[Paraview] animating csv line chart

[Randy Hessel]

Dear ParaView List-
>  
> A transient dataset is read into ParaView and visualized in RenderView. A csv 
> file is also read in and is plotted as a line chart in LineChartView. The csv 
> file has to columns, time and a scalar. The views are side-by-side. The line 
> chart horizontal axis covers the same time as the rendered-transient dataset. 
> Does anyone know if there is a way to display a transient marker on the line 
> chart so that it is easy to see the current time on the line chart? It would 
> then be easy to relate the RenderView and LineChartView views. If this is not 
> possible with a csv file, do you know if another file format would provide 
> this capability? The csv scalar was generated outside of ParaView. 
>  
> -thanks, Randy
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Re: [Paraview] CMake error from VTKConfig.cmake

[Christoph Grüninger]

Hi Utkarsh,
thanks for the hint. But I got a linker error instead. I attached the
error below. pthread is found by CMake.

Regarding the log and/or VTKmConfig.cmake, it'll take me a couple of
days to provide these. I use the online frontend and have no access to
arbitrary files. I have to use obs to create a local copy and compile it
here.

Bye
Chirstoph


Error:

> [  487s] /usr/bin/gcc -fPIC -fmessage-length=0 -grecord-gcc-switches -O2 
> -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables 
> -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG   -w -w -O2 -g 
> -DNDEBUG  -Wl,-lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,now   -shared 
> -Wl,-soname,libvtklzma-pv5.5.so.1 -o ../../../../lib/libvtklzma-pv5.5.so.1 
> CMakeFiles/vtklzma.dir/src/common/tuklib_cpucores.c.o 
> CMakeFiles/vtklzma.dir/src/common/tuklib_physmem.c.o 
> CMakeFiles/vtklzma.dir/src/liblzma/check/check.c.o 
> CMakeFiles/vtklzma.dir/src/liblzma/check/crc32_fast.c.o 
> CMakeFiles/vtklzma.dir/src/liblzma/check/crc32_table.c.o 
> CMakeFiles/vtklzma.dir/src/liblzma/check/crc64_fast.c.o 
> CMakeFiles/vtklzma.dir/src/liblzma/check/crc64_table.c.o 
> CMakeFiles/vtklzma.dir/src/liblzma/check/sha256.c.o 
> CMakeFiles/vtklzma.dir/src/liblzma/common/alone_decoder.c.o 
> CMakeFiles/vtklzma.dir/src/liblzma/common/alone_encoder.c.o 
> CMakeFiles/vtklzma.dir/src/liblzma/common/auto_decoder.c.o CMakeFiles/vtk
 lzma.dir/src/liblzma/common/block_buffer_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/block_buffer_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/block_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/block_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/block_header_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/block_header_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/block_util.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/common.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/easy_buffer_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/easy_decoder_memusage.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/easy_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/easy_encoder_memusage.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/easy_preset.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/filter_buffer_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/filter_buffer_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/filter_common.c.
 o CMakeFiles/vtklzma.dir/src/liblzma/common/filter_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/filter_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/filter_flags_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/filter_flags_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/hardware_cputhreads.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/hardware_physmem.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/index.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/index_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/index_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/index_hash.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/outqueue.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/stream_buffer_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/stream_buffer_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/stream_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/stream_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/stream_encoder_mt.c.o CMak
 eFiles/vtklzma.dir/src/liblzma/common/stream_flags_common.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/stream_flags_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/stream_flags_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/vli_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/vli_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/common/vli_size.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/delta/delta_common.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/delta/delta_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/delta/delta_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/lzma/fastpos_table.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/lzma/lzma2_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/lzma/lzma2_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/lzma/lzma_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/lzma/lzma_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/lzma/lzma_encoder_optimum_fast.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/lzma/lzma_encoder_optimum_normal.c.o 
CMakeFiles/vtklzma.dir/s
 rc/liblzma/lzma/lzma_encoder_presets.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/lz/lz_decoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/lz/lz_encoder.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/lz/lz_encoder_mf.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/rangecoder/price_table.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/simple/arm.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/simple/armthumb.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/simple/ia64.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/simple/powerpc.c.o 
CMakeFiles/vtklzma.dir/src/liblzma/simple/simple_coder.c.o 

Re: [Paraview] CMake error from VTKConfig.cmake

[Utkarsh Ayachit]

Wow! cc-ing Rob. Rob, see below for what's ending up in VTMConfig for
ParaView 5.5. Any suggestions?

Mark, Christoph, for now, I'd recommend turning off PARAVIEW_USE_VTKM
cmake option in your build. It should not impact the default ParaView
capabilities by a whole lot.

Utkarsh

On Mon, Apr 16, 2018 at 3:34 PM, Mark Olesen  wrote:
> May be related:
> https://gitlab.kitware.com/paraview/paraview/issues/18116
>
>
> I can build 5.5.0 on opensuse leap 42.3, but do get *really* weird junk in
> the VTKmConfig.cmake file:
>
> # The VTKm version number
> set(VTKm_VERSION_MAJOR "4")
> set(VTKm_VERSION_MINOR "8")
> set(VTKm_VERSION_PATCH "5")
> set(VTKm_VERSION_FULL "4.8.5
> -- Check for working Fortran compiler: /usr/bin/gfortran
> -- Check for working Fortran compiler: /usr/bin/gfortran  -- works
> -- Detecting Fortran compiler ABI info
> -- Detecting Fortran compiler ABI info - done
> -- Checking whether /usr/bin/gfortran supports Fortran 90
> -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
> -- Configuring done
> -- Generating done
> -- Build files have been written to:
> /home/mol/test/build/ParaView-5.5.0/CMakeFiles/CheckFortran
> ")
> set(VTKm_VERSION "4.8")
>
>
> The version "4.8.5" look suspiciously like my gcc version.
> The rest of the information "Check for working Fortran" etc, really looks
> like misdirected output somewhere in the cmake files.
>
> /mark
>
>
>
> On 04/16/18 18:14, Utkarsh Ayachit wrote:
>>
>> Christoph,
>>
>> I am totally unfamiliar with OpenSUSE and my initial attempts to even
>> install a C++ compiler are going no where :). Mind making it easier
>> for me and just post the full error message that you're getting? Maybe
>> attaching the
>> /home/abuild/rpmbuild/BUILD/ParaView-v5.5.0/build/VTK/ThirdParty/vtkm/vtk-m/lib/cmake/paraview-5.5/vtkm/VTKmConfig.cmake
>> file will throw some light. Also is this failing when building the
>> Examples or just ther full ParaView build? I'd suggest disabling
>> examples, if that's the issue. The ParaView RPM should probably not
>> include examples any ways.
>>
>> Utkarsh
>>
>> On Sun, Apr 15, 2018 at 4:00 PM, Christoph Grüninger 
>> wrote:
>>>
>>> Hi Utkarsh,
>>> I used openSuse build service (OBS) which currently builds it on Leap
>>> 42.2 and Tumblewheed. If you want to give it a shot, try the package
>>> which I branched:
>>> home:mathletic:branches:science/paraview
>>>
>>> Bye
>>> Christoph
>>>
>>>
>>> Am 15.04.2018 um 16:40 schrieb Utkarsh Ayachit:

 Christoph,

 What openSuse version are you building on? I'll see if I can reproduce
 using the same version Docker image, if available. Will make it easier
 to track down.

 Utkarsh

 On Sun, Apr 15, 2018 at 7:08 AM, Christoph Grüninger
  wrote:
>
> Dear ParaView community,
> I tried to update openSuse's ParaView RPM. Unfortunately I get the
> following CMake error.
>
>> CMake Error at
>> build/VTK/ThirdParty/vtkm/vtk-m/lib/cmake/paraview-5.5/vtkm/VTKmConfig.cmake:289:
>>Parse error.  Function missing ending ")".  Instead found
>> unterminated
>>string with text ")
>>
>>  endif()
>>
>>endforeach()
>>
>>
>>
>>check_required_components(VTKm)
>>
>>".
>> Call Stack (most recent call first):
>>build/VTK/VTKConfig.cmake:92 (find_package)
>>CMake/ParaViewModuleTop.cmake:89 (include)
>>CMakeLists.txt:676 (include)
>>
>>
>> CMake Error at build/VTK/VTKConfig.cmake:92 (find_package):
>>find_package Error reading CMake code from
>>
>> "/home/abuild/rpmbuild/BUILD/ParaView-v5.5.0/build/VTK/ThirdParty/vtkm/vtk-m/lib/cmake/paraview-5.5/vtkm/VTKmConfig.cmake".
>> Call Stack (most recent call first):
>>CMake/ParaViewModuleTop.cmake:89 (include)
>>CMakeLists.txt:676 (include)
>
>
> Can someone please have a look whether it is a bug or a wrong
> configuration from openSuse? The CMake call is
>
> %cmake  -DPV_INSTALL_LIB_DIR:PATH=%{_lib}/%{name} \
>  -DVTK_INSTALL_INCLUDE_DIR:PATH=include/%{name} \
>  -DVTK_INSTALL_ARCHIVE_DIR:PATH=%{_lib}/%{name} \
>  -DVTK_INSTALL_LIBRARY_DIR:PATH=%{_lib}/%{name} \
>  -DVTK_INSTALL_DATA_DIR=share/%{name} \
>  -DVTK_INSTALL_DOC_DIR=share/doc/packages/%{name} \
>  -DCMAKE_CXX_COMPILER:FILEPATH=$CXX \
>  -DCMAKE_C_COMPILER:FILEPATH=$CC \
>  -DCMAKE_SKIP_RPATH:BOOL=OFF \
>  -DPARAVIEW_BUILD_QT_GUI:BOOL=ON \
>  -DPARAVIEW_BUILD_PLUGIN_SLACTools:BOOL=ON \
>  -DPARAVIEW_ENABLE_PYTHON:BOOL=ON \
>  -DVTK_WRAP_PYTHON:BOOL=ON \
>  -DVTK_WRAP_PYTHON_SIP:BOOL=ON \
>  -DVTK_OPENGL_HAS_OSMESA:BOOL=OFF \
>  -DVTK_USE_SYSTEM_EXPAT:BOOL=ON \
>  -DVTK_USE_SYSTEM_FREETYPE:BOOL=ON \

Re: [Paraview] CMake error from VTKConfig.cmake

[Mark Olesen]

May be related:
https://gitlab.kitware.com/paraview/paraview/issues/18116


I can build 5.5.0 on opensuse leap 42.3, but do get *really* weird junk 
in the VTKmConfig.cmake file:


# The VTKm version number
set(VTKm_VERSION_MAJOR "4")
set(VTKm_VERSION_MINOR "8")
set(VTKm_VERSION_PATCH "5")
set(VTKm_VERSION_FULL "4.8.5
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Configuring done
-- Generating done
-- Build files have been written to: 
/home/mol/test/build/ParaView-5.5.0/CMakeFiles/CheckFortran

")
set(VTKm_VERSION "4.8")


The version "4.8.5" look suspiciously like my gcc version.
The rest of the information "Check for working Fortran" etc, really 
looks like misdirected output somewhere in the cmake files.


/mark


On 04/16/18 18:14, Utkarsh Ayachit wrote:

Christoph,

I am totally unfamiliar with OpenSUSE and my initial attempts to even
install a C++ compiler are going no where :). Mind making it easier
for me and just post the full error message that you're getting? Maybe
attaching the 
/home/abuild/rpmbuild/BUILD/ParaView-v5.5.0/build/VTK/ThirdParty/vtkm/vtk-m/lib/cmake/paraview-5.5/vtkm/VTKmConfig.cmake
file will throw some light. Also is this failing when building the
Examples or just ther full ParaView build? I'd suggest disabling
examples, if that's the issue. The ParaView RPM should probably not
include examples any ways.

Utkarsh

On Sun, Apr 15, 2018 at 4:00 PM, Christoph Grüninger  wrote:

Hi Utkarsh,
I used openSuse build service (OBS) which currently builds it on Leap
42.2 and Tumblewheed. If you want to give it a shot, try the package
which I branched:
home:mathletic:branches:science/paraview

Bye
Christoph


Am 15.04.2018 um 16:40 schrieb Utkarsh Ayachit:

Christoph,

What openSuse version are you building on? I'll see if I can reproduce
using the same version Docker image, if available. Will make it easier
to track down.

Utkarsh

On Sun, Apr 15, 2018 at 7:08 AM, Christoph Grüninger  wrote:

Dear ParaView community,
I tried to update openSuse's ParaView RPM. Unfortunately I get the
following CMake error.


CMake Error at 
build/VTK/ThirdParty/vtkm/vtk-m/lib/cmake/paraview-5.5/vtkm/VTKmConfig.cmake:289:
   Parse error.  Function missing ending ")".  Instead found unterminated
   string with text ")

 endif()

   endforeach()



   check_required_components(VTKm)

   ".
Call Stack (most recent call first):
   build/VTK/VTKConfig.cmake:92 (find_package)
   CMake/ParaViewModuleTop.cmake:89 (include)
   CMakeLists.txt:676 (include)


CMake Error at build/VTK/VTKConfig.cmake:92 (find_package):
   find_package Error reading CMake code from
   
"/home/abuild/rpmbuild/BUILD/ParaView-v5.5.0/build/VTK/ThirdParty/vtkm/vtk-m/lib/cmake/paraview-5.5/vtkm/VTKmConfig.cmake".
Call Stack (most recent call first):
   CMake/ParaViewModuleTop.cmake:89 (include)
   CMakeLists.txt:676 (include)


Can someone please have a look whether it is a bug or a wrong
configuration from openSuse? The CMake call is

%cmake  -DPV_INSTALL_LIB_DIR:PATH=%{_lib}/%{name} \
 -DVTK_INSTALL_INCLUDE_DIR:PATH=include/%{name} \
 -DVTK_INSTALL_ARCHIVE_DIR:PATH=%{_lib}/%{name} \
 -DVTK_INSTALL_LIBRARY_DIR:PATH=%{_lib}/%{name} \
 -DVTK_INSTALL_DATA_DIR=share/%{name} \
 -DVTK_INSTALL_DOC_DIR=share/doc/packages/%{name} \
 -DCMAKE_CXX_COMPILER:FILEPATH=$CXX \
 -DCMAKE_C_COMPILER:FILEPATH=$CC \
 -DCMAKE_SKIP_RPATH:BOOL=OFF \
 -DPARAVIEW_BUILD_QT_GUI:BOOL=ON \
 -DPARAVIEW_BUILD_PLUGIN_SLACTools:BOOL=ON \
 -DPARAVIEW_ENABLE_PYTHON:BOOL=ON \
 -DVTK_WRAP_PYTHON:BOOL=ON \
 -DVTK_WRAP_PYTHON_SIP:BOOL=ON \
 -DVTK_OPENGL_HAS_OSMESA:BOOL=OFF \
 -DVTK_USE_SYSTEM_EXPAT:BOOL=ON \
 -DVTK_USE_SYSTEM_FREETYPE:BOOL=ON \
 -DVTK_USE_SYSTEM_JPEG:BOOL=ON \
 -DVTK_USE_SYSTEM_PNG:BOOL=ON \
 -DVTK_USE_SYSTEM_TIFF:BOOL=ON \
 -DVTK_USE_SYSTEM_ZLIB:BOOL=ON \
 -DVTK_USE_SYSTEM_ZOPE:BOOL=ON \
 -DVTK_USE_SYSTEM_TWISTED:BOOL=ON \
 -DVTK_USE_SYSTEM_GL2PS:BOOL=OFF \
 -DBUILD_DOCUMENTATION:BOOL=ON \
 -DBUILD_EXAMPLES:BOOL=ON \
 -DBUILD_TESTING:BOOL=OFF

Unrelated, but still irritating are dozens of CMake warnings like:


CMake Warning (dev) at 
build/VTK/ThirdParty/vtkm/vtk-m/lib/cmake/paraview-5.5/vtkm/VTKmConfig.cmake:278:
   Syntax Warning in cmake code at column 25

   Argument not separated from preceding token by whitespace.
Call Stack (most recent call first):
   build/VTK/VTKConfig.cmake:92 (find_package)
   CMake/ParaViewModuleTop.cmake:89 (include)
   CMakeLists.txt:676 (include)
This warning is for project developers.  Use 

Re: [Paraview] How find local maxima of a scalar field in a slice

[Caffagni, Andrea]

Dear David your point is interesting,
But unfortunately if you have a quasi-flat surface with some locals maxima, the 
gradient is around zero in a big surface of your domain.
For my problem seems very interesting the tool proposed by Jean:
https://topology-tool-kit.github.io/

The installation seems to be a bit tricky but I want install the software and 
try how it can work.

Responding to Mathieu:
I need a tool that can  run without my supervision and it can find the local 
maxima in an autonomous way.

As soon as possible I come back to you and share my experience.
For the moment I really thank you for your suggestions.

Best Regards,
Andrea


From: David E DeMarle [mailto:dave.dema...@kitware.com]
Sent: Monday, April 16, 2018 14:17
To: Mathieu Westphal
Cc: Caffagni, Andrea; paraview@public.kitware.com; Favre Jean
Subject: Re: [Paraview] How find local maxima of a scalar field in a slice

How about using the gradient (filter or python calculator expression) to take 
the derivative and find the points of inflection. Combine that with the 
techniques Mathieu and Jean suggested.

On Apr 16, 2018 7:53 AM, "Mathieu Westphal" 
> wrote:
Dear Andrea,
Both Jean's and my method will not work for your case. I'll admit that I missed 
the local part.
The easiest way would be to do it visually with scalar coloring and use "Hover 
Points" or "Hover Cells" to find the exact element you are looking for.
Best,

Mathieu Westphal

On Mon, Apr 16, 2018 at 1:25 PM, Caffagni, Andrea 
> wrote:
Dear Jean,
Thanks for your suggestions.
If I have understood correctly, your method can works only in the case in which 
I have only a maxima like this case:
https://upload.wikimedia.org/wikipedia/commons/c/ce/Gaussian_2d.png

But if I have to find the local maxima in this case:
https://www.mathworks.com/matlabcentral/mlc-downloads/downloads/submissions/27178/versions/6/previews/html/psPeaksExample.html
in which I have three different local max peaks, your method can works 
correctly?

Best regards,
Andrea


From: Favre Jean [mailto:jfa...@cscs.ch]
Sent: Monday, April 16, 2018 09:38
To: Caffagni, Andrea; 
paraview@public.kitware.com
Subject: RE: How find local maxima of a scalar field in a slice

use the Edit->Find Data menu

Select Points or Cells.
Select the "from" object (your slice's name)
Select the variable name
Select "is max"
Click on "Run Selection Query"
-
Jean/CSCS

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Re: [Paraview] Paraview SC17 Release OSPray = PV 5.5?

[David E DeMarle]

Hi Gabiel.

Click the gear icon or use the search field. "OSPRay Material" is flagged
as an advanced option. You will find a handful of example materials in that
list.

Note about the Value Indexed material. That one means "instead of using one
material for the whole object, use the color map to determine the material
for each block or cell"
To demonstrate:
open can.ex2
turn on ospray
turn on path tracer
set OSPRay Material to "Value Indexed"
open Color Map Editor.
change annotation for block 0 from "white" to "aluminum".




David E DeMarle
Kitware, Inc.
Principal Engineer
21 Corporate Drive
Clifton Park, NY 12065-8662
Phone: 518-881-4909

On Mon, Apr 16, 2018 at 2:47 PM, Axtmann Gabriel <
axtm...@iag.uni-stuttgart.de> wrote:

> Hi,
> I was able to get some nice OSPray renderings using the actual Paraview
> version 5.5. Anyway If I want to load some material json files for
> rendering  I cannot find the option to set the material in the properties
> menue. What I am doing wrong here?
>
> In short, I want to reproduce your SC17 example:
>
> https://blog.kitware.com/kitware-talks-sc17-and-releases-
> for-vtk-paraview-and-cmake/
>
>
> Thanks in advance
>
> Gabriel
>
> ___
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>
> Visit other Kitware open-source projects at http://www.kitware.com/opensou
> rce/opensource.html
>
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> http://paraview.org/Wiki/ParaView
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[Paraview] Paraview SC17 Release OSPray = PV 5.5?

[Axtmann Gabriel]

Hi,
I was able to get some nice OSPray renderings using the actual Paraview 
version 5.5. Anyway If I want to load some material json files for 
rendering  I cannot find the option to set the material in the 
properties menue. What I am doing wrong here?


In short, I want to reproduce your SC17 example:

https://blog.kitware.com/kitware-talks-sc17-and-releases-for-vtk-paraview-and-cmake/


Thanks in advance

Gabriel

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Re: [Paraview] How find local maxima of a scalar field in a slice

[David E DeMarle]

How about using the gradient (filter or python calculator expression) to
take the derivative and find the points of inflection. Combine that with
the techniques Mathieu and Jean suggested.

On Apr 16, 2018 7:53 AM, "Mathieu Westphal" 
wrote:

Dear Andrea,

Both Jean's and my method will not work for your case. I'll admit that I
missed the local part.

The easiest way would be to do it visually with scalar coloring and use
"Hover Points" or "Hover Cells" to find the exact element you are looking
for.

Best,

Mathieu Westphal

On Mon, Apr 16, 2018 at 1:25 PM, Caffagni, Andrea <
andrea.caffa...@ferrari.com> wrote:

> Dear Jean,
>
> Thanks for your suggestions.
>
> If I have understood correctly, your method can works only in the case in
> which I have only a maxima like this case:
>
> https://upload.wikimedia.org/wikipedia/commons/c/ce/Gaussian_2d.png
>
>
>
> But if I have to find the local maxima in this case:
>
>
> https://www.mathworks.com/matlabcentral/mlc-downloads/downloads/submissions/27178/versions/6/previews/html/psPeaksExample.html
>
> in which I have three different local max peaks, your method can works
> correctly?
>
>
>
> Best regards,
>
> Andrea
>
>
>
>
>
> *From:* Favre Jean [mailto:jfa...@cscs.ch]
> *Sent:* Monday, April 16, 2018 09:38
> *To:* Caffagni, Andrea; paraview@public.kitware.com
> *Subject:* RE: How find local maxima of a scalar field in a slice
>
>
>
> use the Edit->Find Data menu
>
> Select Points or Cells.
> Select the "from" object (your slice's name)
>
> Select the variable name
> Select "is max"
> Click on "Run Selection Query"
>
> -
> Jean/CSCS
>
>
> _
>
>
>
> Questo messaggio è da intendersi esclusivamente ad uso del destinatario e
> può contenere informazioni che sono di natura privilegiata, confidenziale o
> non divulgabile secondo le leggi vigenti. Se il lettore del presente
> messaggio non è il destinatario designato, o il dipendente/agente
> responsabile per la consegna del messaggio al destinatario designato, si
> informa che ogni disseminazione, distribuzione o copiatura di questa
> comunicazione è vietata anche ai sensi della normativa vigente in materia
> di protezione dei dati personali. Se avete ricevuto questo messaggio per
> errore, vi preghiamo di notificarcelo immediatamente a mezzo e-mail di
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Re: [Paraview] How find local maxima of a scalar field in a slice

[Mathieu Westphal]

Dear Andrea,

Both Jean's and my method will not work for your case. I'll admit that I
missed the local part.

The easiest way would be to do it visually with scalar coloring and use
"Hover Points" or "Hover Cells" to find the exact element you are looking
for.

Best,

Mathieu Westphal

On Mon, Apr 16, 2018 at 1:25 PM, Caffagni, Andrea <
andrea.caffa...@ferrari.com> wrote:

> Dear Jean,
>
> Thanks for your suggestions.
>
> If I have understood correctly, your method can works only in the case in
> which I have only a maxima like this case:
>
> https://upload.wikimedia.org/wikipedia/commons/c/ce/Gaussian_2d.png
>
>
>
> But if I have to find the local maxima in this case:
>
> https://www.mathworks.com/matlabcentral/mlc-downloads/
> downloads/submissions/27178/versions/6/previews/html/psPeaksExample.html
>
> in which I have three different local max peaks, your method can works
> correctly?
>
>
>
> Best regards,
>
> Andrea
>
>
>
>
>
> *From:* Favre Jean [mailto:jfa...@cscs.ch]
> *Sent:* Monday, April 16, 2018 09:38
> *To:* Caffagni, Andrea; paraview@public.kitware.com
> *Subject:* RE: How find local maxima of a scalar field in a slice
>
>
>
> use the Edit->Find Data menu
>
> Select Points or Cells.
> Select the "from" object (your slice's name)
>
> Select the variable name
> Select "is max"
> Click on "Run Selection Query"
>
> -
> Jean/CSCS
>
> 
> _
>
>
>
> Questo messaggio è da intendersi esclusivamente ad uso del destinatario e
> può contenere informazioni che sono di natura privilegiata, confidenziale o
> non divulgabile secondo le leggi vigenti. Se il lettore del presente
> messaggio non è il destinatario designato, o il dipendente/agente
> responsabile per la consegna del messaggio al destinatario designato, si
> informa che ogni disseminazione, distribuzione o copiatura di questa
> comunicazione è vietata anche ai sensi della normativa vigente in materia
> di protezione dei dati personali. Se avete ricevuto questo messaggio per
> errore, vi preghiamo di notificarcelo immediatamente a mezzo e-mail di
> risposta e successivamente di procedere alla cancellazione di questa e-mail
> e relativi allegati dal vostro sistema.
>
> 
> _
>
>
>
> This message is intended only for the use of the addressee and may contain
> information that is privileged, confidential and exempt from disclosure
> under applicable law. If the reader of this message is not the intended
> recipient, or the employee or agent responsible for delivering the message
> to the intended recipient, you are hereby notified that any dissemination,
> distribution or copying of this communication is prohibited under the
> applicable data protection law. If you have received this e-mail by
> mistake, please notify us immediately by return e-mail and delete this
> e-mail and all attachments from your system.
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>
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> 
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Re: [Paraview] How find local maxima of a scalar field in a slice

[Caffagni, Andrea]

Dear Jean,
Thanks for your suggestions.
If I have understood correctly, your method can works only in the case in which 
I have only a maxima like this case:
https://upload.wikimedia.org/wikipedia/commons/c/ce/Gaussian_2d.png

But if I have to find the local maxima in this case:
https://www.mathworks.com/matlabcentral/mlc-downloads/downloads/submissions/27178/versions/6/previews/html/psPeaksExample.html
in which I have three different local max peaks, your method can works 
correctly?

Best regards,
Andrea


From: Favre Jean [mailto:jfa...@cscs.ch]
Sent: Monday, April 16, 2018 09:38
To: Caffagni, Andrea; paraview@public.kitware.com
Subject: RE: How find local maxima of a scalar field in a slice

use the Edit->Find Data menu

Select Points or Cells.
Select the "from" object (your slice's name)
Select the variable name
Select "is max"
Click on "Run Selection Query"
-
Jean/CSCS

_



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information that is privileged, confidential and exempt from disclosure under 
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the employee or agent responsible for delivering the message to the intended 
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Re: [Paraview] How find local maxima of a scalar field in a slice

[Caffagni, Andrea]

Dear Mathieu,
Thanks for your suggestions.
If I have understood correctly, your method can works only in the case in which 
I have only a maxima like this case:
https://upload.wikimedia.org/wikipedia/commons/c/ce/Gaussian_2d.png

But if I have to find the local maxima in this case:
https://www.mathworks.com/matlabcentral/mlc-downloads/downloads/submissions/27178/versions/6/previews/html/psPeaksExample.html
in which I have three different local max peaks, your method can works 
correctly?

Best regards,
Andrea

From: Mathieu Westphal [mailto:mathieu.westp...@kitware.com]
Sent: Monday, April 16, 2018 08:46
To: Caffagni, Andrea
Cc: paraview@public.kitware.com
Subject: Re: [Paraview] How find local maxima of a scalar field in a slice

Dear Andrea
The range maximum value can be read directly in the information tab of your 
data, in the "Data Arrays" section.
Or you can directly create a new "Spreadsheet view", show your data in it and 
sort the data by clicking on your scalars array header, you will know the value 
et the localisation.
Best,


Mathieu Westphal

On Sun, Apr 15, 2018 at 7:43 PM, Caffagni, Andrea 
> wrote:
Dear all,
I need to find the local maxima of a scalar field on a slice in Paraview.
I need both the value of my scalar variable and also the tridimensional 
position of the local maxima.
Searching on the blog, I have found a possible vtk function:
https://www.vtk.org/doc/release/5.0/html/a01562.html

Someone of you know some simpler and faster way to solve my problem (maybe 
using numpy library)?

I thank you in advance for all suggestions,
Andrea

_



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consegna del messaggio al destinatario designato, si informa che ogni 
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protection law. If you have received this e-mail by mistake, please notify us 
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[Paraview] Control over camera movement for animations

[Rupert Gladstone]

Hi all, I am making progress learning to make animations with Paraview.
The animation capabilities in Paraview are very good.  There appear to be a
couple of limitations, but I am not sure whether these are limitations in
my understanding or in Paraview itself.  Details below.  Thanks!

When I use the "follow path" option it does not seem to be possible to
adjust the "up direction" within a path.  I can have a different "up
direction" in subsequent paths within one animation, but the jump between
up directions is abrupt.  Are there any plans to allow up direction to
change as a path is followed?  Is there a way to smooth the jump between
subsequent paths with a different up direction?

With the "follow path" option there doesn't seem to be any way of using the
current camera view like in the "Interpolate camera locations" option.  Is
this possible?  Is it likely to be implemented in the future?  Even if the
"up direction" information for the current camera view is lost I would
still find such a functionality useful.

If I want a new path to start or finish at the same place as a previous
path then I have to open the window for the previous path, copy one of the
coords, close the window, open the window for the new path, paste the
coord, then repeat for all other coords.  This is a lot of
point-and-clicking.  Is there a way to short cut this?  For example having
2 path windows open concurrently would be a help, or being able to create a
new path as a copy of a previous path would be even better.

When I use "Interpolate camera locations" there seems to be quite a long
slow overshoot.  I guess Paraview is doing some kind of spline
interpolation.  Is there a way to stop it doing this?  Simple linear
interpolation between locations would be just fine for my purposes.  My
current approach to minimise this overshoot is to copy my target location
several times in close temporal proximity.  e.g. if I want to move from
position A at the start to position B after 10 seconds, then stay at
position B, my current approach is to repeat position B at 10, 10.5 and 11
seconds.  This isn't perfect but it is a manageable workaround.

I REALLY like the ability to use the current camera view when setting up
camera locations for interpolation.

BTW I am making animations for a public lecture on Antarctic ice sheet
modelling.  If you want to see what I come up with let me know, I'll be
happy to share.

Regards,
Rupert


---
Rupert Gladstone, PhD
Antarctic Ice Sheet researcher, University of Lapland
https://groups.google.com/d/forum/fisoc
https://lacris.ulapland.fi/en/persons/rupert-gladstone(
21a10f7f-3ea9-4c06-b9a4-320eb4ca8e29).html
https://scholar.google.com.au/citations?user=FNgAsPkJ
http://www.researcherid.com/rid/C-1086-2013

---
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Re: [Paraview] How find local maxima of a scalar field in a slice

[Favre Jean]

use the Edit->Find Data menu

Select Points or Cells.
Select the "from" object (your slice's name)
Select the variable name
Select "is max"
Click on "Run Selection Query"

-
Jean/CSCS
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Re: [Paraview] How find local maxima of a scalar field in a slice

[Mathieu Westphal]

Dear Andrea

The range maximum value can be read directly in the information tab of your
data, in the "Data Arrays" section.
Or you can directly create a new "Spreadsheet view", show your data in it
and sort the data by clicking on your scalars array header, you will know
the value et the localisation.

Best,



Mathieu Westphal

On Sun, Apr 15, 2018 at 7:43 PM, Caffagni, Andrea <
andrea.caffa...@ferrari.com> wrote:

> Dear all,
>
> I need to find the local maxima of a scalar field on a slice in Paraview.
>
> I need both the value of my scalar variable and also the tridimensional
> position of the local maxima.
>
> Searching on the blog, I have found a possible vtk function:
>
> https://www.vtk.org/doc/release/5.0/html/a01562.html
>
>
>
> Someone of you know some simpler and faster way to solve my problem (maybe
> using numpy library)?
>
>
>
> I thank you in advance for all suggestions,
>
> Andrea
>
> 
> _
>
>
>
> Questo messaggio è da intendersi esclusivamente ad uso del destinatario e
> può contenere informazioni che sono di natura privilegiata, confidenziale o
> non divulgabile secondo le leggi vigenti. Se il lettore del presente
> messaggio non è il destinatario designato, o il dipendente/agente
> responsabile per la consegna del messaggio al destinatario designato, si
> informa che ogni disseminazione, distribuzione o copiatura di questa
> comunicazione è vietata anche ai sensi della normativa vigente in materia
> di protezione dei dati personali. Se avete ricevuto questo messaggio per
> errore, vi preghiamo di notificarcelo immediatamente a mezzo e-mail di
> risposta e successivamente di procedere alla cancellazione di questa e-mail
> e relativi allegati dal vostro sistema.
>
> 
> _
>
>
>
> This message is intended only for the use of the addressee and may contain
> information that is privileged, confidential and exempt from disclosure
> under applicable law. If the reader of this message is not the intended
> recipient, or the employee or agent responsible for delivering the message
> to the intended recipient, you are hereby notified that any dissemination,
> distribution or copying of this communication is prohibited under the
> applicable data protection law. If you have received this e-mail by
> mistake, please notify us immediately by return e-mail and delete this
> e-mail and all attachments from your system.
>
>
>
> 
> _
>
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Re: [Paraview] Reading binaries on PC and Mac

[Mathieu Westphal]

Dear Randy,

Reader code is not platform specific, so it should not be a problem.

As a side note, we consider ParaView to be fully cross-platform, so any
missing/broken feature on a specific platform should be considered a bug.

Best,

Mathieu Westphal

On Sun, Apr 15, 2018 at 10:04 PM, Randy Hessel  wrote:

> Dear All –
>
> I have a binary data set in EnSight case gold format and it reads into
> ParaView on my windows PC just fine. Does anyone know if the same data set
> will work when using ParaView  on a Mac that is running 10.12 or 10.13?
>
> Thanks, Randy
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