Re: [petsc-users] Using MUMPS and (PT)SCOTCH with PETSC
Set a new value for PETSC_ARCH
Obtain the Scotch 5.1.12b tar ball. Used ./configure
—download-ptscotch=nameoftarball.tar.gz —download-mumps —download-scalapack etc
It will use the provided tar ball instead of downloading 6.0.0 Send errors
to petsc-ma...@mcs.anl.gov
Barry
On Sep 5, 2014, at 10:06 AM, Evan Um eva...@gmail.com wrote:
Dear PETSC users,
I tried to use SCOTCH 5.1.12b in my PETSC codes since MUMPS has compatibility
issues with the latest SCOTCH library.
I was told that SCOTCH/6.0.0 that comes with PETSC/3.5.0 is automatically
downloaded and installed. Is it still possible to use old SCOTCH library
5.1.2b in PETSC? As mentioned in MUMPS's FAQ, MUMPS has compatibility issues
with the latest SCOTCH. MUMPS developers suggest that MUMPS should work with
SCOTCH 5.1.12b. In advance, thanks for your kind comments.
Regards,
Evan
Errors from MUMPS with SCOTCH 6.0.0 and PETSC 3.5.0:
(5): ERROR: stratParserParse: invalid method parameter name type, before
h,vert=100,low=h{pass=10},asc=b{width=3,bnd=f{bal=0.2},org=h{pass=10}f{bal=0.2},ole=s,ose=s,osq=n{sep=/(vert120)?m{type=h,vert=100,low=h{pass=10},asc=b{width=3,bnd=f{bal=0.2},org=h{pass=10}f{bal=0.2}}};,ole=f{cmin=15,cmax=10,frat=0.0},ose=g}}
Re: [petsc-users] Using MUMPS and (PT)SCOTCH with PETSC
Hi Barry, Thanks for the suggestion. I downloaded the scotch tar ball in the petsc source directory, and set up the configure flag as suggested, but I got the following error: make[1]: Leaving directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotchmetis'make: *** No rule to make target `ptesmumps'. Stop. *** === Trying to download file://scotch_5.1.12b.tar.gz for PTSCOTCH === === Compiling PTScotch; this may take several minutes === *** UNABLE to CONFIGURE with GIVEN OPTIONS(see configure.log for details): --- Error running make on PTScotch: Could not execute cd /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src make clean ptesmumps: /bin/mkdir -p ../bin /bin/mkdir -p ../include /bin/mkdir -p ../lib (cd libscotch ; make clean) make[1]: Entering directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotch' rm -f *~ *.o lib*.a parser_yy.c parser_ly.h parser_ll.c *scotch.h *scotchf.h y.output dummysizes make[1]: Leaving directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotch' (cd scotch ; make clean) make[1]: Entering directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/scotch' rm -f *~ *.o acpl amk_ccc amk_fft2 amk_grf amk_hy amk_m2 amk_p2 atst gbase gcv *ggath *gmap gmk_hy gmk_m2 gmk_m3 gmk_msh gmk_ub2 gmtst *gord gotst gout *gpart *gscat *gtst mcv mmk_m2 mmk_m3 mord mtst make[1]: Leaving directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/scotch' (cd libscotchmetis ; make clean) make[1]: Entering directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotchmetis' rm -f *~ *.o lib*.a make[1]: Leaving directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotchmetis'make: *** No rule to make target `ptesmumps'. Stop. *** makefile:15: arch-linux2-c-debug/conf/petscvariables: No such file or directory /clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/variables:117: /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscvariables: No such file or directory /clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/rules:993: /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules: No such file or directory make: *** No rule to make target `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules'. Stop. makefile:15: arch-linux2-c-debug/conf/petscvariables: No such file or directory /clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/variables:117: /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscvariables: No such file or directory /clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/rules:993: /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules: No such file or directory make: *** No rule to make target `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules'. Stop. makefile:15: conf/petscvariables: No such file or directory make: *** No rule to make target `conf/petscvariables'. Stop. Do you know what am I missing? Thanks, Kai On Fri, Sep 5, 2014 at 11:25 AM, Barry Smith bsm...@mcs.anl.gov wrote: Set a new value for PETSC_ARCH Obtain the Scotch 5.1.12b tar ball. Used ./configure —download-ptscotch=nameoftarball.tar.gz —download-mumps —download-scalapack etc It will use the provided tar ball instead of downloading 6.0.0 Send errors to petsc-ma...@mcs.anl.gov Barry On Sep 5, 2014, at 10:06 AM, Evan Um eva...@gmail.com wrote: Dear PETSC users, I tried to use SCOTCH 5.1.12b in my PETSC codes since MUMPS has compatibility issues with the latest SCOTCH library. I was told that SCOTCH/6.0.0 that comes with PETSC/3.5.0 is automatically downloaded and installed. Is it still possible to use old SCOTCH library 5.1.2b in PETSC? As mentioned in MUMPS's FAQ,
Re: [petsc-users] Using MUMPS and (PT)SCOTCH with PETSC
You need the https://gforge.inria.fr/frs/download.php/file/28934/scotch_5.1.12a_esmumps.tar.gz version with mumps in the tar ball name Barry On Sep 5, 2014, at 2:17 PM, Kai Song ks...@lbl.gov wrote: Hi Barry, Thanks for the suggestion. I downloaded the scotch tar ball in the petsc source directory, and set up the configure flag as suggested, but I got the following error: make[1]: Leaving directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotchmetis'make: *** No rule to make target `ptesmumps'. Stop. *** === Trying to download file://scotch_5.1.12b.tar.gz for PTSCOTCH === === Compiling PTScotch; this may take several minutes === *** UNABLE to CONFIGURE with GIVEN OPTIONS(see configure.log for details): --- Error running make on PTScotch: Could not execute cd /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src make clean ptesmumps: /bin/mkdir -p ../bin /bin/mkdir -p ../include /bin/mkdir -p ../lib (cd libscotch ; make clean) make[1]: Entering directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotch' rm -f *~ *.o lib*.a parser_yy.c parser_ly.h parser_ll.c *scotch.h *scotchf.h y.output dummysizes make[1]: Leaving directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotch' (cd scotch ; make clean) make[1]: Entering directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/scotch' rm -f *~ *.o acpl amk_ccc amk_fft2 amk_grf amk_hy amk_m2 amk_p2 atst gbase gcv *ggath *gmap gmk_hy gmk_m2 gmk_m3 gmk_msh gmk_ub2 gmtst *gord gotst gout *gpart *gscat *gtst mcv mmk_m2 mmk_m3 mord mtst make[1]: Leaving directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/scotch' (cd libscotchmetis ; make clean) make[1]: Entering directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotchmetis' rm -f *~ *.o lib*.a make[1]: Leaving directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12/src/libscotchmetis'make: *** No rule to make target `ptesmumps'. Stop. *** makefile:15: arch-linux2-c-debug/conf/petscvariables: No such file or directory /clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/variables:117: /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscvariables: No such file or directory /clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/rules:993: /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules: No such file or directory make: *** No rule to make target `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules'. Stop. makefile:15: arch-linux2-c-debug/conf/petscvariables: No such file or directory /clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/variables:117: /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscvariables: No such file or directory /clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/rules:993: /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules: No such file or directory make: *** No rule to make target `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules'. Stop. makefile:15: conf/petscvariables: No such file or directory make: *** No rule to make target `conf/petscvariables'. Stop. Do you know what am I missing? Thanks, Kai On Fri, Sep 5, 2014 at 11:25 AM, Barry Smith bsm...@mcs.anl.gov wrote: Set a new value for PETSC_ARCH Obtain the Scotch
Re: [petsc-users] Using MUMPS and (PT)SCOTCH with PETSC
Hi Barry, I got the similar error for scotch_5.1.12b_esmumps.tar.gz: = === Trying to download file://scotch_5.1.12b_esmumps.tar.gz for PTSCOTCH === === Compiling PTScotch; this may take several minutes === *** UNABLE to CONFIGURE with GIVEN OPTIONS(see configure.log for details): --- Error running make on PTScotch: Could not execute cd /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12_esmumps/src make clean ptesmumps: /bin/mkdir -p ../bin /bin/mkdir -p ../include /bin/mkdir -p ../lib (cd libscotch ; make clean) make[1]: Entering directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12_esmumps/src/libscotch' rm -f *~ *.o lib*.a parser_yy.c parser_ly.h parser_ll.c *scotch.h *scotchf.h y.output dummysizes make[1]: Leaving directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12_esmumps/src/libscotch' (cd scotch ; make clean) make[1]: Entering directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12_esmumps/src/scotch' rm -f *~ *.o acpl amk_ccc amk_fft2 amk_grf amk_hy amk_m2 amk_p2 atst gbase gcv *ggath *gmap gmk_hy gmk_m2 gmk_m3 gmk_msh gmk_ub2 gmtst *gord gotst gout *gpart *gscat *gtst mcv mmk_m2 mmk_m3 mord mtst make[1]: Leaving directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12_esmumps/src/scotch' (cd libscotchmetis ; make clean) make[1]: Entering directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12_esmumps/src/libscotchmetis' rm -f *~ *.o lib*.a make[1]: Leaving directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12_esmumps/src/libscotchmetis' (cd esmumps ;make clean) make[1]: Entering directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12_esmumps/src/esmumps' rm -f *~ common.h *.o lib*.a main_esmumps make[1]: Leaving directory `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/externalpackages/scotch_5.1.12_esmumps/src/esmumps'make: *** No rule to make target `ptesmumps'. Stop. *** makefile:15: arch-linux2-c-debug/conf/petscvariables: No such file or directory /clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/variables:117: /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscvariables: No such file or directory /clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/rules:993: /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules: No such file or directory make: *** No rule to make target `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules'. Stop. makefile:15: arch-linux2-c-debug/conf/petscvariables: No such file or directory /clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/variables:117: /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscvariables: No such file or directory /clusterfs/voltaire/home/software/source/petsc-3.5.0/conf/rules:993: /clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules: No such file or directory make: *** No rule to make target `/clusterfs/voltaire/home/software/source/petsc-3.5.0/arch-linux2-c-debug/conf/petscrules'. Stop. makefile:15: conf/petscvariables: No such file or directory make: *** No rule to make target `conf/petscvariables'. Stop. = Feel free to let me know if you need any additional information. My configure line looks like this: ./configure --prefix=/clusterfs/voltaire/home/software/modules/petsc/3.5.0 --download-fblaslapack=1 --download-mumps=1 --download-parmetis=parmetis-4.0.3.tar.gz --download-ptscotch=scotch_5.1.12b_esmumps.tar.gz --download-scalapack --download-metis=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --with-mpi-dir=/global/software/sl-6.x86_64/modules/gcc/4.4.7/openmpi/1.6.5-gcc/ Thanks, Kai On Fri, Sep 5, 2014 at 2:50 PM, Barry Smith bsm...@mcs.anl.gov wrote: You need the https://gforge.inria.fr/frs/download.php/file/28934/scotch_5.1.12a_esmumps.tar.gz version with mumps in the tar ball name Barry On Sep 5, 2014, at 2:17 PM, Kai
Re: [petsc-users] Using MUMPS and (PT)SCOTCH with PETSC
Barry Smith bsm...@mcs.anl.gov writes: You need the https://gforge.inria.fr/frs/download.php/file/28934/scotch_5.1.12a_esmumps.tar.gz version with mumps in the tar ball name And yes, this is absurd, so don't forget to complain to upstream. One can only hope that overwhelming user outcry may be sufficient for them to reconsider this distribution decision. pgpo8lQuxfrVy.pgp Description: PGP signature
Re: [petsc-users] Using MUMPS and (PT)SCOTCH with PETSC
Kai Song ks...@lbl.gov writes: Hi Barry, I got the similar error for scotch_5.1.12b_esmumps.tar.gz: Looks like this commit was only valid with 6.0, so you'll have to revert it to use 5.1.12b. https://bitbucket.org/petsc/petsc/commits/4620623451f619bc2d23a7c3de5bdf5ee5fd0ff2 Is there a reason you prefer Scotch over ParMETIS? pgpPVV1ssOEl6.pgp Description: PGP signature
