Re: [Paraview] Cannot get parallelism working in paraview 4.2.0 on our clusters (works with 4.1.0)

2014-11-26 Thread Cook, Rich
Happy  Thanksgiving!  :-)

On Nov 26, 2014, at 3:53 PM, Berk Geveci 
mailto:berk.gev...@kitware.com>> wrote:

Thanks Rich. The molecule data gets into the range that requires parallel 
visualization extremely rarely. However, this may affect others, such as those 
loading large vtu files. We'll make sure that this is fixed very soon.

-berk

On Tue, Nov 25, 2014 at 5:15 PM, Cook, Rich 
mailto:coo...@llnl.gov>> wrote:
I do not have an urgent need to view this data.  However, be advised that I got 
it from what appears to be the PDB canonical source, so I assumed our molecular 
people would appreciate being able to visualize their stuff. This kind of model 
doesn’t usually get that big, though, probably.

http://www.rcsb.org/pdb/explore.do?structureId=1lmb

Thank you kindly.  No workaround is needed.
— Rich

On Nov 25, 2014, at 12:55 PM, Berk Geveci 
mailto:berk.gev...@kitware.com>> wrote:

Marcus will investigate the errors.

They are not related to why the dataset is no longer distributed. There was 
code in 4.1 that automatically redistributed data from serial readers using a 
very naive approach. That code is no longer there. We are investigating various 
options of improving on the 4.1 functionality. I would normally say that you 
can use the D3 filter to distribute the data but I was cautious and tried it 
first. It crashes :-( This dataset has string arrays in it, which it seems D3 
does not handle.

Do you have a particular use case driving parallel PDB capability? If you do, I 
can find some workarounds of these issues. If not, D3 should nicely work on 
most polydata and unstructured grid sources. We are working on better ways of 
redistributing the other data types.

Best,
-berk

On Tue, Nov 25, 2014 at 9:44 AM, Marcus D. Hanwell 
mailto:marcus.hanw...@kitware.com>> wrote:
Hi,

I think I know the cause, the PDB reader was modified to produce a vtkMolecule 
in addition to the vtkPolyData I think it has always produced. It looks like 
there is a packaging issue, and the XML file cannot be found. We should 
probably just statically compile the file in, or convert it to a header as the 
data is pretty static - atomic radii, colors, etc.

Marcus


On Tue, Nov 25, 2014 at 9:06 AM, Berk Geveci 
mailto:berk.gev...@kitware.com>> wrote:
Hey Rich,

Can you send me the dataset?

Best,
-berk

On Mon, Nov 24, 2014 at 7:25 PM, Cook, Rich 
mailto:coo...@llnl.gov>> wrote:
Hi,
I have recently compiled paraview 4.2.0 on our clusters in the same way I 
compile with 4.1.0 and am getting some errors.
I run pvserver in parallel, and it does not give any weird outputs.
I connect with it from my desktop (Mac OS X).  I can see in the desktop GUI 
that four remote servers are connected.
I open up a PDB dataset and it is different.  I see two “Output” objects in the 
pipeline browser.  This is different than the behavior in 4.1.0.



I click Apply and get smacked in the face with an error dialog.

ERROR: In 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry/vtkBlueObeliskDataParser.cxx,
 line 68
vtkBlueObeliskDataParser (0x7fea5e2a9980): Cannot find elements.xml. Checked 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview-build/CMakeFiles/__macos_install/share/paraview-4.2/vtkDomainsChemistry
 and 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry


ERROR: In 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/IO/XMLParser/vtkXMLParser.cxx,
 line 382
vtkBlueObeliskDataParser (0x7fea5e2a9980): Parse() called with no Stream set.


ERROR: In 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Common/ExecutionModel/vtkDemandDrivenPipeline.cxx,
 line 710
vtkPVDataRepresentationPipeline (0x7fea5e2a4d80): Input port 0 of algorithm 
vtkMoleculeRepresentation(0x7fea56c005d0) has 0 connections but is not optional.


I’m unable to color by process scalar ID, or more precisely, the Filter seems 
to get applied but the color does not change.  Appears all work is done on 
process 0.

Something is vewwwy scwewwy.

Help?


--
✐Richard Cook
✇ Lawrence Livermore National Laboratory
Bldg-453 Rm-4024, Mail Stop L-557
7000 East Avenue,  Livermore, CA, 94550, USA
☎ (office) (925) 423-9605
☎ (fax) (925) 423-6961
---
Information Management & Graphics Grp., Services & Development Div., Integrated 
Computing & Communications Dept.
(opinions expressed herein are mine and not those of LLNL)




___
Powered by www.kitware.com

Visit other Kitware open-source projects at 
http://www.kitware.com/opensource/opensource.html

Please keep messages on-topic and check the ParaView Wiki at: 
http://paraview.org/Wiki/ParaView

Follow this link to subscribe/unsubscribe:
http

Re: [Paraview] Cannot get parallelism working in paraview 4.2.0 on our clusters (works with 4.1.0)

2014-11-26 Thread Berk Geveci
Thanks Rich. The molecule data gets into the range that requires parallel
visualization extremely rarely. However, this may affect others, such as
those loading large vtu files. We'll make sure that this is fixed very soon.

-berk

On Tue, Nov 25, 2014 at 5:15 PM, Cook, Rich  wrote:

>  I do not have an urgent need to view this data.  However, be advised that
> I got it from what appears to be the PDB canonical source, so I assumed our
> molecular people would appreciate being able to visualize their stuff. This
> kind of model doesn’t usually get that big, though, probably.
>
> http://www.rcsb.org/pdb/explore.do?structureId=1lmb
>
>  Thank you kindly.  No workaround is needed.
> — Rich
>
>  On Nov 25, 2014, at 12:55 PM, Berk Geveci 
> wrote:
>
>  Marcus will investigate the errors.
>
>  They are not related to why the dataset is no longer distributed. There
> was code in 4.1 that automatically redistributed data from serial readers
> using a very naive approach. That code is no longer there. We are
> investigating various options of improving on the 4.1 functionality. I
> would normally say that you can use the D3 filter to distribute the data
> but I was cautious and tried it first. It crashes :-( This dataset has
> string arrays in it, which it seems D3 does not handle.
>
>  Do you have a particular use case driving parallel PDB capability? If
> you do, I can find some workarounds of these issues. If not, D3 should
> nicely work on most polydata and unstructured grid sources. We are working
> on better ways of redistributing the other data types.
>
>  Best,
> -berk
>
> On Tue, Nov 25, 2014 at 9:44 AM, Marcus D. Hanwell <
> marcus.hanw...@kitware.com> wrote:
>
>>  Hi,
>>
>>  I think I know the cause, the PDB reader was modified to produce a
>> vtkMolecule in addition to the vtkPolyData I think it has always produced.
>> It looks like there is a packaging issue, and the XML file cannot be found.
>> We should probably just statically compile the file in, or convert it to a
>> header as the data is pretty static - atomic radii, colors, etc.
>>
>>  Marcus
>>
>>
>>  On Tue, Nov 25, 2014 at 9:06 AM, Berk Geveci 
>> wrote:
>>
>>> Hey Rich,
>>>
>>>  Can you send me the dataset?
>>>
>>>  Best,
>>> -berk
>>>
>>>  On Mon, Nov 24, 2014 at 7:25 PM, Cook, Rich  wrote:
>>>
  Hi,
 I have recently compiled paraview 4.2.0 on our clusters in the same way
 I compile with 4.1.0 and am getting some errors.
 I run pvserver in parallel, and it does not give any weird outputs.
 I connect with it from my desktop (Mac OS X).  I can see in the desktop
 GUI that four remote servers are connected.
 I open up a PDB dataset and it is different.  I see two “Output”
 objects in the pipeline browser.  This is different than the behavior in
 4.1.0.

  

  I click Apply and get smacked in the face with an error dialog.

  ERROR: In
 /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry/vtkBlueObeliskDataParser.cxx,
 line 68
 vtkBlueObeliskDataParser (0x7fea5e2a9980): Cannot find elements.xml.
 Checked
 /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview-build/CMakeFiles/__macos_install/share/paraview-4.2/vtkDomainsChemistry
 and
 /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry


  ERROR: In
 /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/IO/XMLParser/vtkXMLParser.cxx,
 line 382
 vtkBlueObeliskDataParser (0x7fea5e2a9980): Parse() called with no
 Stream set.


  ERROR: In
 /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Common/ExecutionModel/vtkDemandDrivenPipeline.cxx,
 line 710
 vtkPVDataRepresentationPipeline (0x7fea5e2a4d80): Input port 0 of
 algorithm vtkMoleculeRepresentation(0x7fea56c005d0) has 0 connections but
 is not optional.


   I’m unable to color by process scalar ID, or more precisely, the
 Filter seems to get applied but the color does not change.  Appears all
 work is done on process 0.

  Something is vewwwy scwewwy.

  Help?


  --
 ✐Richard Cook
 ✇ Lawrence Livermore National Laboratory
 Bldg-453 Rm-4024, Mail Stop L-557
 7000 East Avenue,  Livermore, CA, 94550, USA
 ☎ (office) (925) 423-9605
 ☎ (fax) (925) 423-6961
 ---
 Information Management & Graphics Grp., Services & Development Div.,
 Integrated Computing & Communications Dept.
 (opinions expressed herein are mine and not those of LLNL)




  ___
 Powered by www.kitware.com

 Visit other Kitware open-source projects at
 http://ww

Re: [Paraview] Cannot get parallelism working in paraview 4.2.0 on our clusters (works with 4.1.0)

2014-11-25 Thread Cook, Rich
I do not have an urgent need to view this data.  However, be advised that I got 
it from what appears to be the PDB canonical source, so I assumed our molecular 
people would appreciate being able to visualize their stuff. This kind of model 
doesn’t usually get that big, though, probably.

http://www.rcsb.org/pdb/explore.do?structureId=1lmb

Thank you kindly.  No workaround is needed.
— Rich

On Nov 25, 2014, at 12:55 PM, Berk Geveci 
mailto:berk.gev...@kitware.com>> wrote:

Marcus will investigate the errors.

They are not related to why the dataset is no longer distributed. There was 
code in 4.1 that automatically redistributed data from serial readers using a 
very naive approach. That code is no longer there. We are investigating various 
options of improving on the 4.1 functionality. I would normally say that you 
can use the D3 filter to distribute the data but I was cautious and tried it 
first. It crashes :-( This dataset has string arrays in it, which it seems D3 
does not handle.

Do you have a particular use case driving parallel PDB capability? If you do, I 
can find some workarounds of these issues. If not, D3 should nicely work on 
most polydata and unstructured grid sources. We are working on better ways of 
redistributing the other data types.

Best,
-berk

On Tue, Nov 25, 2014 at 9:44 AM, Marcus D. Hanwell 
mailto:marcus.hanw...@kitware.com>> wrote:
Hi,

I think I know the cause, the PDB reader was modified to produce a vtkMolecule 
in addition to the vtkPolyData I think it has always produced. It looks like 
there is a packaging issue, and the XML file cannot be found. We should 
probably just statically compile the file in, or convert it to a header as the 
data is pretty static - atomic radii, colors, etc.

Marcus


On Tue, Nov 25, 2014 at 9:06 AM, Berk Geveci 
mailto:berk.gev...@kitware.com>> wrote:
Hey Rich,

Can you send me the dataset?

Best,
-berk

On Mon, Nov 24, 2014 at 7:25 PM, Cook, Rich 
mailto:coo...@llnl.gov>> wrote:
Hi,
I have recently compiled paraview 4.2.0 on our clusters in the same way I 
compile with 4.1.0 and am getting some errors.
I run pvserver in parallel, and it does not give any weird outputs.
I connect with it from my desktop (Mac OS X).  I can see in the desktop GUI 
that four remote servers are connected.
I open up a PDB dataset and it is different.  I see two “Output” objects in the 
pipeline browser.  This is different than the behavior in 4.1.0.



I click Apply and get smacked in the face with an error dialog.

ERROR: In 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry/vtkBlueObeliskDataParser.cxx,
 line 68
vtkBlueObeliskDataParser (0x7fea5e2a9980): Cannot find elements.xml. Checked 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview-build/CMakeFiles/__macos_install/share/paraview-4.2/vtkDomainsChemistry
 and 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry


ERROR: In 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/IO/XMLParser/vtkXMLParser.cxx,
 line 382
vtkBlueObeliskDataParser (0x7fea5e2a9980): Parse() called with no Stream set.


ERROR: In 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Common/ExecutionModel/vtkDemandDrivenPipeline.cxx,
 line 710
vtkPVDataRepresentationPipeline (0x7fea5e2a4d80): Input port 0 of algorithm 
vtkMoleculeRepresentation(0x7fea56c005d0) has 0 connections but is not optional.


I’m unable to color by process scalar ID, or more precisely, the Filter seems 
to get applied but the color does not change.  Appears all work is done on 
process 0.

Something is vewwwy scwewwy.

Help?


--
✐Richard Cook
✇ Lawrence Livermore National Laboratory
Bldg-453 Rm-4024, Mail Stop L-557
7000 East Avenue,  Livermore, CA, 94550, USA
☎ (office) (925) 423-9605
☎ (fax) (925) 423-6961
---
Information Management & Graphics Grp., Services & Development Div., Integrated 
Computing & Communications Dept.
(opinions expressed herein are mine and not those of LLNL)




___
Powered by www.kitware.com

Visit other Kitware open-source projects at 
http://www.kitware.com/opensource/opensource.html

Please keep messages on-topic and check the ParaView Wiki at: 
http://paraview.org/Wiki/ParaView

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/paraview



___
Powered by www.kitware.com

Visit other Kitware open-source projects at 
http://www.kitware.com/opensource/opensource.html

Please keep messages on-topic and check the ParaView Wiki at: 
http://paraview.org/Wiki/ParaView

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailma

Re: [Paraview] Cannot get parallelism working in paraview 4.2.0 on our clusters (works with 4.1.0)

2014-11-25 Thread Berk Geveci
Marcus will investigate the errors.

They are not related to why the dataset is no longer distributed. There was
code in 4.1 that automatically redistributed data from serial readers using
a very naive approach. That code is no longer there. We are investigating
various options of improving on the 4.1 functionality. I would normally say
that you can use the D3 filter to distribute the data but I was cautious
and tried it first. It crashes :-( This dataset has string arrays in it,
which it seems D3 does not handle.

Do you have a particular use case driving parallel PDB capability? If you
do, I can find some workarounds of these issues. If not, D3 should nicely
work on most polydata and unstructured grid sources. We are working on
better ways of redistributing the other data types.

Best,
-berk

On Tue, Nov 25, 2014 at 9:44 AM, Marcus D. Hanwell <
marcus.hanw...@kitware.com> wrote:

> Hi,
>
> I think I know the cause, the PDB reader was modified to produce a
> vtkMolecule in addition to the vtkPolyData I think it has always produced.
> It looks like there is a packaging issue, and the XML file cannot be found.
> We should probably just statically compile the file in, or convert it to a
> header as the data is pretty static - atomic radii, colors, etc.
>
> Marcus
>
>
> On Tue, Nov 25, 2014 at 9:06 AM, Berk Geveci 
> wrote:
>
>> Hey Rich,
>>
>> Can you send me the dataset?
>>
>> Best,
>> -berk
>>
>> On Mon, Nov 24, 2014 at 7:25 PM, Cook, Rich  wrote:
>>
>>>  Hi,
>>> I have recently compiled paraview 4.2.0 on our clusters in the same way
>>> I compile with 4.1.0 and am getting some errors.
>>> I run pvserver in parallel, and it does not give any weird outputs.
>>> I connect with it from my desktop (Mac OS X).  I can see in the desktop
>>> GUI that four remote servers are connected.
>>> I open up a PDB dataset and it is different.  I see two “Output” objects
>>> in the pipeline browser.  This is different than the behavior in 4.1.0.
>>>
>>>
>>>  I click Apply and get smacked in the face with an error dialog.
>>>
>>>  ERROR: In
>>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry/vtkBlueObeliskDataParser.cxx,
>>> line 68
>>> vtkBlueObeliskDataParser (0x7fea5e2a9980): Cannot find elements.xml.
>>> Checked
>>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview-build/CMakeFiles/__macos_install/share/paraview-4.2/vtkDomainsChemistry
>>> and
>>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry
>>>
>>>
>>>  ERROR: In
>>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/IO/XMLParser/vtkXMLParser.cxx,
>>> line 382
>>> vtkBlueObeliskDataParser (0x7fea5e2a9980): Parse() called with no Stream
>>> set.
>>>
>>>
>>>  ERROR: In
>>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Common/ExecutionModel/vtkDemandDrivenPipeline.cxx,
>>> line 710
>>> vtkPVDataRepresentationPipeline (0x7fea5e2a4d80): Input port 0 of
>>> algorithm vtkMoleculeRepresentation(0x7fea56c005d0) has 0 connections but
>>> is not optional.
>>>
>>>
>>>   I’m unable to color by process scalar ID, or more precisely, the
>>> Filter seems to get applied but the color does not change.  Appears all
>>> work is done on process 0.
>>>
>>>  Something is vewwwy scwewwy.
>>>
>>>  Help?
>>>
>>>
>>>  --
>>> ✐Richard Cook
>>> ✇ Lawrence Livermore National Laboratory
>>> Bldg-453 Rm-4024, Mail Stop L-557
>>> 7000 East Avenue,  Livermore, CA, 94550, USA
>>> ☎ (office) (925) 423-9605
>>> ☎ (fax) (925) 423-6961
>>> ---
>>> Information Management & Graphics Grp., Services & Development Div.,
>>> Integrated Computing & Communications Dept.
>>> (opinions expressed herein are mine and not those of LLNL)
>>>
>>>
>>>
>>>
>>> ___
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Please keep messages on-topic and check the ParaView Wiki at:
>>> http://paraview.org/Wiki/ParaView
>>>
>>> Follow this link to subscribe/unsubscribe:
>>> http://public.kitware.com/mailman/listinfo/paraview
>>>
>>>
>>
>> ___
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Please keep messages on-topic and check the ParaView Wiki at:
>> http://paraview.org/Wiki/ParaView
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/paraview
>>
>>
>
___
Powered by www.kitware.com

Visit other Kitware open-source projects at 
http://www.kitware.com/opensource/opensource.html

Please keep messages on-topic and check the ParaView Wiki at: 
ht

Re: [Paraview] Cannot get parallelism working in paraview 4.2.0 on our clusters (works with 4.1.0)

2014-11-25 Thread Marcus D. Hanwell
Hi,

I think I know the cause, the PDB reader was modified to produce a
vtkMolecule in addition to the vtkPolyData I think it has always produced.
It looks like there is a packaging issue, and the XML file cannot be found.
We should probably just statically compile the file in, or convert it to a
header as the data is pretty static - atomic radii, colors, etc.

Marcus

On Tue, Nov 25, 2014 at 9:06 AM, Berk Geveci 
wrote:

> Hey Rich,
>
> Can you send me the dataset?
>
> Best,
> -berk
>
> On Mon, Nov 24, 2014 at 7:25 PM, Cook, Rich  wrote:
>
>>  Hi,
>> I have recently compiled paraview 4.2.0 on our clusters in the same way I
>> compile with 4.1.0 and am getting some errors.
>> I run pvserver in parallel, and it does not give any weird outputs.
>> I connect with it from my desktop (Mac OS X).  I can see in the desktop
>> GUI that four remote servers are connected.
>> I open up a PDB dataset and it is different.  I see two “Output” objects
>> in the pipeline browser.  This is different than the behavior in 4.1.0.
>>
>>
>>  I click Apply and get smacked in the face with an error dialog.
>>
>>  ERROR: In
>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry/vtkBlueObeliskDataParser.cxx,
>> line 68
>> vtkBlueObeliskDataParser (0x7fea5e2a9980): Cannot find elements.xml.
>> Checked
>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview-build/CMakeFiles/__macos_install/share/paraview-4.2/vtkDomainsChemistry
>> and
>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry
>>
>>
>>  ERROR: In
>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/IO/XMLParser/vtkXMLParser.cxx,
>> line 382
>> vtkBlueObeliskDataParser (0x7fea5e2a9980): Parse() called with no Stream
>> set.
>>
>>
>>  ERROR: In
>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Common/ExecutionModel/vtkDemandDrivenPipeline.cxx,
>> line 710
>> vtkPVDataRepresentationPipeline (0x7fea5e2a4d80): Input port 0 of
>> algorithm vtkMoleculeRepresentation(0x7fea56c005d0) has 0 connections but
>> is not optional.
>>
>>
>>   I’m unable to color by process scalar ID, or more precisely, the
>> Filter seems to get applied but the color does not change.  Appears all
>> work is done on process 0.
>>
>>  Something is vewwwy scwewwy.
>>
>>  Help?
>>
>>
>>  --
>> ✐Richard Cook
>> ✇ Lawrence Livermore National Laboratory
>> Bldg-453 Rm-4024, Mail Stop L-557
>> 7000 East Avenue,  Livermore, CA, 94550, USA
>> ☎ (office) (925) 423-9605
>> ☎ (fax) (925) 423-6961
>> ---
>> Information Management & Graphics Grp., Services & Development Div.,
>> Integrated Computing & Communications Dept.
>> (opinions expressed herein are mine and not those of LLNL)
>>
>>
>>
>>
>> ___
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Please keep messages on-topic and check the ParaView Wiki at:
>> http://paraview.org/Wiki/ParaView
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/paraview
>>
>>
>
> ___
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Please keep messages on-topic and check the ParaView Wiki at:
> http://paraview.org/Wiki/ParaView
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/paraview
>
>
___
Powered by www.kitware.com

Visit other Kitware open-source projects at 
http://www.kitware.com/opensource/opensource.html

Please keep messages on-topic and check the ParaView Wiki at: 
http://paraview.org/Wiki/ParaView

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/paraview


Re: [Paraview] Cannot get parallelism working in paraview 4.2.0 on our clusters (works with 4.1.0)

2014-11-25 Thread Berk Geveci
Hey Rich,

Can you send me the dataset?

Best,
-berk

On Mon, Nov 24, 2014 at 7:25 PM, Cook, Rich  wrote:

>  Hi,
> I have recently compiled paraview 4.2.0 on our clusters in the same way I
> compile with 4.1.0 and am getting some errors.
> I run pvserver in parallel, and it does not give any weird outputs.
> I connect with it from my desktop (Mac OS X).  I can see in the desktop
> GUI that four remote servers are connected.
> I open up a PDB dataset and it is different.  I see two “Output” objects
> in the pipeline browser.  This is different than the behavior in 4.1.0.
>
>
>  I click Apply and get smacked in the face with an error dialog.
>
>  ERROR: In
> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry/vtkBlueObeliskDataParser.cxx,
> line 68
> vtkBlueObeliskDataParser (0x7fea5e2a9980): Cannot find elements.xml.
> Checked
> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview-build/CMakeFiles/__macos_install/share/paraview-4.2/vtkDomainsChemistry
> and
> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry
>
>
>  ERROR: In
> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/IO/XMLParser/vtkXMLParser.cxx,
> line 382
> vtkBlueObeliskDataParser (0x7fea5e2a9980): Parse() called with no Stream
> set.
>
>
>  ERROR: In
> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Common/ExecutionModel/vtkDemandDrivenPipeline.cxx,
> line 710
> vtkPVDataRepresentationPipeline (0x7fea5e2a4d80): Input port 0 of
> algorithm vtkMoleculeRepresentation(0x7fea56c005d0) has 0 connections but
> is not optional.
>
>
>   I’m unable to color by process scalar ID, or more precisely, the Filter
> seems to get applied but the color does not change.  Appears all work is
> done on process 0.
>
>  Something is vewwwy scwewwy.
>
>  Help?
>
>
>  --
> ✐Richard Cook
> ✇ Lawrence Livermore National Laboratory
> Bldg-453 Rm-4024, Mail Stop L-557
> 7000 East Avenue,  Livermore, CA, 94550, USA
> ☎ (office) (925) 423-9605
> ☎ (fax) (925) 423-6961
> ---
> Information Management & Graphics Grp., Services & Development Div.,
> Integrated Computing & Communications Dept.
> (opinions expressed herein are mine and not those of LLNL)
>
>
>
>
> ___
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Please keep messages on-topic and check the ParaView Wiki at:
> http://paraview.org/Wiki/ParaView
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/paraview
>
>
___
Powered by www.kitware.com

Visit other Kitware open-source projects at 
http://www.kitware.com/opensource/opensource.html

Please keep messages on-topic and check the ParaView Wiki at: 
http://paraview.org/Wiki/ParaView

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/paraview


[Paraview] Cannot get parallelism working in paraview 4.2.0 on our clusters (works with 4.1.0)

2014-11-24 Thread Cook, Rich
Hi,
I have recently compiled paraview 4.2.0 on our clusters in the same way I 
compile with 4.1.0 and am getting some errors.
I run pvserver in parallel, and it does not give any weird outputs.
I connect with it from my desktop (Mac OS X).  I can see in the desktop GUI 
that four remote servers are connected.
I open up a PDB dataset and it is different.  I see two “Output” objects in the 
pipeline browser.  This is different than the behavior in 4.1.0.

[cid:914AC27C-18D5-42AC-95B6-7668C8B7059B@llnl.gov]

I click Apply and get smacked in the face with an error dialog.

ERROR: In 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry/vtkBlueObeliskDataParser.cxx,
 line 68
vtkBlueObeliskDataParser (0x7fea5e2a9980): Cannot find elements.xml. Checked 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview-build/CMakeFiles/__macos_install/share/paraview-4.2/vtkDomainsChemistry
 and 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry


ERROR: In 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/IO/XMLParser/vtkXMLParser.cxx,
 line 382
vtkBlueObeliskDataParser (0x7fea5e2a9980): Parse() called with no Stream set.


ERROR: In 
/Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Common/ExecutionModel/vtkDemandDrivenPipeline.cxx,
 line 710
vtkPVDataRepresentationPipeline (0x7fea5e2a4d80): Input port 0 of algorithm 
vtkMoleculeRepresentation(0x7fea56c005d0) has 0 connections but is not optional.


I’m unable to color by process scalar ID, or more precisely, the Filter seems 
to get applied but the color does not change.  Appears all work is done on 
process 0.

Something is vewwwy scwewwy.

Help?


--
✐Richard Cook
✇ Lawrence Livermore National Laboratory
Bldg-453 Rm-4024, Mail Stop L-557
7000 East Avenue,  Livermore, CA, 94550, USA
☎ (office) (925) 423-9605
☎ (fax) (925) 423-6961
---
Information Management & Graphics Grp., Services & Development Div., Integrated 
Computing & Communications Dept.
(opinions expressed herein are mine and not those of LLNL)



___
Powered by www.kitware.com

Visit other Kitware open-source projects at 
http://www.kitware.com/opensource/opensource.html

Please keep messages on-topic and check the ParaView Wiki at: 
http://paraview.org/Wiki/ParaView

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/paraview