[Paraview] Compiling 5.0.0-RC1 vit VisItBridge linking failure on Fedora 23
Hello, I'm trying to compile Paraview with MPI and VisIt bridge on Fedora 23 with OpenMPI. Paraview compiles, and runs fine without VisitBridge. If I enable the PARAVIEW_USE_VISITBRIDGE option (I'm using ccmake), I get the following error: [ 26%] Linking CXX shared library ../../../lib/libvtkIOVisItBridge-pv5.0.so CMakeFiles/vtkIOVisItBridge.dir/vtkVisItChomboReader.cxx.o: In function `MPI::Win::Set_name(char const*)': vtkVisItChomboReader.cxx:(.text._ZN3MPI3Win8Set_nameEPKc[_ZN3MPI3Win8Set_nameEPKc]+0x5): undefined reference to `MPI_Win_set_name' CMakeFiles/vtkIOVisItBridge.dir/vtkVisItChomboReader.cxx.o: In function `MPI::Win::Set_attr(int, void const*)': vtkVisItChomboReader.cxx:(.text._ZN3MPI3Win8Set_attrEiPKv[_ZN3MPI3Win8Set_attrEiPKv]+0x5): undefined reference to `MPI_Win_set_attr' . snip a couple hundred similar lines . vtkVisItChomboReader.cxx:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x6e): undefined reference to `ompi_mpi_comm_null' CMakeFiles/vtkIOVisItBridge.dir/vtkVisItChomboReader.cxx.o:(.data.rel.ro._ZTVN3MPI8DatatypeE[_ZTVN3MPI8DatatypeE]+0x78): undefined reference to `MPI::Datatype::Free()' CMakeFiles/vtkIOVisItBridge.dir/vtkVisItChomboReader.cxx.o:(.data.rel.ro._ZTVN3MPI3WinE[_ZTVN3MPI3WinE]+0x48): undefined reference to `MPI::Win::Free()' collect2: error: ld returned 1 exit status Utilities/VisItBridge/databases/CMakeFiles/vtkIOVisItBridge.dir/build.make:8485: recipe for target 'lib/libvtkIOVisItBridge-pv5.0.so.1' failed make[2]: *** [lib/libvtkIOVisItBridge-pv5.0.so.1] Error 1 CMakeFiles/Makefile2:13468: recipe for target 'Utilities/VisItBridge/databases/CMakeFiles/vtkIOVisItBridge.dir/all' failed make[1]: *** [Utilities/VisItBridge/databases/CMakeFiles/vtkIOVisItBridge.dir/all] Error 2 Makefile:149: recipe for target 'all' failed make: *** [all] Error 2 Any ideas how to fix this? ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Search the list archives at: http://markmail.org/search/?q=ParaView Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/paraview
[Paraview] Using XDMF to visualize particle tracks stored in HDF5 file
Hello, I want to visualize tracks of a couple thousand particles from and HDF5 file (optionally including time evolution of the positions, but for starters, tracks would be sufficient). The HDF5 file is organized as follows: - Each particle is in its own group identified by particle ID (an integer in the code) - the group contains several 1D arrays which store time evolution of the particle: t - the time x, y, z - coordinates (i.e. in time t[4], coordinates are x[4], y[4], z[4]) momentum, energy, etc. So something like: particles.h5:/123456/t particles.h5:/123456/x particles.h5:/123456/y particles.h5:/123456/z particles.h5:/123456/ene The length of the arrays is different for each particle, as they enter and exit the area of interest in different times. What I woud want to do is to draw the trajectories of all these particles (or a subset, etc. as there is thousands of them). How do I describe this in XDMF? Should I use the Polyvertex Topology, as my file stores unconnected points? How do I then express the fact, that a set of points is a sort of timeseries belonging to a single particle, and that they form a track? Thanks for any tips, Jiri ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Search the list archives at: http://markmail.org/search/?q=ParaView Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/paraview
