Re: [petsc-dev] Fwd: [mumps-users] MUMPS MPI (5.2.1) does not compile

2019-07-23 Thread Balay, Satish via petsc-dev 
Ok - I think the current issue is about MUMPS building shared
libraries. Current mumps release lacks this feature.

And these patches enable building mumps as shared library - but the
patch is linux specific - and not portable.

It would be great if this can be made portable.

Currently when mumps is built via petsc using --download-mumps - its
build as static - but with -fPIC [or equivalent] - so it gets sucked
into libpetsc.so. [the same with scalapack].

Satish

On Mon, 22 Jul 2019, Antonio Trande via petsc-dev wrote:

> On 22/07/19 20:28, Pierre Jolivet via petsc-dev wrote:
> > We are having trouble compiling git.mumps with similar errors (using
> > ifort 2017, yikes).
> > Could the forwarded patches be applied to petsc/pkg-mumps, please?
> > 
> > Thanks in advance (and sorry if this should be handled @petsc-maint),
> > Pierre
> 
> I have just used 1 Make job (make -j1) to complete the compilation.
> Anyway, MUMPS-5.2.1 has been just now pushed on Fedora repositories and
> compiled fine on Fedora 31 (and CentOS7):
> https://src.fedoraproject.org/rpms/MUMPS/tree/master
> 
> 
>

Re: [petsc-dev] Fwd: [mumps-users] MUMPS MPI (5.2.1) does not compile

2019-07-22 Thread Antonio Trande via petsc-dev 
On 22/07/19 20:28, Pierre Jolivet via petsc-dev wrote:
> We are having trouble compiling git.mumps with similar errors (using
> ifort 2017, yikes).
> Could the forwarded patches be applied to petsc/pkg-mumps, please?
> 
> Thanks in advance (and sorry if this should be handled @petsc-maint),
> Pierre

I have just used 1 Make job (make -j1) to complete the compilation.
Anyway, MUMPS-5.2.1 has been just now pushed on Fedora repositories and
compiled fine on Fedora 31 (and CentOS7):
https://src.fedoraproject.org/rpms/MUMPS/tree/master


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Fedora Project
mailto 'sagitter at fedoraproject dot org'
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Re: [petsc-dev] Fwd: [mumps-users] MUMPS MPI (5.2.1) does not compile

2019-07-22 Thread Pierre Jolivet via petsc-dev 
Ah, shoot, I misunderstood the mail from the MUMPS ML, which states that there 
is a FTBS, but fixes something else…
I just tried myself and it seems OK as well.
The only difference I see with my user's ./configure and the MUMPS ML vs. 
Satish and me is that we are using MPICH (IMPI in my case) and they are using 
OpenMPI.

I’ll ask for the user to send its configure.log to petsc-maint.

Thanks and sorry for the trouble,
Pierre

> On 22 Jul 2019, at 9:06 PM, Balay, Satish  wrote:
> 
> And the error below is with cmumps_save_restore.F - but I don't see fixes to 
> this file in the patches.
> 
> So I tried a build with intel-17 - and that worked fine for me.
> 
> balay@es^/sandbox/balay/petsc(master=) $ ifort --version
> ifort (IFORT) 17.0.2 20170213
> Copyright (C) 1985-2017 Intel Corporation.  All rights reserved.
> balay@es^/sandbox/balay/petsc(master=) $ ./configure CC=icc FC=ifort CXX=icpc 
> --download-mpich --download-scalapack --download-mumps 
> --with-blaslapack-dir=$MKL_HOME
> 
> Attaching the corresponding configure.log
> 
> Satish
> 
> On Mon, 22 Jul 2019, Smith, Barry F. via petsc-dev wrote:
> 
>> 
>>  Pierre,
>> 
>>   I see four patches here. 
>> 
>> 1) for examples
>> 2) for shared library support (but only for Linux) (two files for MUMPS 
>> and PORD) We can't use this unless also supports Mac etc
>> 3) MUMPS-Makefile.par.inc  What is this for?
>> 
>>  How does any of them resolve the problem with ifort failing to compile?
>> 
>>  Barry
>> 
>> 
>>> On Jul 22, 2019, at 1:28 PM, Pierre Jolivet via petsc-dev 
>>>  wrote:
>>> 
>>> We are having trouble compiling git.mumps with similar errors (using ifort 
>>> 2017, yikes).
>>> Could the forwarded patches be applied to petsc/pkg-mumps, please?
>>> 
>>> Thanks in advance (and sorry if this should be handled @petsc-maint),
>>> Pierre
>>> 
 Begin forwarded message:
 
 From: "Antonio Trande" (anto.tra...@gmail.com via mumps-users Mailing 
 List) 
 Subject: [mumps-users] MUMPS MPI (5.2.1) does not compile
 Date: 29 June 2019 at 5:56:28 PM CEST
 To: "mumps-us...@listes.ens-lyon.fr" 
 Reply-To: mumps-us...@listes.ens-lyon.fr
 
 
 Hi all.
 
 MUMPS-5.2.1 is not compiling on Fedora 30 because of this error:
 
 /usr/lib64/openmpi/bin/mpif77 -O2 -g -pipe -Wall -Werror=format-security
 -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions
 -fstack-protector-strong -grecord-gcc-switches
 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1
 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic
 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection
 -Dscotch -Dmetis -Dptscotch -pthread -I/usr/lib64/gfortran/modules
 -Dintel_ -Wno-unused-dummy-argument -Wno-maybe-uninitialized
 -I/usr/include/openmpi-x86_64 -I/usr/include/openblas
 -I/usr/include/openmpi-x86_64 -Dpord -I. -I../include -fPIC -c
 cmumps_save_restore.F -o cmumps_save_restore.o
 cmumps_save_restore.F:8105:50:
 
 8105 |IF(associated(id%MPITOOMP_PROCS_MAP)) THEN
 |  1
 Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'
 structure
 cmumps_save_restore.F:8108:49:
 
 8108 |  & size(id%MPITOOMP_PROCS_MAP,1)*SIZE_INT
 | 1
 Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'
 structure
 cmumps_save_restore.F:8113:72:
 
 8113 | elseif(trim(mode).EQ."save") then
 |
  1
 Error: Unexpected ELSE IF statement at (1)
 cmumps_save_restore.F:8114:50:
 
 8114 |IF(associated(id%MPITOOMP_PROCS_MAP)) THEN
 |  1
 Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'
 structure
 cmumps_save_restore.F:8115:67:
 
 8115 |   write(unit,iostat=err)
 size(id%MPITOOMP_PROCS_MAP,1)
 |   1
 Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'
 structure
 cmumps_save_restore.F:8124:62:
 
 8124 |   write(unit,iostat=err) id%MPITOOMP_PROCS_MAP
 |  1
 Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'
 structure
 cmumps_save_restore.F:8125:72:
 
 8125 |ELSE
 |
  1
 Error: Unexpected ELSE statement at (1)
 cmumps_save_restore.F:8136:18:
 
 8136 |ENDIF
 |  1
 Error: Expecting END SELECT statement at (1)
 cmumps_save_restore.F:8145:72:
 
 8145 | elseif(trim(mode).EQ."restore") then
 |
  1
 Error: Unexpected ELSE IF statement at

Re: [petsc-dev] Fwd: [mumps-users] MUMPS MPI (5.2.1) does not compile

2019-07-22 Thread Smith, Barry F. via petsc-dev 


  Pierre,

   I see four patches here. 

1) for examples
2) for shared library support (but only for Linux) (two files for MUMPS and 
PORD) We can't use this unless also supports Mac etc
3) MUMPS-Makefile.par.inc  What is this for?

  How does any of them resolve the problem with ifort failing to compile?

  Barry


> On Jul 22, 2019, at 1:28 PM, Pierre Jolivet via petsc-dev 
>  wrote:
> 
> We are having trouble compiling git.mumps with similar errors (using ifort 
> 2017, yikes).
> Could the forwarded patches be applied to petsc/pkg-mumps, please?
> 
> Thanks in advance (and sorry if this should be handled @petsc-maint),
> Pierre
> 
>> Begin forwarded message:
>> 
>> From: "Antonio Trande" (anto.tra...@gmail.com via mumps-users Mailing List) 
>> 
>> Subject: [mumps-users] MUMPS MPI (5.2.1) does not compile
>> Date: 29 June 2019 at 5:56:28 PM CEST
>> To: "mumps-us...@listes.ens-lyon.fr" 
>> Reply-To: mumps-us...@listes.ens-lyon.fr
>> 
>> 
>> Hi all.
>> 
>> MUMPS-5.2.1 is not compiling on Fedora 30 because of this error:
>> 
>> /usr/lib64/openmpi/bin/mpif77 -O2 -g -pipe -Wall -Werror=format-security
>> -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions
>> -fstack-protector-strong -grecord-gcc-switches
>> -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1
>> -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic
>> -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection
>> -Dscotch -Dmetis -Dptscotch -pthread -I/usr/lib64/gfortran/modules
>> -Dintel_ -Wno-unused-dummy-argument -Wno-maybe-uninitialized
>> -I/usr/include/openmpi-x86_64 -I/usr/include/openblas
>> -I/usr/include/openmpi-x86_64 -Dpord -I. -I../include -fPIC -c
>> cmumps_save_restore.F -o cmumps_save_restore.o
>> cmumps_save_restore.F:8105:50:
>> 
>> 8105 |IF(associated(id%MPITOOMP_PROCS_MAP)) THEN
>>  |  1
>> Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'
>> structure
>> cmumps_save_restore.F:8108:49:
>> 
>> 8108 |  & size(id%MPITOOMP_PROCS_MAP,1)*SIZE_INT
>>  | 1
>> Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'
>> structure
>> cmumps_save_restore.F:8113:72:
>> 
>> 8113 | elseif(trim(mode).EQ."save") then
>>  |
>>   1
>> Error: Unexpected ELSE IF statement at (1)
>> cmumps_save_restore.F:8114:50:
>> 
>> 8114 |IF(associated(id%MPITOOMP_PROCS_MAP)) THEN
>>  |  1
>> Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'
>> structure
>> cmumps_save_restore.F:8115:67:
>> 
>> 8115 |   write(unit,iostat=err)
>> size(id%MPITOOMP_PROCS_MAP,1)
>>  |   1
>> Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'
>> structure
>> cmumps_save_restore.F:8124:62:
>> 
>> 8124 |   write(unit,iostat=err) id%MPITOOMP_PROCS_MAP
>>  |  1
>> Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'
>> structure
>> cmumps_save_restore.F:8125:72:
>> 
>> 8125 |ELSE
>>  |
>>   1
>> Error: Unexpected ELSE statement at (1)
>> cmumps_save_restore.F:8136:18:
>> 
>> 8136 |ENDIF
>>  |  1
>> Error: Expecting END SELECT statement at (1)
>> cmumps_save_restore.F:8145:72:
>> 
>> 8145 | elseif(trim(mode).EQ."restore") then
>>  |
>>   1
>> Error: Unexpected ELSE IF statement at (1)
>> cmumps_save_restore.F:8146:44:
>> 
>> 8146 |nullify(id%MPITOOMP_PROCS_MAP)
>>  |1
>> Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'
>> structure
>> cmumps_save_restore.F:8163:48:
>> 
>> 8163 |   allocate(id%MPITOOMP_PROCS_MAP(size_array1),
>>  |1
>> Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'
>> structure
>> cmumps_save_restore.F:8171:61:
>> 
>> 8171 |   read(unit,iostat=err) id%MPITOOMP_PROCS_MAP
>>  | 1
>> Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'
>> structure
>> cmumps_save_restore.F:8184:15:
>> 
>> 8184 | endif
>>  |   1
>> Error: Expecting END SELECT statement at (1)
>> cmumps_save_restore.F:8188:64:
>> 
>> 8188 |SIZE_VARIABLES(i1)=SIZE_INT*size(id%METIS_OPTIONS,1)
>>  |1
>> Error: 'metis_options' at (1) is not a member of the 'cmumps_struc'
>> structure
>> cmumps_save_restore.F:8190:54:
>> 
>> 8190 |write(unit,iostat=err) id%METIS_OPTIONS
>>  |

[petsc-dev] Fwd: [mumps-users] MUMPS MPI (5.2.1) does not compile

2019-07-22 Thread Pierre Jolivet via petsc-dev 
We are having trouble compiling git.mumps with similar errors (using ifort 2017, yikes).Could the forwarded patches be applied to petsc/pkg-mumps, please?Thanks in advance (and sorry if this should be handled @petsc-maint),PierreBegin forwarded message:From: "Antonio Trande" (anto.tra...@gmail.com via mumps-users Mailing List) Subject: [mumps-users] MUMPS MPI (5.2.1) does not compileDate: 29 June 2019 at 5:56:28 PM CESTTo: "mumps-us...@listes.ens-lyon.fr" Reply-To: mumps-us...@listes.ens-lyon.fr	Hi all.MUMPS-5.2.1 is not compiling on Fedora 30 because of this error:/usr/lib64/openmpi/bin/mpif77 -O2 -g -pipe -Wall -Werror=format-security-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions-fstack-protector-strong -grecord-gcc-switches-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection-Dscotch -Dmetis -Dptscotch -pthread -I/usr/lib64/gfortran/modules-Dintel_ -Wno-unused-dummy-argument -Wno-maybe-uninitialized-I/usr/include/openmpi-x86_64 -I/usr/include/openblas-I/usr/include/openmpi-x86_64 -Dpord -I. -I../include -fPIC -ccmumps_save_restore.F -o cmumps_save_restore.ocmumps_save_restore.F:8105:50: 8105 |    IF(associated(id%MPITOOMP_PROCS_MAP)) THEN  |  1Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'structurecmumps_save_restore.F:8108:49: 8108 |  & size(id%MPITOOMP_PROCS_MAP,1)*SIZE_INT  | 1Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'structurecmumps_save_restore.F:8113:72: 8113 | elseif(trim(mode).EQ."save") then  |   1Error: Unexpected ELSE IF statement at (1)cmumps_save_restore.F:8114:50: 8114 |    IF(associated(id%MPITOOMP_PROCS_MAP)) THEN  |  1Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'structurecmumps_save_restore.F:8115:67: 8115 |   write(unit,iostat=err)size(id%MPITOOMP_PROCS_MAP,1)  |   1Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'structurecmumps_save_restore.F:8124:62: 8124 |   write(unit,iostat=err) id%MPITOOMP_PROCS_MAP  |  1Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'structurecmumps_save_restore.F:8125:72: 8125 |    ELSE  |   1Error: Unexpected ELSE statement at (1)cmumps_save_restore.F:8136:18: 8136 |    ENDIF  |  1Error: Expecting END SELECT statement at (1)cmumps_save_restore.F:8145:72: 8145 | elseif(trim(mode).EQ."restore") then  |   1Error: Unexpected ELSE IF statement at (1)cmumps_save_restore.F:8146:44: 8146 |    nullify(id%MPITOOMP_PROCS_MAP)  |    1Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'structurecmumps_save_restore.F:8163:48: 8163 |   allocate(id%MPITOOMP_PROCS_MAP(size_array1),  |    1Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'structurecmumps_save_restore.F:8171:61: 8171 |   read(unit,iostat=err) id%MPITOOMP_PROCS_MAP  | 1Error: 'mpitoomp_procs_map' at (1) is not a member of the 'cmumps_struc'structurecmumps_save_restore.F:8184:15: 8184 | endif  |   1Error: Expecting END SELECT statement at (1)cmumps_save_restore.F:8188:64: 8188 |    SIZE_VARIABLES(i1)=SIZE_INT*size(id%METIS_OPTIONS,1)  |    1Error: 'metis_options' at (1) is not a member of the 'cmumps_struc'structurecmumps_save_restore.F:8190:54: 8190 |    write(unit,iostat=err) id%METIS_OPTIONS  |  1Error: 'metis_options' at (1) is not a member of the 'cmumps_struc'structurecmumps_save_restore.F:8200:64: 8200 |    SIZE_VARIABLES(i1)=SIZE_INT*size(id%METIS_OPTIONS,1)  |    1Error: 'metis_options' at (1) is not a member of the 'cmumps_struc'structurecmumps_save_restore.F:8201:53: 8201 |    read(unit,iostat=err) id%METIS_OPTIONS  | 1Error: 'metis_options' at (1) is not a member of the 'cmumps_struc'structuremake[3]: *** [Makefile:396: cmumps_save_restore.o] Error 1I'm patching MUMPS for compiling shared libraries for Fedora. I'mattaching the patch used.-- ---Antonio TrandeFedora