date:20170320

Re: [Paraview] How to configure ParaView 5.2.0 to use off screen rendering?

2017-03-20 Thread 张驭洲

Hello,

Thanks a lot for you two! I've found my mistakes based on your tips. It is true
that I missed the khrplatform.h file. I put it in the same directory of other
EGL header files with the name of "EGL", so it can not be found by the program.
Creating a KHR dir and putting khrplatform.h into it solved my problem. Now my
paraview can work with EGL. Thank you very much!

Sincerely
-Zhang

-原始邮件-
发件人: "Alessandro De Maio"
发送时间: 2017年3月21日 星期二
收件人: "Dan Lipsa"
抄送: "张驭洲" , paraview
主题: Re: [Paraview] How to configure ParaView 5.2.0 to use off screen rendering?

Hi,
I've just compiled the Paraview-5.3.0 superbuild with EGL. I created an
EGL dir in /usr/include with egl.h, eglext.h and eglplatform.h (taken from
www.khronos.org/registry/egl/) and I created a KHR dir in /usr/include with
khrplatform.h (taken from the same site).
ccmake already recognized the /usr/include/EGL include path for EGL and
everything was ok.

Alessandro

On Mon, Mar 20, 2017 at 3:28 PM, Dan Lipsa wrote:

Looking at the errors you are getting looks like
/pan20/yzzhang/EGL/eglplatform.h

needs KHR/khrplatform.h

Maybe your configuration uses different EGL header files than what you expect.

DAn

On Mon, Mar 20, 2017 at 10:22 AM, 张驭洲 wrote:

Thanks for your reply! But I don't know where the KHR/khrplatform.h is used.
When I configure paraview using ccmake, the options about EGL are
EGL_INCLUDE_DIR,
EGL_LIBRARY, EGL_gldispatch_LIBRARY, EGL_opengl_LIBRARY, VTK_EGL_DEVICE_INDEX
and VTK_USE_OFFSCREEN_EGL. In the path that I assigned to the EGL_INCLUDE_DIR,
there is khrplatform.h file. What's more, I have built ParaView 5.2.0 with EGL
used on another machine. That machine use NVIDIA GT 730 GPU, and in the
EGL_INCLUDE_DIR path, there is not a khrplatform.h file, but the paraview can
be built successfully and works. The khrplatform.h is required by the current
EGL (1.5), but my EGL version is 1.4. Maybe it doesn't need that file?

Thank you again!

-Zhang
-原始邮件-
发件人: "Dan Lipsa"
发送时间: 2017年3月20日 星期一
收件人: "张驭洲"
抄送: paraview
主题: Re: [Paraview] How to configure ParaView 5.2.0 to use off screen rendering?

It seems you are missing KHR/khrplatform.h
You can download it from the EGL website:
https://www.khronos.org/registry/EGL/

On Sat, Mar 18, 2017 at 3:51 AM, 张驭洲 wrote:

Hello,

I'm building ParaView 5.2.0 on a machine that uses NVIDIA Tesla K80 GPUs. The
K80 GPUs have no interface for monitor, so I have to use off screen rendering.
It's said that EGL is a pretty good choice for this situation, but as I switch
VTK_USE_OFFSCREEN and VTK_USE_OFFSCREEN_EGL to "ON" and then make, I get these
errors:

Built target vtkIOImage
[ 16%] Building C object
VTK/ThirdParty/glew/vtkglew/CMakeFiles/vtkglew.dir/src/glew.c.o
In file included from /pan20/yzzhang/EGL/egl.h:39,
from
/pan20/yzzhang/ParaView-v5.2.0/VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
/pan20/yzzhang/EGL/eglplatform.h:37:29: error: KHR/khrplatform.h: No such file
or directory
In file included from /pan20/yzzhang/EGL/egl.h:39,
from
/pan20/yzzhang/ParaView-v5.2.0/VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
/pan20/yzzhang/EGL/eglplatform.h:151: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
‘__attribute__’ before ‘EGLint’
In file included from
/pan20/yzzhang/ParaView-v5.2.0/VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
/pan20/yzzhang/EGL/egl.h:121: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
‘__attribute__’ before ‘EGLBoolean’
In file included from
/pan20/yzzhang/ParaView-v5.2.0/VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
/pan20/yzzhang/EGL/egl.h:122: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
‘__attribute__’ before ‘EGLBoolean’
/pan20/yzzhang/EGL/egl.h:123: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
‘__attribute__’ before ‘EGLContext’
/pan20/yzzhang/EGL/egl.h:124: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
‘__attribute__’ before ‘EGLSurface’
/pan20/yzzhang/EGL/egl.h:125: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
‘__attribute__’ before ‘EGLSurface’
..

Maybe it is clear that there is something wrong with the EGL header file, but I
don't know how to fix it. The operation system is CentOS 6.6. There is an
integrated graphics and 6 K80 GPUs. I connect to the machine using ssh and have
set headless X server using one of the K80 GPUs. I can run the glxgears test in
the off screen mode, but I don'n know how to make sure that EGL is correctly
setted. I want to know how to use EGL for off screen rendering.

Any help would be highly appreciated!

-Zhang

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[Paraview] White (or other strange text) on Linux - Solved

2017-03-20 Thread Scott, W Alan

I wanted to mention a strange bug a user had  In ParaView 5.3.0, Linux.  All of 
his text in the ParaView GUI went white.  He reset the appearance/display 
schemes and all of the text now appears normal.

Keep calm and carry on.

Alan


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[Paraview] SWKey: How to Clean-up an STL datum set?

2017-03-20 Thread Samuel Key


Hello All,

I am working with a less than perfect STL surface. I was able to use 
PV's Clip filter spheres to remove a number of spatially isolated 
undesirable triangle clusters.  (With a new application of the Extract 
Surface Filter, I was able to use Save Data to get an updated/revised 
STL file.)


I am now working on removing triangles that have a point or an edge 
attached like a fish fin to the desired STL surface. I have successfully 
selected the undesirable fin-like triangles. Now, I want to delete (or 
Clip) these triangles to remove  them from the datum set. Right-click 
delete does not appear to be an option?


Is there some way to delete these selected STL triangles from the Datum set?

Regards,

Sam Key
FMA Development
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Re: [Paraview] Program received signal SIGFPE, Arithmetic exception.

2017-03-20 Thread Ben Boeckel

On Mon, Mar 20, 2017 at 11:31:28 -0700, Burlen Loring wrote:
> I had to apply to clang-format manually. it's up there now. changes were 
> minimal so I squashed them into the patch.

The fixes would have had to had been squashed in anyways; the robot
checks each commit individually.

> System has yet to acknowledge and re check. I assume it will
> eventually.

The new robot is silent on successful checks, so if it's silent, you're
(likely) good.

> Try as I may the clang-format script you guys are using doesn't work for 
> me.  here are the errors:
> Fedora 24:
> 
> smic:~/work/ParaView$Utilities/Scripts/clang-format.bash --amend
> YAML:4:24: error: invalid boolean
> AlignAfterOpenBracket: DontAlign
> ^
> Error reading /home/bloring/work/ParaView/.clang-format: Invalid
> argument
> 
> Maybe this is due to clang-format --version == 3.7? not sure but I won't 
> have time to re-install clang on this system, so I also tried on a newer 
> system.

Yeah, I think it requires 3.8. There is a new `Do: reformat` command
coming soon (this week ideally) to do the reformatting of your branch
for you since not everyone has a suitable clang-format just laying
around.

--Ben
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Re: [Paraview] Program received signal SIGFPE, Arithmetic exception.

2017-03-20 Thread Burlen Loring


Hi Cory,

I had to apply to clang-format manually. it's up there now. changes were 
minimal so I squashed them into the patch. System has yet to acknowledge 
and re check. I assume it will eventually.


Try as I may the clang-format script you guys are using doesn't work for 
me.  here are the errors:

Fedora 24:

   smic:~/work/ParaView$Utilities/Scripts/clang-format.bash --amend
   YAML:4:24: error: invalid boolean
   AlignAfterOpenBracket: DontAlign
   ^
   Error reading /home/bloring/work/ParaView/.clang-format: Invalid
   argument

Maybe this is due to clang-format --version == 3.7? not sure but I won't 
have time to re-install clang on this system, so I also tried on a newer 
system.


OSX Sierra:

   pipin:~/ParaView/ParaView$./Utilities/Scripts/clang-format.bash --amend
   sed: 1: "/: format\.clang-format ...": bad flag in substitute
   command: '}'
   xargs: illegal option -- d
   usage: xargs [-0opt] [-E eofstr] [-I replstr [-R replacements]] [-J
   replstr]
 [-L number] [-n number [-x]] [-P maxprocs] [-s size]
 [utility [argument ...]]

clang-format --version==4.0. what ended up working on the OSX system was

   clang-format -style="{BasedOnStyle: Mozilla, AlignAfterOpenBracket:
   DontAlign, AlignOperands: false, AlwaysBreakAfterReturnType: None,
   AlwaysBreakAfterDefinitionReturnType: None, BreakBeforeBraces:
   Allman, ColumnLimit: 100, Standard: Cpp03}" -i
   Qt/Components/pqPresetToPixmap.cxx

where style arguments were extracted from .clang-format in top level 
ParaView dir.


Burlen

On 03/17/2017 12:50 PM, Cory Quammen wrote:

Burlen,

Thanks for the patch.

With regards to clang-format, we recently enabled automatic style
enforcement checks. This way to fix is to install clang-format, run
`git clang-format` in your ParaView source directory, amend your
commit, then force push it with `git gitlab-push -f`.

- Cory

On Fri, Mar 17, 2017 at 3:36 PM, Burlen Loring  wrote:

fyi, https://gitlab.kitware.com/paraview/paraview/merge_requests/1476

it complains about clang-format, but it seems that the source file was not
formatted in that way to begin with.


On 03/17/2017 12:11 PM, Burlen Loring wrote:

Thank you guys. I poked around this morning and found the following:

The "BlueObeliskElements" is the only cmap in the default presets that
triggers the issue. It has more values than can be displayed on a single
line, and this is what triggers the FPE in the logic.

Enforcing a minimum swatch size(terminology from the code) prevents the
FPE and seems to produce the desired result of displaying all of the cmap
values in one line, although they are quite small.

a moment ago I pushed a patch onto gitlab demonstrating. Perhaps it or
something like it could be back ported to the 5.3.0 branch?

On 03/17/2017 07:09 AM, Cory Quammen wrote:

Burlen,

I've created an issue for your report. It sure looks like a bug.

https://gitlab.kitware.com/paraview/paraview/issues/17305

Ufuk,

That fix turns out to already be in v5.3.0:

commit 90e710d5792116e640d25caa8ff455ae4e65d718
Author: Sergey Sindeev 
Date:   Sun Dec 18 13:21:27 2016 +0100

  fix a compilation crash when using the latest ICC compiler

diff --git a/Qt/Components/pqPresetToPixmap.cxx
b/Qt/Components/pqPresetToPixmap.cxx
index 13f6b2e..b80fb80 100644
--- a/Qt/Components/pqPresetToPixmap.cxx
+++ b/Qt/Components/pqPresetToPixmap.cxx
@@ -254,15 +254,12 @@ QPixmap
pqPresetToPixmap::renderIndexedColorTransferFunction(
   // Now determine best value for Nh in [Nh/2,Nh-1]
   double bestQ = vtkMath::Inf();
   int best = -1;
-for (int i = Nh / 2; i < Nh; ++i)
+double ar = Nv * wmp / static_cast(hmp * Nh);
+double q = (ar >= 1.0) ? ar : 1. / ar;
+if (q < bestQ)
   {
-  double ar = Nv * wmp / static_cast(hmp * Nh);
-  double q = (ar >= 1.0) ? ar : 1. / ar;
-  if (q < bestQ)
-  {
-bestQ = q;
-best = i;
-  }
+  bestQ = q;
+  best = Nh-1;
   }
   Nh = best;
 }

Thanks to you and Sergey for pursuing this Intel compiler issue and
ParaView issue!

- Cory

On Fri, Mar 17, 2017 at 3:18 AM,  wrote:

Hi Burlen,

Your issue could be related with following,

https://software.intel.com/en-us/forums/intel-c-compiler/topic/702934

I opened a bug report in Intel form and they found a bug in that
particular source file (pqPresetToPixmap.cxx). So, if you apply the fix
you might solve the problem but i am not sure.

I hope it helps,
Regards,

--ufuk



I tried out ParaView 5.3.0 today, and I encountered the above crash.

steps to reproduce: load data (sphere source will work), set color by
var, open color map dialog, change to categorical, open choose presets
dialog, scroll down, when you get near the bottom you will get the
crash.

Program received signal SIGFPE, Arithmetic exception.
0x7660a833 in
pqPresetToPixmap::renderIndexedColorTransferFunction (this=0x5e22560,
stc=0x647f460, size=...) at
/home/bloring/w

Re: [Paraview] How to configure ParaView 5.2.0 to use off screen rendering?

2017-03-20 Thread Alessandro De Maio

Hi,
 I've just compiled the Paraview-5.3.0 superbuild with EGL. I created
an EGL dir in /usr/include with egl.h, eglext.h and eglplatform.h (taken
from www.khronos.org/registry/egl/) and I created a KHR dir in /usr/include
with khrplatform.h (taken from the same site).
ccmake already recognized the /usr/include/EGL include path for EGL and
everything was ok.

Alessandro

On Mon, Mar 20, 2017 at 3:28 PM, Dan Lipsa  wrote:

> Looking at the errors you are getting looks like
> /pan20/yzzhang/EGL/eglplatform.h
> needs  KHR/khrplatform.h
>
> Maybe your configuration uses different EGL header files than what you
> expect.
>
> DAn
>
>
> On Mon, Mar 20, 2017 at 10:22 AM, 张驭洲  wrote:
>
>>
>>
>> Thanks for your reply! But I don't know where the KHR/khrplatform.h is
>> used. When I configure paraview using ccmake, the options about EGL are
>> EGL_INCLUDE_DIR,
>> EGL_LIBRARY, EGL_gldispatch_LIBRARY, EGL_opengl_LIBRARY,
>> VTK_EGL_DEVICE_INDEX and VTK_USE_OFFSCREEN_EGL. In the path that I assigned
>> to the EGL_INCLUDE_DIR, there is khrplatform.h file. What's more, I have
>> built ParaView 5.2.0 with EGL used on another machine. That machine use
>> NVIDIA GT 730 GPU, and in the EGL_INCLUDE_DIR path, there is not a
>> khrplatform.h file, but the paraview can be built successfully and works.
>> The khrplatform.h is required by the current EGL (1.5), but my EGL version
>> is 1.4. Maybe it doesn't need that file?
>>
>> Thank you again!
>>
>> -Zhang
>>
>> -原始邮件-
>> *发件人:* "Dan Lipsa" 
>> *发送时间:* 2017年3月20日 星期一
>> *收件人:* "张驭洲" 
>> *抄送:* paraview 
>> *主题:* Re: [Paraview] How to configure ParaView 5.2.0 to use off screen
>> rendering?
>>
>>
>> It seems you are missing KHR/khrplatform.h
>> You can download it from the EGL website:
>> https://www.khronos.org/registry/EGL/
>>
>> On Sat, Mar 18, 2017 at 3:51 AM, 张驭洲  wrote:
>>
>>>
>>>
>>> Hello,
>>>
>>> I'm building ParaView 5.2.0 on a machine that uses NVIDIA Tesla K80
>>> GPUs. The K80 GPUs have no interface for monitor, so I have to use off
>>> screen rendering. It's said that EGL is a pretty good choice for this
>>> situation, but as I switch VTK_USE_OFFSCREEN and VTK_USE_OFFSCREEN_EGL to
>>> "ON" and then make,  I get these errors:
>>>
>>> Built target vtkIOImage
>>> [ 16%] Building C object VTK/ThirdParty/glew/vtkglew/CM
>>> akeFiles/vtkglew.dir/src/glew.c.o
>>> In file included from /pan20/yzzhang/EGL/egl.h:39,
>>>  from /pan20/yzzhang/ParaView-v5.2.0
>>> /VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
>>> /pan20/yzzhang/EGL/eglplatform.h:37:29: error: KHR/khrplatform.h: No
>>> such file or directory
>>> In file included from /pan20/yzzhang/EGL/egl.h:39,
>>>  from /pan20/yzzhang/ParaView-v5.2.0
>>> /VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
>>> /pan20/yzzhang/EGL/eglplatform.h:151: error: expected ‘=’, ‘,’, ‘;’,
>>> ‘asm’ or ‘__attribute__’ before ‘EGLint’
>>> In file included from /pan20/yzzhang/ParaView-v5.2.0
>>> /VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
>>> /pan20/yzzhang/EGL/egl.h:121: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
>>> ‘__attribute__’ before ‘EGLBoolean’
>>> In file included from /pan20/yzzhang/ParaView-v5.2.0
>>> /VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
>>> /pan20/yzzhang/EGL/egl.h:122: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
>>> ‘__attribute__’ before ‘EGLBoolean’
>>> /pan20/yzzhang/EGL/egl.h:123: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
>>> ‘__attribute__’ before ‘EGLContext’
>>> /pan20/yzzhang/EGL/egl.h:124: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
>>> ‘__attribute__’ before ‘EGLSurface’
>>> /pan20/yzzhang/EGL/egl.h:125: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
>>> ‘__attribute__’ before ‘EGLSurface’
>>> ..
>>>
>>> Maybe it is clear that there is something wrong with the EGL header
>>> file, but I don't know how to fix it. The operation system is CentOS 6.6.
>>> There is an integrated graphics and 6 K80 GPUs. I connect to the machine
>>> using ssh and have set headless X server using one of the K80 GPUs. I can
>>> run the glxgears test in the off screen mode, but I don'n know how to make
>>> sure that EGL is correctly setted. I want to know how to use EGL for off
>>> screen rendering.
>>>
>>> Any help would be highly appreciated!
>>>
>>> -Zhang
>>>
>>>
>>>
>>>
>>> ___
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Please keep messages on-topic and check the ParaView Wiki at:
>>> http://paraview.org/Wiki/ParaView
>>>
>>> Search the list archives at: http://markmail.org/search/?q=ParaView
>>>
>>> Follow this link to subscribe/unsubscribe:
>>> http://public.kitware.com/mailman/listinfo/paraview
>>>
>>>
>>
>>
>>
>>
>>
>
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>
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> opensource/opensource.html
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> Please keep messages on-topic and check the ParaView Wiki at:
> http://par

Re: [Paraview] [EXTERNAL] Re: Potential bug (feature request) Export Scene PV/5.3.0

2017-03-20 Thread Green, Jennifer Kathleen

Thanks, I'll let our customer know!


Jen


Jennifer Green, Team Leader
Programming & Runtime Environments Team
High Performance Computing Environments
Los Alamos National Laboratory
PO Box 1663 MS T080
Los Alamos  NM 87545

office:  505-665-8421
cell:  505-695-6437
pager:  505-664-1504


From: Scott, W Alan 
Sent: Monday, March 20, 2017 10:51 AM
To: Ayachit, Utkarsh (External Contacts); Green, Jennifer Kathleen
Cc: ParaView
Subject: RE: [EXTERNAL] Re: [Paraview] Potential bug (feature request) Export 
Scene PV/5.3.0

Just changed to "important".

> -Original Message-
> From: ParaView [mailto:paraview-boun...@paraview.org] On Behalf Of
> Utkarsh Ayachit
> Sent: Monday, March 20, 2017 10:46 AM
> To: Green, Jennifer Kathleen (LANL) 
> Cc: ParaView 
> Subject: [EXTERNAL] Re: [Paraview] Potential bug (feature request) Export
> Scene PV/5.3.0
>
> This is indeed a bug. Alan has marked it as "nice-to-have" for SC 2017.
>
>
>
> On Mon, Mar 20, 2017 at 12:21 PM, Green, Jennifer Kathleen
>  wrote:
> > We have a customer inquiring about whether there's a capability to
> > export scene save min as well as max, indicates that the max is only
> exportable.
> > Can you please advise whether this is available in 5.3.0 or if it's on
> > the roadmap for future releases?
> >
> >
> > Thanks!
> >
> >
> > This is an actual PV bug as reported by Alan Scott:
> >
> >
> > Export Scene for 2d plots misses columns
> >
> > I believe we are missing columns of information when Export Scene is
> > run for 2d plots. Here is how to replicate:
> >
> > 5.3.0, Linux, local server.
> > can.exo, all vars on, apply.
> > Select Points On. Select maybe 10 points somewhere on the can.
> > Plot Selection. Apply. Turn on only ACCL Magnitude.
> > Export Scene.
> >
> > Now, open the file. You will find columns for time, average, median,
> > min/max (I believe it is max), and q1/q3 (I believe it is the third 
> > quartile.
> >
> > What I want is time, average, median, min, max, q1 and then q3.
> >
> >
> > Thanks!
> >
> >
> > Jennifer Green
> >
> >
> > Jennifer Green, Team Leader
> > Programming & Runtime Environments Team High Performance Computing
> > Environments Los Alamos National Laboratory PO Box 1663 MS T080 Los
> > Alamos  NM 87545 
> > office:  505-665-8421
> > cell:  505-695-6437
> > pager:  505-664-1504
> >
> >
> > ___
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> >
> > Please keep messages on-topic and check the ParaView Wiki at:
> > http://paraview.org/Wiki/ParaView
> >
> > Search the list archives at: http://markmail.org/search/?q=ParaView
> >
> > Follow this link to subscribe/unsubscribe:
> > http://public.kitware.com/mailman/listinfo/paraview
> >
> ___
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Re: [Paraview] [EXTERNAL] Re: Potential bug (feature request) Export Scene PV/5.3.0

2017-03-20 Thread Scott, W Alan

Just changed to "important".

> -Original Message-
> From: ParaView [mailto:paraview-boun...@paraview.org] On Behalf Of
> Utkarsh Ayachit
> Sent: Monday, March 20, 2017 10:46 AM
> To: Green, Jennifer Kathleen (LANL) 
> Cc: ParaView 
> Subject: [EXTERNAL] Re: [Paraview] Potential bug (feature request) Export
> Scene PV/5.3.0
> 
> This is indeed a bug. Alan has marked it as "nice-to-have" for SC 2017.
> 
> 
> 
> On Mon, Mar 20, 2017 at 12:21 PM, Green, Jennifer Kathleen
>  wrote:
> > We have a customer inquiring about whether there's a capability to
> > export scene save min as well as max, indicates that the max is only
> exportable.
> > Can you please advise whether this is available in 5.3.0 or if it's on
> > the roadmap for future releases?
> >
> >
> > Thanks!
> >
> >
> > This is an actual PV bug as reported by Alan Scott:
> >
> >
> > Export Scene for 2d plots misses columns
> >
> > I believe we are missing columns of information when Export Scene is
> > run for 2d plots. Here is how to replicate:
> >
> > 5.3.0, Linux, local server.
> > can.exo, all vars on, apply.
> > Select Points On. Select maybe 10 points somewhere on the can.
> > Plot Selection. Apply. Turn on only ACCL Magnitude.
> > Export Scene.
> >
> > Now, open the file. You will find columns for time, average, median,
> > min/max (I believe it is max), and q1/q3 (I believe it is the third 
> > quartile.
> >
> > What I want is time, average, median, min, max, q1 and then q3.
> >
> >
> > Thanks!
> >
> >
> > Jennifer Green
> >
> >
> > Jennifer Green, Team Leader
> > Programming & Runtime Environments Team High Performance Computing
> > Environments Los Alamos National Laboratory PO Box 1663 MS T080 Los
> > Alamos  NM 87545 
> > office:  505-665-8421
> > cell:  505-695-6437
> > pager:  505-664-1504
> >
> >
> > ___
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> >
> > Please keep messages on-topic and check the ParaView Wiki at:
> > http://paraview.org/Wiki/ParaView
> >
> > Search the list archives at: http://markmail.org/search/?q=ParaView
> >
> > Follow this link to subscribe/unsubscribe:
> > http://public.kitware.com/mailman/listinfo/paraview
> >
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Re: [Paraview] Potential bug (feature request) Export Scene PV/5.3.0

2017-03-20 Thread Utkarsh Ayachit

This is indeed a bug. Alan has marked it as "nice-to-have" for SC 2017.



On Mon, Mar 20, 2017 at 12:21 PM, Green, Jennifer Kathleen
 wrote:
> We have a customer inquiring about whether there's a capability to export
> scene save min as well as max, indicates that the max is only exportable.
> Can you please advise whether this is available in 5.3.0 or if it's on the
> roadmap for future releases?
>
>
> Thanks!
>
>
> This is an actual PV bug as reported by Alan Scott:
>
>
> Export Scene for 2d plots misses columns
>
> I believe we are missing columns of information when Export Scene is run for
> 2d plots. Here is how to replicate:
>
> 5.3.0, Linux, local server.
> can.exo, all vars on, apply.
> Select Points On. Select maybe 10 points somewhere on the can.
> Plot Selection. Apply. Turn on only ACCL Magnitude.
> Export Scene.
>
> Now, open the file. You will find columns for time, average, median, min/max
> (I believe it is max), and q1/q3 (I believe it is the third quartile.
>
> What I want is time, average, median, min, max, q1 and then q3.
>
>
> Thanks!
>
>
> Jennifer Green
>
>
> Jennifer Green, Team Leader
> Programming & Runtime Environments Team
> High Performance Computing Environments
> Los Alamos National Laboratory
> PO Box 1663 MS T080
> Los Alamos  NM 87545
> 
> office:  505-665-8421
> cell:  505-695-6437
> pager:  505-664-1504
>
>
> ___
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Please keep messages on-topic and check the ParaView Wiki at:
> http://paraview.org/Wiki/ParaView
>
> Search the list archives at: http://markmail.org/search/?q=ParaView
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/paraview
>
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Re: [Paraview] [EXTERNAL] Potential bug (feature request) Export Scene PV/5.3.0

2017-03-20 Thread Scott, W Alan

Jennifer,
The bug you list was written for and found on PV 5.3.  It is scheduled to be 
fixed by next fall,  PV 5.5, for Supercomputing.

The user can output the data in question by using Save Data.  This will save 
all of the data from the plot selections filter, giving many more columns than 
the user wanted.  But, that is his/her fallback for now.

Alan

From: ParaView [mailto:paraview-boun...@paraview.org] On Behalf Of Green, 
Jennifer Kathleen
Sent: Monday, March 20, 2017 10:22 AM
To: ParaView 
Subject: [EXTERNAL] [Paraview] Potential bug (feature request) Export Scene 
PV/5.3.0


We have a customer inquiring about whether there's a capability to export scene 
save min as well as max, indicates that the max is only exportable.  Can you 
please advise whether this is available in 5.3.0 or if it's on the roadmap for 
future releases?



Thanks!



This is an actual PV bug as reported by Alan Scott:


Export Scene for 2d plots misses columns

I believe we are missing columns of information when Export Scene is run for 2d 
plots. Here is how to replicate:

  *   5.3.0, Linux, local server.
  *   can.exo, all vars on, apply.
  *   Select Points On. Select maybe 10 points somewhere on the can.
  *   Plot Selection. Apply. Turn on only ACCL Magnitude.
  *   Export Scene.

Now, open the file. You will find columns for time, average, median, min/max (I 
believe it is max), and q1/q3 (I believe it is the third quartile.

What I want is time, average, median, min, max, q1 and then q3.



Thanks!



Jennifer Green


Jennifer Green, Team Leader
Programming & Runtime Environments Team
High Performance Computing Environments
Los Alamos National Laboratory
PO Box 1663 MS T080
Los Alamos  NM 87545
mailto:jgr...@lanl.gov>>
office:  505-665-8421
cell:  505-695-6437
pager:  505-664-1504
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[Paraview] Potential bug (feature request) Export Scene PV/5.3.0

2017-03-20 Thread Green, Jennifer Kathleen

We have a customer inquiring about whether there's a capability to export scene 
save min as well as max, indicates that the max is only exportable.  Can you 
please advise whether this is available in 5.3.0 or if it's on the roadmap for 
future releases?


Thanks!


This is an actual PV bug as reported by Alan Scott:


Export Scene for 2d plots misses columns

I believe we are missing columns of information when Export Scene is run for 2d 
plots. Here is how to replicate:

  *   5.3.0, Linux, local server.
  *   can.exo, all vars on, apply.
  *   Select Points On. Select maybe 10 points somewhere on the can.
  *   Plot Selection. Apply. Turn on only ACCL Magnitude.
  *   Export Scene.

Now, open the file. You will find columns for time, average, median, min/max (I 
believe it is max), and q1/q3 (I believe it is the third quartile.

What I want is time, average, median, min, max, q1 and then q3.


Thanks!


Jennifer Green


Jennifer Green, Team Leader
Programming & Runtime Environments Team
High Performance Computing Environments
Los Alamos National Laboratory
PO Box 1663 MS T080
Los Alamos  NM 87545

office:  505-665-8421
cell:  505-695-6437
pager:  505-664-1504

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Re: [Paraview] How to configure ParaView 5.2.0 to use off screen rendering?

2017-03-20 Thread Dan Lipsa

Looking at the errors you are getting looks like
/pan20/yzzhang/EGL/eglplatform.h
needs  KHR/khrplatform.h

Maybe your configuration uses different EGL header files than what you
expect.

DAn


On Mon, Mar 20, 2017 at 10:22 AM, 张驭洲  wrote:

>
>
> Thanks for your reply! But I don't know where the KHR/khrplatform.h is
> used. When I configure paraview using ccmake, the options about EGL are
> EGL_INCLUDE_DIR,
> EGL_LIBRARY, EGL_gldispatch_LIBRARY, EGL_opengl_LIBRARY,
> VTK_EGL_DEVICE_INDEX and VTK_USE_OFFSCREEN_EGL. In the path that I assigned
> to the EGL_INCLUDE_DIR, there is khrplatform.h file. What's more, I have
> built ParaView 5.2.0 with EGL used on another machine. That machine use
> NVIDIA GT 730 GPU, and in the EGL_INCLUDE_DIR path, there is not a
> khrplatform.h file, but the paraview can be built successfully and works.
> The khrplatform.h is required by the current EGL (1.5), but my EGL version
> is 1.4. Maybe it doesn't need that file?
>
> Thank you again!
>
> -Zhang
>
> -原始邮件-
> *发件人:* "Dan Lipsa" 
> *发送时间:* 2017年3月20日 星期一
> *收件人:* "张驭洲" 
> *抄送:* paraview 
> *主题:* Re: [Paraview] How to configure ParaView 5.2.0 to use off screen
> rendering?
>
>
> It seems you are missing KHR/khrplatform.h
> You can download it from the EGL website:
> https://www.khronos.org/registry/EGL/
>
> On Sat, Mar 18, 2017 at 3:51 AM, 张驭洲  wrote:
>
>>
>>
>> Hello,
>>
>> I'm building ParaView 5.2.0 on a machine that uses NVIDIA Tesla K80 GPUs.
>> The K80 GPUs have no interface for monitor, so I have to use off screen
>> rendering. It's said that EGL is a pretty good choice for this situation,
>> but as I switch VTK_USE_OFFSCREEN and VTK_USE_OFFSCREEN_EGL to "ON" and
>> then make,  I get these errors:
>>
>> Built target vtkIOImage
>> [ 16%] Building C object VTK/ThirdParty/glew/vtkglew/CM
>> akeFiles/vtkglew.dir/src/glew.c.o
>> In file included from /pan20/yzzhang/EGL/egl.h:39,
>>  from /pan20/yzzhang/ParaView-v5.2.0
>> /VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
>> /pan20/yzzhang/EGL/eglplatform.h:37:29: error: KHR/khrplatform.h: No
>> such file or directory
>> In file included from /pan20/yzzhang/EGL/egl.h:39,
>>  from /pan20/yzzhang/ParaView-v5.2.0
>> /VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
>> /pan20/yzzhang/EGL/eglplatform.h:151: error: expected ‘=’, ‘,’, ‘;’,
>> ‘asm’ or ‘__attribute__’ before ‘EGLint’
>> In file included from /pan20/yzzhang/ParaView-v5.2.0
>> /VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
>> /pan20/yzzhang/EGL/egl.h:121: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
>> ‘__attribute__’ before ‘EGLBoolean’
>> In file included from /pan20/yzzhang/ParaView-v5.2.0
>> /VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
>> /pan20/yzzhang/EGL/egl.h:122: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
>> ‘__attribute__’ before ‘EGLBoolean’
>> /pan20/yzzhang/EGL/egl.h:123: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
>> ‘__attribute__’ before ‘EGLContext’
>> /pan20/yzzhang/EGL/egl.h:124: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
>> ‘__attribute__’ before ‘EGLSurface’
>> /pan20/yzzhang/EGL/egl.h:125: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
>> ‘__attribute__’ before ‘EGLSurface’
>> ..
>>
>> Maybe it is clear that there is something wrong with the EGL header file,
>> but I don't know how to fix it. The operation system is CentOS 6.6. There
>> is an integrated graphics and 6 K80 GPUs. I connect to the machine using
>> ssh and have set headless X server using one of the K80 GPUs. I can run the
>> glxgears test in the off screen mode, but I don'n know how to make sure
>> that EGL is correctly setted. I want to know how to use EGL for off screen
>> rendering.
>>
>> Any help would be highly appreciated!
>>
>> -Zhang
>>
>>
>>
>>
>> ___
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Please keep messages on-topic and check the ParaView Wiki at:
>> http://paraview.org/Wiki/ParaView
>>
>> Search the list archives at: http://markmail.org/search/?q=ParaView
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/paraview
>>
>>
>
>
>
>
>
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Re: [Paraview] How to configure ParaView 5.2.0 to use off screen rendering?

2017-03-20 Thread 张驭洲



Thanks for your reply! But I don't know where the KHR/khrplatform.h is used. 
When I configure paraview using ccmake, the options about EGL are 
EGL_INCLUDE_DIR,
EGL_LIBRARY, EGL_gldispatch_LIBRARY, EGL_opengl_LIBRARY, VTK_EGL_DEVICE_INDEX 
and VTK_USE_OFFSCREEN_EGL. In the path that I assigned to the EGL_INCLUDE_DIR, 
there is khrplatform.h file. What's more, I have built ParaView 5.2.0 with EGL 
used on another machine. That machine use NVIDIA GT 730 GPU, and in the 
EGL_INCLUDE_DIR path, there is not a khrplatform.h file, but the paraview can 
be built successfully and works. The khrplatform.h is required by the current 
EGL (1.5), but my EGL version is 1.4. Maybe it doesn't need that file?

Thank you again!

-Zhang
-原始邮件-
发件人: "Dan Lipsa" 
发送时间: 2017年3月20日 星期一
收件人: "张驭洲" 
抄送: paraview 
主题: Re: [Paraview] How to configure ParaView 5.2.0 to use off screen rendering?


It seems you are missing KHR/khrplatform.h
You can download it from the EGL website:
https://www.khronos.org/registry/EGL/



On Sat, Mar 18, 2017 at 3:51 AM, 张驭洲  wrote:


Hello,

I'm building ParaView 5.2.0 on a machine that uses NVIDIA Tesla K80 GPUs. The 
K80 GPUs have no interface for monitor, so I have to use off screen rendering. 
It's said that EGL is a pretty good choice for this situation, but as I switch 
VTK_USE_OFFSCREEN and VTK_USE_OFFSCREEN_EGL to "ON" and then make,  I get these 
errors:

Built target vtkIOImage
[ 16%] Building C object 
VTK/ThirdParty/glew/vtkglew/CMakeFiles/vtkglew.dir/src/glew.c.o
In file included from /pan20/yzzhang/EGL/egl.h:39,
 from 
/pan20/yzzhang/ParaView-v5.2.0/VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
/pan20/yzzhang/EGL/eglplatform.h:37:29: error: KHR/khrplatform.h: No such file 
or directory
In file included from /pan20/yzzhang/EGL/egl.h:39,
 from 
/pan20/yzzhang/ParaView-v5.2.0/VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
/pan20/yzzhang/EGL/eglplatform.h:151: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or 
‘__attribute__’ before ‘EGLint’
In file included from 
/pan20/yzzhang/ParaView-v5.2.0/VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
/pan20/yzzhang/EGL/egl.h:121: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or 
‘__attribute__’ before ‘EGLBoolean’
In file included from 
/pan20/yzzhang/ParaView-v5.2.0/VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
/pan20/yzzhang/EGL/egl.h:122: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or 
‘__attribute__’ before ‘EGLBoolean’
/pan20/yzzhang/EGL/egl.h:123: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or 
‘__attribute__’ before ‘EGLContext’
/pan20/yzzhang/EGL/egl.h:124: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or 
‘__attribute__’ before ‘EGLSurface’
/pan20/yzzhang/EGL/egl.h:125: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or 
‘__attribute__’ before ‘EGLSurface’
..

Maybe it is clear that there is something wrong with the EGL header file, but I 
don't know how to fix it. The operation system is CentOS 6.6. There is an 
integrated graphics and 6 K80 GPUs. I connect to the machine using ssh and have 
set headless X server using one of the K80 GPUs. I can run the glxgears test in 
the off screen mode, but I don'n know how to make sure that EGL is correctly 
setted. I want to know how to use EGL for off screen rendering.

Any help would be highly appreciated!

-Zhang




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Re: [Paraview] Program received signal SIGFPE, Arithmetic exception.

2017-03-20 Thread Ben Boeckel

On Fri, Mar 17, 2017 at 12:36:10 -0700, Burlen Loring wrote:
> fyi, https://gitlab.kitware.com/paraview/paraview/merge_requests/1476
> 
> it complains about clang-format, but it seems that the source file was 
> not formatted in that way to begin with.

When I enabled clang-format checking, I did a sweep of the repo with
clang-format.

I think the problem is that your headers aren't sorted:

#include 
#include 

--Ben
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Re: [Paraview] How to configure ParaView 5.2.0 to use off screen rendering?

2017-03-20 Thread Dan Lipsa

It seems you are missing KHR/khrplatform.h
You can download it from the EGL website:
https://www.khronos.org/registry/EGL/

On Sat, Mar 18, 2017 at 3:51 AM, 张驭洲  wrote:

>
>
> Hello,
>
> I'm building ParaView 5.2.0 on a machine that uses NVIDIA Tesla K80 GPUs.
> The K80 GPUs have no interface for monitor, so I have to use off screen
> rendering. It's said that EGL is a pretty good choice for this situation,
> but as I switch VTK_USE_OFFSCREEN and VTK_USE_OFFSCREEN_EGL to "ON" and
> then make,  I get these errors:
>
> Built target vtkIOImage
> [ 16%] Building C object VTK/ThirdParty/glew/vtkglew/
> CMakeFiles/vtkglew.dir/src/glew.c.o
> In file included from /pan20/yzzhang/EGL/egl.h:39,
>  from /pan20/yzzhang/ParaView-v5.2.
> 0/VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
> /pan20/yzzhang/EGL/eglplatform.h:37:29: error: KHR/khrplatform.h: No such
> file or directory
> In file included from /pan20/yzzhang/EGL/egl.h:39,
>  from /pan20/yzzhang/ParaView-v5.2.
> 0/VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
> /pan20/yzzhang/EGL/eglplatform.h:151: error: expected ‘=’, ‘,’, ‘;’,
> ‘asm’ or ‘__attribute__’ before ‘EGLint’
> In file included from /pan20/yzzhang/ParaView-v5.2.
> 0/VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
> /pan20/yzzhang/EGL/egl.h:121: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
> ‘__attribute__’ before ‘EGLBoolean’
> In file included from /pan20/yzzhang/ParaView-v5.2.
> 0/VTK/ThirdParty/glew/vtkglew/src/glew.c:38:
> /pan20/yzzhang/EGL/egl.h:122: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
> ‘__attribute__’ before ‘EGLBoolean’
> /pan20/yzzhang/EGL/egl.h:123: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
> ‘__attribute__’ before ‘EGLContext’
> /pan20/yzzhang/EGL/egl.h:124: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
> ‘__attribute__’ before ‘EGLSurface’
> /pan20/yzzhang/EGL/egl.h:125: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or
> ‘__attribute__’ before ‘EGLSurface’
> ..
>
> Maybe it is clear that there is something wrong with the EGL header file,
> but I don't know how to fix it. The operation system is CentOS 6.6. There
> is an integrated graphics and 6 K80 GPUs. I connect to the machine using
> ssh and have set headless X server using one of the K80 GPUs. I can run the
> glxgears test in the off screen mode, but I don'n know how to make sure
> that EGL is correctly setted. I want to know how to use EGL for off screen
> rendering.
>
> Any help would be highly appreciated!
>
> -Zhang
>
>
>
>
> ___
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at http://www.kitware.com/
> opensource/opensource.html
>
> Please keep messages on-topic and check the ParaView Wiki at:
> http://paraview.org/Wiki/ParaView
>
> Search the list archives at: http://markmail.org/search/?q=ParaView
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/paraview
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>
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Re: [Paraview] How to configure ParaView 5.2.0 to use off screen rendering?

[Paraview] White (or other strange text) on Linux - Solved

[Paraview] SWKey: How to Clean-up an STL datum set?

Re: [Paraview] Program received signal SIGFPE, Arithmetic exception.

Re: [Paraview] Program received signal SIGFPE, Arithmetic exception.

Re: [Paraview] How to configure ParaView 5.2.0 to use off screen rendering?

Re: [Paraview] [EXTERNAL] Re: Potential bug (feature request) Export Scene PV/5.3.0

Re: [Paraview] [EXTERNAL] Re: Potential bug (feature request) Export Scene PV/5.3.0

Re: [Paraview] Potential bug (feature request) Export Scene PV/5.3.0

Re: [Paraview] [EXTERNAL] Potential bug (feature request) Export Scene PV/5.3.0

[Paraview] Potential bug (feature request) Export Scene PV/5.3.0

Re: [Paraview] How to configure ParaView 5.2.0 to use off screen rendering?

Re: [Paraview] How to configure ParaView 5.2.0 to use off screen rendering?

Re: [Paraview] Program received signal SIGFPE, Arithmetic exception.

Re: [Paraview] How to configure ParaView 5.2.0 to use off screen rendering?

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