Re: [Paraview] Linker error with OpenMPI 1.6.2
Utkarsh, I've used the latest git master version. I'll send you the CmakeCache.txt with a separate mail. Best regards, Stephan -Ursprüngliche Nachricht- Von: Utkarsh Ayachit [mailto:utkarsh.ayac...@kitware.com] Gesendet: Donnerstag, 3. Januar 2013 15:52 An: Stephan Rogge Cc: ParaView Betreff: Re: [Paraview] Linker error with OpenMPI 1.6.2 What version of ParaView is this? Can you attach your CmakeCache.txt file? Utkarsh On Thu, Jan 3, 2013 at 9:46 AM, Stephan Rogge stephan.ro...@tu-cottbus.de wrote: Happy new year, Ive tried to use a newer version of OpenMPI (1.4.4 = 1.6.2) with PV from git master. Unfortunately, I was not able to build ParaView successfully. A linker error comes from the vtkParallelMPI project. When I look into the project file I can see that libmpi.lib and libmpi_cxx.lib are set correctly. vtkMPICommunicator.cxx.obj : error LNK2001: Unknown external Symbol ompi_mpi_file_null. vtkMPIController.cxx.obj : error LNK2001: Unknown external Symbol ompi_mpi_file_null. I have no idea, why this failure occurs. Compiling the same PV from git master with OpenMPI 1.4.4 still works. Thanks, Stephan ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
[Paraview] Error with Qt while installing Paraview
Hello, I am trying to install the developmental version of Paraview on Mac OS X 10.8. I was following the instructions given on this (http://paraview.org/Wiki/ParaView:Build_And_Install) page. I have also installed the latest version of Qt for Mac from this (http://qt-project.org/downloads) page. Still, when I am running the ccmake command, it gives me the following error: Make Error at CMakeLists.txt:313 (message): Qt 4.7.0 or greater not found. Please check the QT_QMAKE_EXECUTABLE variable. CMake Error at /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:97 (message): Could NOT find Qt4 (missing: QT_QMAKE_EXECUTABLE QT_MOC_EXECUTABLE QT_RCC_EXECUTABLE QT_UIC_EXECUTABLE QT_INCLUDE_DIR QT_LIBRARY_DIR QT_QTCORE_LIBRARY) (Required is at least version 4.7.0) Call Stack (most recent call first): /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:291 (_FPHSA_FAILURE_MESSAGE) /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/FindQt4.cmake:1223 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) VTK/GUISupport/Qt/CMakeLists.txt:57 (find_package) Any ideas what am I doing wrong? Thanks, Pradeep___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] Error with Qt while installing Paraview
Try setting the QT_QMAKE_EXECUTABLE variable to point to the right qmake executable installed by Qt. On Fri, Jan 4, 2013 at 5:01 AM, Pradeep Jha pradeep.kumar@gmail.com wrote: QT_QMAKE_EXECUTABLE ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] Linker error with OpenMPI 1.6.2
Looking at your cache, it is possible that MPI_C_LIBRARIES and MPI_CXX_LIBRARIES cmake variables need to include some more libraries. There's some argument to mpicc that will tell you the link link. Can you ensure that all the libraries are setup as required. I vaguely remember there are other ompi libraries that need to be included as well. Utkarsh On Fri, Jan 4, 2013 at 4:18 AM, Stephan Rogge stephan.ro...@tu-cottbus.de wrote: Utkarsh, I've used the latest git master version. I'll send you the CmakeCache.txt with a separate mail. Best regards, Stephan -Ursprüngliche Nachricht- Von: Utkarsh Ayachit [mailto:utkarsh.ayac...@kitware.com] Gesendet: Donnerstag, 3. Januar 2013 15:52 An: Stephan Rogge Cc: ParaView Betreff: Re: [Paraview] Linker error with OpenMPI 1.6.2 What version of ParaView is this? Can you attach your CmakeCache.txt file? Utkarsh On Thu, Jan 3, 2013 at 9:46 AM, Stephan Rogge stephan.ro...@tu-cottbus.de wrote: Happy new year, I’ve tried to use a newer version of OpenMPI (1.4.4 = 1.6.2) with PV from git master. Unfortunately, I was not able to build ParaView successfully. A linker error comes from the vtkParallelMPI project. When I look into the project file I can see that libmpi.lib and libmpi_cxx.lib are set correctly. vtkMPICommunicator.cxx.obj : error LNK2001: Unknown external Symbol ompi_mpi_file_null. vtkMPIController.cxx.obj : error LNK2001: Unknown external Symbol ompi_mpi_file_null. … I have no idea, why this failure occurs. Compiling the same PV from git master with OpenMPI 1.4.4 still works. Thanks, Stephan ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
[Paraview] Crash after loading a state with plots at time unequal zero
Hello, I wrote a paraview reader (paraview 3.14.1 64 bit - self compiled - on a kubuntu linux machine ) for a custom file format using two outputs with unstructured grid data as well as time dependency. As long as only 3D filters (clipping, contour, etc. ) are applied to the outputs, state files can be saved and loaded again without problems. Trouble starts, when I use 2D filters such as Histogram or Plot-Lines. The filters can be applied, which results in the typical behavior of Paraview such as splitting of the view into a 3D and a 2D region. A state file can be saved and the program works stable as long as the state is open. If I try to open a saved state file again it works if the state was saved at t=0, which is the first time value. For higher time values paraview crashes during the loading procedure with error message X Error: BadColor (invalid Colormap parameter) 12 Major opcode: 1 (X_CreateWindow) Resource id: 0x821 Some more observations: 1. While for the t=0 state files the layout is split into the 3d and the 2d region, it remains gray (without a 3D or 2D region) for state files with t0. 2. The error occurs after the RequestData of my reader and for a short moment a window with the 2D data is shown on the screen as a decoupled window. 3. I removed the Bar/line view and saved the state at t0. In that case the state can be loaded properly too. 4. There is no difference between using the first or the second output of the reader as input for the Histogram. I would be very happy if someone could give me a hint to solve this problem. Best regards Christian -- Christian Andreas IPCMS - Department of Magnetic Objets on the NanoScale (DMONS) 23, rue du Loess BP 43 F-67034 STRASBOURG CEDEX 2 FRANCE Phone : (33) 3 88 10 70 84 Fax : (33) 3 88 10 72 49 ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] Display integration point centered data
Burlen: I got the paper and it seems to be what I need. I was just wondering though if there is any example that can be opened with Paraview. As far as I can understood, there is a code example. But what I really would like to have is a file example with data at integration point (let say a scalar or vector) to be displayed. Many thanks, Eduardo On Wed, Jan 2, 2013 at 3:07 PM, Burlen Loring blor...@lbl.gov wrote: Hi Eduardo, You could visualize data on quadrature points, see http://www.vtk.org/Wiki/File:VTK-Quadrature-Point-Design-Doc.pdf for some details. There is a ctest that demonstrates the functionality, and those filters are found in ParaView. There may be some newer features that I don't know of, but this should get you started. Burlen On 01/02/2013 06:07 AM, Eduardo wrote: Hi all, I am looking for how I can display data that is centered at integration quadrature point of elements in a mesh. Is that possible or I can only display data that is centered at vertices and elements? Can someone give some pointers on how I can do that. I couldn't find googling the web. Thanks in advance, Eduardo ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
[Paraview] ParaView 3.98 NRRD reader does not support ASCII encoding
The NRRD specification (http://teem.sourceforge.net/nrrd/format.html#general.4, paragraph 4) states that all readers must support raw and ASCII encoding, but when I open a NRRD file with either ascii or ASCII encoding, ParaView reports ERROR: In C:\DBD\pvs-x64\paraview\src\paraview\VTK\IO\Image\vtkNrrdReader.cxx, line 377 vtkPNrrdReader (0CF65C70): Unsupported encoding: ascii. If I lie to it and tell it that it is raw encoding, the file loading completes (with garbage values, of course), so it does not seem to be a problem with the format of the NRRD header file I am using. Unfortunately, this is preventing me from switching from legacy VTK readers to the NRRD reader as my conversion example in by visualization class being taught this spring. I like the detatched-headers feature of NRRD, which keeps folks from having to hand-edit their giant data files, but I do need to be able to have them support the reading of ASCII files. Is implementing ASCII support on the future list? If so, any idea of the timeline? Thanks, Russ --- Russell M. Taylor II, Ph.D. tayl...@cs.unc.edu CB #3175, Sitterson Hallwww.cs.unc.edu/~taylorr University of North Carolina, Voice: (919) 962-1701 Chapel Hill, NC 27599-3175FAX: (919) 962-1799 ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
[Paraview] ParaView 3.98 contour filter Compute scalars misbehaves
After loading a data file with more than one data set in it (for example, the VTK file stored in http://www.cs.unc.edu/~taylorr/temp/Mcneil_CNTs.zip), application of the contour filter does not allow me to click the Compute Scalars checkbox (it is grayed out). If I compute a range of values (Delete All/New Range) and Contour by Result1, it does not carry Result1 into the output. Therefore, I cannot color the contours by the value I used to generate them. Workaround shows another problem: If I use the Calculator on the original data set and make a Result1copy data set from Result1 and then Contour the output of the calculator by Result1, then it carries through Result1 and Result2 but not Result1copy. I would have expected it to keep Result2 and Result1copy. If I contour by Result1copy, it still carries through Result1 and Result2. I'll add the workaround into my homework description for the class this semester, but it would be good if the checkbox was not grayed out so we could select the behavior that we usually want from this filter. It used to work in an older version. Thanks, Russ --- Russell M. Taylor II, Ph.D. tayl...@cs.unc.edu CB #3175, Sitterson Hallwww.cs.unc.edu/~taylorr University of North Carolina, Voice: (919) 962-1701 Chapel Hill, NC 27599-3175FAX: (919) 962-1799 ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] ParaView 3.98 NRRD reader does not support ASCII encoding
I hadn't any plans to implement ASCII encoding in the NRRD reader, and I don't know of anyone else making any edits to it. The problem with ASCII encoding is that there is no straightforward way to implement parallel reading of the data (because offsets cannot be determined), and one of the main practical functions of the NRRD reader is to be able to read very large raw arrays from files. I wouldn't think it would be too hard to implement ASCII encodings. It could just fail or do something stupid if run in parallel. -Ken On 1/4/13 2:15 PM, Russell M. Taylor II tayl...@cs.unc.edu wrote: The NRRD specification (http://teem.sourceforge.net/nrrd/format.html#general.4, paragraph 4) states that all readers must support raw and ASCII encoding, but when I open a NRRD file with either ascii or ASCII encoding, ParaView reports ERROR: In C:\DBD\pvs-x64\paraview\src\paraview\VTK\IO\Image\vtkNrrdReader.cxx, line 377 vtkPNrrdReader (0CF65C70): Unsupported encoding: ascii. If I lie to it and tell it that it is raw encoding, the file loading completes (with garbage values, of course), so it does not seem to be a problem with the format of the NRRD header file I am using. Unfortunately, this is preventing me from switching from legacy VTK readers to the NRRD reader as my conversion example in by visualization class being taught this spring. I like the detatched-headers feature of NRRD, which keeps folks from having to hand-edit their giant data files, but I do need to be able to have them support the reading of ASCII files. Is implementing ASCII support on the future list? If so, any idea of the timeline? Thanks, Russ --- Russell M. Taylor II, Ph.D. tayl...@cs.unc.edu CB #3175, Sitterson Hallwww.cs.unc.edu/~taylorr University of North Carolina, Voice: (919) 962-1701 Chapel Hill, NC 27599-3175FAX: (919) 962-1799 ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] Error with Qt while installing Paraview
Hello, I set the environment variable QT_QMAKE_EXECUTABLE in my .bashrc file to point to the qmake executable. In the installed Qt5.0.0 folder, I found only one qmake executable which was at /path_to_Qt5.0.0/5.0.0/clang_64_bin/. But still I am getting the same error. Any further ideas? Thank you, Pradeep 2013/1/4 Utkarsh Ayachit utkarsh.ayac...@kitware.com Try setting the QT_QMAKE_EXECUTABLE variable to point to the right qmake executable installed by Qt. On Fri, Jan 4, 2013 at 5:01 AM, Pradeep Jha pradeep.kumar@gmail.com wrote: QT_QMAKE_EXECUTABLE ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
[Paraview] Paraview is running slow
Hello, I installed Paraview on my Macbook Air with 1 processor and on a Linux Machine with 32 processors. On both the systems I installed the the binary form of Paraview (not from source code). I opened the same binary data file on both systems which is 512 MB in size, but I find that the Paraview on Linux is running far slower than the Mac. I am executing Paraview on both machines by simply calling the paraview executable from command line. I am the only user on both machines, so it is not affected by other users. The processor information of both machines are given below. Any ideas if I am doing something wrong? Thank you, Pradeep = Processor information: = -- Mac -- [pradeep@laptop ~]$sysctl -n machdep.cpu.brand_string Intel(R) Core(TM) i7-3667U CPU @ 2.00GHz [pradeep@laptop ~]$system_profiler | grep Processor Processor Name: Intel Core i7 Processor Speed: 2 GHz Number of Processors: 1 -- Linux -- processor : 31 vendor_id : GenuineIntel cpu family : 6 model : 45 model name : Intel(R) Xeon(R) CPU E5-2687W 0 @ 3.10GHz stepping : 7 cpu MHz : 1200.000 cache size : 20480 KB physical id : 1 siblings : 16 core id : 7 cpu cores : 8 apicid : 47 initial apicid : 47 fpu : yes fpu_exception : yes cpuid level : 13 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic popcnt aes xsave avx lahf_lm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid bogomips : 6184.20 clflush size : 64 cache_alignment : 64 address sizes : 46 bits physical, 48 bits virtual power management: ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
[Paraview] Paraview crashing on CentOs
Hello, I just downloaded the Paraview binary on CentOs. I have been using Paraview on Mac and another Linux machine before that for visualizing a data file. But when I am loading the same file here on CentOs, and changing the Representation to Volume, it is crashing giving me the following error: ERROR: In /home/utkarsh/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkAlgorithm.cxx, line 1387 vtkImageResample (0x18872790): Attempt to get connection index 0 for input port 0, which has 0 connections. Everything else is working smoothly like slicing, surface representation, wireframe representation etc. But the moment I turn on volume representation, it crashes. Any ideas? Thank you Pradeep ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
