlyphFilter::SetInputConnection()
 and the structuredMesh object. Is there anyway to make this work using
the
 structuredMesh object or is the best thing to make another plugin to
create
 the structuredMesh and then do
 vtkGlyphFilter::SetInputConnection(newPlugin-GetOutputPort()) and
remove
 the vtkGlyphFilter::SetInputData() call?

 Thanks,
 M

 --
 Dr. Michael Reuter
 Data Analaysis and Visualization Group
 Neutron Data Analysis and Visualization Division
 Oak Ridge National Laboratory

 Office: 1-865-241-7216
 Fax: 1-865-574-6080
 Email: reute...@ornl.gov


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Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2

2013-01-02 Thread Pei-Ying Hsieh
Hi, Utkarsh,

I am using Qt-4.8.1 on OpenSUSE 12.2 64 bit.

Pei-Ying



 From: Utkarsh Ayachit utkarsh.ayac...@kitware.com
To: Pei-Ying Hsieh phsieh2...@yahoo.com 
Cc: paraview paraview@paraview.org 
Sent: Wednesday, January 2, 2013 2:35 PM
Subject: Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2
 
Do you know what version of Qt you built ParaView with?

On Wed, Jan 2, 2013 at 2:20 PM, Pei-Ying Hsieh phsieh2...@yahoo.com wrote:
 Hi, Utkarsh,

 No, this is a release build.  I do not know how to attach the debugger and
 the stack trace.

 Pei-Ying


 
 From: Utkarsh Ayachit utkarsh.ayac...@kitware.com
 To: Pei-Ying Hsieh phsieh2...@yahoo.com
 Cc: paraview paraview@paraview.org
 Sent: Wednesday, January 2, 2013 1:37 PM

 Subject: Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2

 Is this a debug build? If so, can you attach a debugger and post the
 stack trace?

 Utkarsh

 On Wed, Jan 2, 2013 at 1:36 PM, Pei-Ying Hsieh phsieh2...@yahoo.com wrote:
 Hi, Utkarsh,

 Thanks for the reply!

 make was successful when I turned off ffmpeg.  But, I got segmention fault
 when I ran paraview.

 ERROR: In

 /home/phsieh/projects/ParaView/ParaView/VTK/GUISupport/Qt/vtkEventQtSlotConnect.cxx,
 line 68
 vtkEventQtSlotConnect (0x1c82420): Cannot connect NULL objects.


 Segmentation fault
 ---

 Any suggestion?

 Pei-Ying


 
 From: Utkarsh Ayachit utkarsh.ayac...@kitware.com
 To: Pei-Ying Hsieh phsieh2...@yahoo.com
 Cc: paraview paraview@paraview.org
 Sent: Wednesday, January 2, 2013 8:55 AM
 Subject: Re: [Paraview] ParaView from git, make fail on OpenSUSE 12.2

 You may want to turn off FFMPEG for starters (by turning of
 PARAVIEW_ENABLE_FFMPEG cmake variable).

 Utkarsh

 On Tue, Jan 1, 2013 at 8:14 PM, Pei-Ying Hsieh phsieh2...@yahoo.com
 wrote:
 Dear ParaView experts,

 I just got the latest Paraview source code from git and tried to compile
 on
 OpenSUSE 12.2 64 bit OS.  But, got the following errors:

 [ 94%] Built target pqApplicationComponents
 Linking CXX executable ../../../../bin/pqPipelineApp
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_small_strptime@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_dict_count@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_timecode_check_frame_rate@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_fill_arrays@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `avpriv_float_dsp_init@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_get_buffer_size@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_image_copy_to_buffer@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_gettime@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_opt_set_bin@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavformat.so:
 undefined reference to `av_usleep@LIBAVUTIL_51'
 /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../lib64/libavcodec.so:
 undefined reference to `av_timecode_adjust_ntsc_framenum2@LIBAVUTIL_51'
 collect2: error: ld returned 1 exit status
 make[2]: *** [bin/pqPipelineApp] Error 1
 make[1]: *** [Qt/Components/Testing/Cxx/CMakeFiles/pqPipelineApp.dir/all]
 Error 2
 make: *** [all] Error 2
 --

 I do have libavuitl installed.  I am wondering how I can fix these
 errors.

 Thanks!

 Pei-Ying

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