[SCM] saga branch, master, updated. upstream/2.1.0+dfsg-137-g13fc947

2013-12-05 Thread Francesco Paolo Lovergine 
The following commit has been merged in the master branch:
commit df427d9a50e2b2dbb63b072cd2f0aba0ad214150
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Thu Dec 5 18:36:37 2013 +0100

Minor fixes and updated for sid.

diff --git a/debian/changelog b/debian/changelog
index 96aaf01..6009201 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,8 +1,16 @@
-saga (2.1.0+dfsg-1) UNRELEASED; urgency=low
+saga (2.1.0+dfsg-1) unstable; urgency=low
 
+  [ Johan Van de Wauw ]
   * Update to new upstream version
+(closes: #717624)
   * Uses wxwidgets 3.0 instead of 2.8
 
+  [ Francesco Paolo Lovergine ]
+  * Tagged for sid.
+  * Changed path to relative ones in *.install file for dh_install.
+  * Truly annotate the previous fix.
+(closes: #715109)
+
  -- Johan Van de Wauw johan.vandew...@gmail.com  Thu, 14 Nov 2013 21:16:53 
-0500
 
 saga (2.0.8+dfsg-4) unstable; urgency=low
diff --git a/debian/libsaga-dev.install b/debian/libsaga-dev.install
index 1f362fb..16fd5b5 100644
--- a/debian/libsaga-dev.install
+++ b/debian/libsaga-dev.install
@@ -1,5 +1,5 @@
 src/saga_core/saga_api/*.h /usr/include/saga_api/
 src/saga_core/saga_gdi/*.h /usr/include/saga_gdi/
 debian/saga-depends /usr/bin/
-/usr/lib/libsaga_api.so
-/usr/lib/libsaga_gdi.so
+usr/lib/libsaga_api.so
+usr/lib/libsaga_gdi.so
diff --git a/debian/libsaga.install b/debian/libsaga.install
index 3cebce7..a4ca146 100644
--- a/debian/libsaga.install
+++ b/debian/libsaga.install
@@ -1 +1 @@
-/usr/lib/libsaga*-*.so
+usr/lib/libsaga*-*.so

-- 
Saga GIS

___
Pkg-grass-devel mailing list
Pkg-grass-devel@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel

[SCM] saga tag, debian/2.1.0+dfsg-1, created. upstream/2.1.0+dfsg-137-g13fc947

2013-12-05 Thread Francesco Paolo Lovergine 
The tag, debian/2.1.0+dfsg-1 has been created
at  13fc947dc6f0d2c87ff2903bf221533f11699165 (commit)

- Shortlog 
commit 13fc947dc6f0d2c87ff2903bf221533f11699165
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Thu Dec 5 18:41:26 2013 +0100

Removed erroneous close tag. Still not fixed upstream.
---

-- 
Saga GIS

___
Pkg-grass-devel mailing list
Pkg-grass-devel@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel

Processing of saga_2.1.0+dfsg-1_i386.changes

2013-12-05 Thread Debian FTP Masters 
saga_2.1.0+dfsg-1_i386.changes uploaded successfully to localhost
along with the files:
  saga_2.1.0+dfsg-1.dsc
  saga_2.1.0+dfsg.orig.tar.gz
  saga_2.1.0+dfsg-1.debian.tar.gz
  saga_2.1.0+dfsg-1_i386.deb
  libsaga-dev_2.1.0+dfsg-1_i386.deb
  libsaga_2.1.0+dfsg-1_i386.deb
  python-saga_2.1.0+dfsg-1_i386.deb

Greetings,

Your Debian queue daemon (running on host franck.debian.org)

___
Pkg-grass-devel mailing list
Pkg-grass-devel@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel

saga_2.1.0+dfsg-1_i386.changes ACCEPTED into unstable

2013-12-05 Thread Debian FTP Masters 


Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Thu, 14 Nov 2013 21:16:53 -0500
Source: saga
Binary: saga libsaga-dev libsaga python-saga
Architecture: source i386
Version: 2.1.0+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
Changed-By: Francesco Paolo Lovergine fran...@debian.org
Description: 
 libsaga- SAGA GIS development files
 libsaga-dev - SAGA GIS development files
 python-saga - SAGA GIS python bindings
 saga   - System for Automated Geoscientific Analyses
Closes: 715109
Changes: 
 saga (2.1.0+dfsg-1) unstable; urgency=low
 .
   [ Johan Van de Wauw ]
   * Update to new upstream version.
   * Uses wxwidgets 3.0 instead of 2.8
 .
   [ Francesco Paolo Lovergine ]
   * Tagged for sid.
   * Changed path to relative ones in *.install file for dh_install.
   * Truly annotate the previous fix.
 (closes: #715109)
Checksums-Sha1: 
 b3e1374a1293cfa05e9f3c5cad88ea95beac9464 1604 saga_2.1.0+dfsg-1.dsc
 8d6f64ecd4ded8a8fb3d39f3068633d4223739d9 3158181 saga_2.1.0+dfsg.orig.tar.gz
 36baa7efc2dadc6413707dda519f90c4b8b538ea 456241 saga_2.1.0+dfsg-1.debian.tar.gz
 785bf223480c1eec2f0d491b22a6bf8077bef9d4 2862902 saga_2.1.0+dfsg-1_i386.deb
 3154089e42b103592ea4ed430cc097cd302df263 118640 
libsaga-dev_2.1.0+dfsg-1_i386.deb
 c9c491063935b1bbe722d86b8df0ab1781f5 529578 libsaga_2.1.0+dfsg-1_i386.deb
 60597c5c2969df128d47c8658d9637da6e6b06e9 434294 
python-saga_2.1.0+dfsg-1_i386.deb
Checksums-Sha256: 
 b47485dc584ffe0810bd70238ab58bb398852773258b6bd906cbee0c4e9451d7 1604 
saga_2.1.0+dfsg-1.dsc
 2ff378f6f5667092fbe28ea33bf5a0c3a56c932c065911a6711662d6d25f2907 3158181 
saga_2.1.0+dfsg.orig.tar.gz
 dfe908da383ec6702e9375d48dbe207b9eb34e21ac32f6c13f030229de9911f1 456241 
saga_2.1.0+dfsg-1.debian.tar.gz
 e0153776248c3399fbb5c49de5290d547f891070e8a0531a8409c0f34ebd6dfe 2862902 
saga_2.1.0+dfsg-1_i386.deb
 6c5b830ac6751131b13741b8c7f927ad3823d4edb6d2ee6d2cc67e8b3c224356 118640 
libsaga-dev_2.1.0+dfsg-1_i386.deb
 4d5a5b2ec2b311b6468189b48f04c39f69edcfc6a26c3a938ec415b726888026 529578 
libsaga_2.1.0+dfsg-1_i386.deb
 0888b477467ef7fceb237cd0749d1385910a073e430bb5342756c1428f1ca597 434294 
python-saga_2.1.0+dfsg-1_i386.deb
Files: 
 d0e13919cbb3167c45fb09089d2f14ae 1604 science optional saga_2.1.0+dfsg-1.dsc
 d4601ba82ebc0fceaf4df70ec5471ddd 3158181 science optional 
saga_2.1.0+dfsg.orig.tar.gz
 682c6ee0b6cf5ddf269d929578dc0203 456241 science optional 
saga_2.1.0+dfsg-1.debian.tar.gz
 6efdab049d59f0e6942a50708a5c4e2d 2862902 science optional 
saga_2.1.0+dfsg-1_i386.deb
 ce2f30ddbc4ebe96580690f8d361d3c2 118640 libdevel optional 
libsaga-dev_2.1.0+dfsg-1_i386.deb
 26bf7bea8bec77c89d05be2511f2665b 529578 libs optional 
libsaga_2.1.0+dfsg-1_i386.deb
 cef4fa7532158a88fc2fafe6b5f39e58 434294 python optional 
python-saga_2.1.0+dfsg-1_i386.deb

-BEGIN PGP SIGNATURE-
Version: GnuPG v1.4.15 (GNU/Linux)

iEYEARECAAYFAlKg3CgACgkQpFNRmenyx0d3dACgpj9BsPzYMGfZvYguqBsT9Dpm
UVEAoNsH/BQDmqkaj8ZPZqSX4KrQ+7kC
=rUzr
-END PGP SIGNATURE-


Thank you for your contribution to Debian.

___
Pkg-grass-devel mailing list
Pkg-grass-devel@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel

Bug#715109: marked as done (Broken library symlink detected in libsaga-dev)

2013-12-05 Thread Debian Bug Tracking System 
Your message dated Thu, 05 Dec 2013 21:24:56 +
with message-id e1vogpo-0007jv...@franck.debian.org
and subject line Bug#715109: fixed in saga 2.1.0+dfsg-1
has caused the Debian Bug report #715109,
regarding Broken library symlink detected in libsaga-dev
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
715109: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=715109
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
---BeginMessage---
Package: libsaga-dev
Version: 2.0.8+dfsg-3
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts, broken-symlink, broken-symlink-shared-library

Hi,

During a test with piuparts, I noticed your package is
responsible for the presence of broken symlinks involving
a shared library. Such failures may indicate a significant
problem with the package.

Usually this is caused by a missing Depends. It may also be
triggered if a Recommended or reverse dependency package
owning the symlink target file is not yet installed. This type
of failure mode needs to be eliminated so that other symlink
problems become more visible. In this case, the problem can be
resolved by creating a trigger for the target file. See the
dpkg triggers documentation[1] and an example on the net[2] for
implementation details.

This is being filed as Serious because it represents a violation
of Policy. Section 8 states Packages containing shared
libraries must be constructed with a little care to make sure
that the shared library is always available.

A link to the log containing the indicated broken symlinks can
be found on piuparts.debian.org[3]. Search for Warn: Broken
Symlinks to see the failure point. A log showing the broken
symlink as an error is appended.

The log contains the following broken symlinks:

  /usr/lib/libsaga_api.so
- libsaga_api-2.0.8.so
  /usr/lib/libsaga_gdi.so
- libsaga_gdi-2.0.8.so


[1] - file:///usr/share/doc/dpkg-dev/triggers.txt.gz
[2] - http://www.seanius.net/blog/2009/09/dpkg-triggers-howto/
[3] - http://piuparts.debian.org/sid/broken_symlinks_issue.html


--

Start: 2013-07-05 22:06:54 EST

Package: libsaga-dev
Source: saga
Version: 2.0.8+dfsg-3
Installed-Size: 487
Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
Architecture: amd64
Replaces: libsaga ( 2.0.4+dfsg-3~)
Suggests: saga (= 2.0.8+dfsg-3)
Breaks: libsaga ( 2.0.4+dfsg-3~)
Description: SAGA GIS development files
Homepage: http://www.saga-gis.org/
Description-md5: 69520bc61abdf28171f5f6cba9362535
Tag: devel::library, role::devel-lib
Section: libdevel
Priority: optional
Filename: pool/main/s/saga/libsaga-dev_2.0.8+dfsg-3_amd64.deb
Size: 137464
MD5sum: ca7c29fa330cdaab69b6c89d97fd8bf6
SHA1: e47bed6123b1d177323222a94b0b0577ed8b6500
SHA256: 85a671a99109a980a1b430fbe4c5d729fad9ad1279a754d5ab800079472a80eb

Executing: sudo piuparts --scriptsdir /etc/piuparts/scripts 
--skip-logrotatefiles-test --warn-on-others --fail-on-broken-symlinks --mirror 
http://127.0.0.1/debian --tmpdir /var/tmp --arch amd64 -b 
/var/cache/piuparts/basetgz/sid.tar.gz -d sid --no-upgrade-test --apt 
libsaga-dev=2.0.8+dfsg-3
0m0.0s INFO: 
--
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of 
this logfile.
0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: 
--
0m0.0s INFO: piuparts version 0.54~201306172307~0.53-14-ge8900a0 starting up.
0m0.0s INFO: Command line arguments: '/usr/sbin/piuparts' '--scriptsdir' 
'/etc/piuparts/scripts' '--skip-logrotatefiles-test' '--warn-on-others' 
'--fail-on-broken-symlinks' '--mirror' 'http://127.0.0.1/debian' '--tmpdir' 
'/var/tmp' '--arch' 'amd64' '-b' '/var/cache/piuparts/basetgz/sid.tar.gz' '-d' 
'sid' '--no-upgrade-test' '--apt' 'libsaga-dev=2.0.8+dfsg-3'
0m0.0s INFO: Running on: Linux debian-testing 3.9-1-amd64 #1 SMP Debian 3.9.8-1 
x86_64
0m0.0s DEBUG: Created temporary directory /var/tmp/tmpmEDJyG
0m0.0s DEBUG: Unpacking /var/cache/piuparts/basetgz/sid.tar.gz into 
/var/tmp/tmpmEDJyG
0m0.0s DEBUG: Starting command: ['tar', '-C', '/var/tmp/tmpmEDJyG', '-zxf', 
'/var/cache/piuparts/basetgz/sid.tar.gz']
0m1.2s DEBUG: Command ok: ['tar', '-C', '/var/tmp/tmpmEDJyG', '-zxf', 
'/var/cache/piuparts/basetgz/sid.tar.gz']
0m1.2s DEBUG: Starting command: ['chroot', '/var/tmp/tmpmEDJyG', 'eatmydata', 
'mount', '-t', 'proc', 'proc', '/proc']
0m1.2s DEBUG: Command ok: ['chroot', '/var/tmp/tmpmEDJyG', 'eatmydata', 
'mount', '-t', 'proc', 'proc', '/proc']
0m1.2s DEBUG:

[SCM] hdf5 branch, master, updated. upstream/1.8.7-189-gce5459b

2013-12-05 Thread Gilles Filippini 
The following commit has been merged in the master branch:
commit 108c330d302e0a938b8e57aa1a0495043b95cadf
Author: Gilles Filippini p...@debian.org
Date:   Sat Nov 30 14:56:09 2013 +0100

debian/changelog: introduce new upstream release

diff --git a/debian/changelog b/debian/changelog
index cb03298..648e007 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,21 @@
+hdf5 (1.8.12-1) UNRELEASED; urgency=low
+
+  * Team Upload
+
+  * New upstream release.
++ New configure / cmake option to specify the location of a default
+  plugin
++ The h5repack utility was updated to use plugin filters
++ The following options were added to h5dump:
+  - The -N or --any_path option searches the file for paths that
+match the search path.
+  - The -A 0 option excludes the display of attributes.
++ Several changes were made to the C++ APIs. Some wrappers and
+  overloaded convenience functions were added, as well as a new
+  class, H5::H5Location.
+
+ -- Gilles Filippini p...@debian.org  Sat, 30 Nov 2013 14:35:04 +0100
+
 hdf5 (1.8.11-5) unstable; urgency=low
 
   * Forgot to update debian/control.in ...

-- 
Hierarchical Data Format 5 (HDF5)

___
Pkg-grass-devel mailing list
Pkg-grass-devel@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel

[SCM] hdf5 branch, master, updated. upstream/1.8.7-189-gce5459b

2013-12-05 Thread Gilles Filippini 
The following commit has been merged in the master branch:
commit 0cf92d531f24921e461d1a0ceba01b6449c7d380
Author: Gilles Filippini p...@debian.org
Date:   Sun Dec 1 19:24:53 2013 +0100

Clean '#MISSING: 1.8.11#' from symbols files.

diff --git a/debian/libhdf5-mpich2-7.symbols b/debian/libhdf5-mpich2-7.symbols
index e7a2665..2955e3b 100644
--- a/debian/libhdf5-mpich2-7.symbols
+++ b/debian/libhdf5-mpich2-7.symbols
@@ -555,7 +555,6 @@ libhdf5.so.7 libhdf5-mpich2-7 #MINVER#
  H5FD_mpi_get_rank@Base 1.8.7
  H5FD_mpi_get_size@Base 1.8.7
  H5FD_mpi_haddr_to_MPIOff@Base 1.8.7
-#MISSING: 1.8.11# H5FD_mpi_native_g@Base 1.8.7
  H5FD_mpi_setup_collective@Base 1.8.7
  H5FD_mpio_init@Base 1.8.7
  H5FD_mpio_term@Base 1.8.7
@@ -1555,7 +1554,6 @@ libhdf5.so.7 libhdf5-mpich2-7 #MINVER#
  H5Pget_driver@Base 1.8.7
  H5Pget_driver_info@Base 1.8.7
  H5Pget_dxpl_mpio@Base 1.8.7
-#MISSING: 1.8.11# H5Pget_dxpl_multi@Base 1.8.7
  H5Pget_edc_check@Base 1.8.7
  H5Pget_elink_acc_flags@Base 1.8.7
  H5Pget_elink_cb@Base 1.8.7
@@ -1642,7 +1640,6 @@ libhdf5.so.7 libhdf5-mpich2-7 #MINVER#
  H5Pset_dxpl_mpio_chunk_opt_num@Base 1.8.7
  H5Pset_dxpl_mpio_chunk_opt_ratio@Base 1.8.7
  H5Pset_dxpl_mpio_collective_opt@Base 1.8.7
-#MISSING: 1.8.11# H5Pset_dxpl_multi@Base 1.8.7
  H5Pset_edc_check@Base 1.8.7
  H5Pset_elink_acc_flags@Base 1.8.7
  H5Pset_elink_cb@Base 1.8.7
diff --git a/debian/libhdf5-openmpi-7.symbols b/debian/libhdf5-openmpi-7.symbols
index 6afc446..144fef3 100644
--- a/debian/libhdf5-openmpi-7.symbols
+++ b/debian/libhdf5-openmpi-7.symbols
@@ -555,7 +555,6 @@ libhdf5.so.7 libhdf5-openmpi-7 #MINVER#
  H5FD_mpi_get_rank@Base 1.8.7
  H5FD_mpi_get_size@Base 1.8.7
  H5FD_mpi_haddr_to_MPIOff@Base 1.8.7
-#MISSING: 1.8.11# H5FD_mpi_native_g@Base 1.8.7
  H5FD_mpi_setup_collective@Base 1.8.7
  H5FD_mpio_init@Base 1.8.7
  H5FD_mpio_term@Base 1.8.7
@@ -1555,7 +1554,6 @@ libhdf5.so.7 libhdf5-openmpi-7 #MINVER#
  H5Pget_driver@Base 1.8.7
  H5Pget_driver_info@Base 1.8.7
  H5Pget_dxpl_mpio@Base 1.8.7
-#MISSING: 1.8.11# H5Pget_dxpl_multi@Base 1.8.7
  H5Pget_edc_check@Base 1.8.7
  H5Pget_elink_acc_flags@Base 1.8.7
  H5Pget_elink_cb@Base 1.8.7
@@ -1642,7 +1640,6 @@ libhdf5.so.7 libhdf5-openmpi-7 #MINVER#
  H5Pset_dxpl_mpio_chunk_opt_num@Base 1.8.7
  H5Pset_dxpl_mpio_chunk_opt_ratio@Base 1.8.7
  H5Pset_dxpl_mpio_collective_opt@Base 1.8.7
-#MISSING: 1.8.11# H5Pset_dxpl_multi@Base 1.8.7
  H5Pset_edc_check@Base 1.8.7
  H5Pset_elink_acc_flags@Base 1.8.7
  H5Pset_elink_cb@Base 1.8.7

-- 
Hierarchical Data Format 5 (HDF5)

___
Pkg-grass-devel mailing list
Pkg-grass-devel@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel

[SCM] hdf5 branch, master, updated. upstream/1.8.7-189-gce5459b

2013-12-05 Thread Gilles Filippini 
The following commit has been merged in the master branch:
commit 837f2d0c41d02b671efd81d033f7799d113d440f
Author: Gilles Filippini p...@debian.org
Date:   Sun Dec 1 19:34:14 2013 +0100

Add tag '(optional)' to C++ symbols

diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index 2b7ad5b..e9ea660 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -2454,19 +2454,19 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  (optional)_ZN2H510AbstractDsD0Ev@Base 1.8.9
  (optional)_ZN2H510AbstractDsD1Ev@Base 1.8.9
  (optional)_ZN2H510AbstractDsD2Ev@Base 1.8.9
- _ZN2H510H5Location11dereferenceERKNS_9AttributeEPKv10H5R_type_t@Base 1.8.12
- _ZN2H510H5Location11dereferenceERKS0_PKv10H5R_type_t@Base 1.8.12
- _ZN2H510H5Location12iterateAttrsEPFvRS0_SsPvEPjS2_@Base 1.8.12
- _ZN2H510H5Location13p_dereferenceEiPKv10H5R_type_tPKc@Base 1.8.12
- _ZN2H510H5LocationC1ERKS0_@Base 1.8.12
- _ZN2H510H5LocationC1Ei@Base 1.8.12
- _ZN2H510H5LocationC1Ev@Base 1.8.12
- _ZN2H510H5LocationC2ERKS0_@Base 1.8.12
- _ZN2H510H5LocationC2Ei@Base 1.8.12
- _ZN2H510H5LocationC2Ev@Base 1.8.12
- _ZN2H510H5LocationD0Ev@Base 1.8.12
- _ZN2H510H5LocationD1Ev@Base 1.8.12
- _ZN2H510H5LocationD2Ev@Base 1.8.12
+ 
(optional)_ZN2H510H5Location11dereferenceERKNS_9AttributeEPKv10H5R_type_t@Base 
1.8.12
+ (optional)_ZN2H510H5Location11dereferenceERKS0_PKv10H5R_type_t@Base 1.8.12
+ (optional)_ZN2H510H5Location12iterateAttrsEPFvRS0_SsPvEPjS2_@Base 1.8.12
+ (optional)_ZN2H510H5Location13p_dereferenceEiPKv10H5R_type_tPKc@Base 1.8.12
+ (optional)_ZN2H510H5LocationC1ERKS0_@Base 1.8.12
+ (optional)_ZN2H510H5LocationC1Ei@Base 1.8.12
+ (optional)_ZN2H510H5LocationC1Ev@Base 1.8.12
+ (optional)_ZN2H510H5LocationC2ERKS0_@Base 1.8.12
+ (optional)_ZN2H510H5LocationC2Ei@Base 1.8.12
+ (optional)_ZN2H510H5LocationC2Ev@Base 1.8.12
+ (optional)_ZN2H510H5LocationD0Ev@Base 1.8.12
+ (optional)_ZN2H510H5LocationD1Ev@Base 1.8.12
+ (optional)_ZN2H510H5LocationD2Ev@Base 1.8.12
  (optional)_ZN2H510VarLenTypeC1EPKNS_8DataTypeE@Base 1.8.9
  (optional)_ZN2H510VarLenTypeC1ERKS0_@Base 1.8.9
  (optional)_ZN2H510VarLenTypeC1Ei@Base 1.8.9
@@ -2624,16 +2624,16 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  (optional)_ZN2H520IdComponentExceptionD2Ev@Base 1.8.9
  (optional)_ZN2H55Group5closeEv@Base 1.8.9
  (optional)_ZN2H55Group7p_setIdEi@Base 1.8.9
- _ZN2H55GroupC1ERKNS_10H5LocationEPKv10H5R_type_t@Base 1.8.12
- _ZN2H55GroupC1ERKNS_9AttributeEPKv10H5R_type_t@Base 1.8.12
+ (optional)_ZN2H55GroupC1ERKNS_10H5LocationEPKv10H5R_type_t@Base 1.8.12
+ (optional)_ZN2H55GroupC1ERKNS_9AttributeEPKv10H5R_type_t@Base 1.8.12
  (optional)_ZN2H55GroupC1ERKS0_@Base 1.8.9
 #MISSING: 1.8.12# (optional)_ZN2H55GroupC1ERNS_6H5FileEPKv10H5R_type_t@Base 
1.8.9
 #MISSING: 1.8.12# (optional)_ZN2H55GroupC1ERNS_8H5ObjectEPKv10H5R_type_t@Base 
1.8.9
 #MISSING: 1.8.12# (optional)_ZN2H55GroupC1ERNS_9AttributeEPKv10H5R_type_t@Base 
1.8.9
  (optional)_ZN2H55GroupC1Ei@Base 1.8.9
  (optional)_ZN2H55GroupC1Ev@Base 1.8.9
- _ZN2H55GroupC2ERKNS_10H5LocationEPKv10H5R_type_t@Base 1.8.12
- _ZN2H55GroupC2ERKNS_9AttributeEPKv10H5R_type_t@Base 1.8.12
+ (optional)_ZN2H55GroupC2ERKNS_10H5LocationEPKv10H5R_type_t@Base 1.8.12
+ (optional)_ZN2H55GroupC2ERKNS_9AttributeEPKv10H5R_type_t@Base 1.8.12
  (optional)_ZN2H55GroupC2ERKS0_@Base 1.8.9
 #MISSING: 1.8.12# (optional)_ZN2H55GroupC2ERNS_6H5FileEPKv10H5R_type_t@Base 
1.8.9
 #MISSING: 1.8.12# (optional)_ZN2H55GroupC2ERNS_8H5ObjectEPKv10H5R_type_t@Base 
1.8.9
@@ -2670,16 +2670,16 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  
(optional)_ZN2H57DataSet12iterateElemsEPvRKNS_8DataTypeERKNS_9DataSpaceEPFiS1_ijPKyS1_ES1_@Base
 1.8.9
  (optional)_ZN2H57DataSet5closeEv@Base 1.8.9
  (optional)_ZN2H57DataSet7p_setIdEi@Base 1.8.9
- _ZN2H57DataSetC1ERKNS_10H5LocationEPKv10H5R_type_t@Base 1.8.12
- _ZN2H57DataSetC1ERKNS_9AttributeEPKv10H5R_type_t@Base 1.8.12
+ (optional)_ZN2H57DataSetC1ERKNS_10H5LocationEPKv10H5R_type_t@Base 1.8.12
+ (optional)_ZN2H57DataSetC1ERKNS_9AttributeEPKv10H5R_type_t@Base 1.8.12
  (optional)_ZN2H57DataSetC1ERKS0_@Base 1.8.9
 #MISSING: 1.8.12# (optional)_ZN2H57DataSetC1ERNS_6H5FileEPKv10H5R_type_t@Base 
1.8.9
 #MISSING: 1.8.12# 
(optional)_ZN2H57DataSetC1ERNS_8H5ObjectEPKv10H5R_type_t@Base 1.8.9
 #MISSING: 1.8.12# 
(optional)_ZN2H57DataSetC1ERNS_9AttributeEPKv10H5R_type_t@Base 1.8.9
  (optional)_ZN2H57DataSetC1Ei@Base 1.8.9
  (optional)_ZN2H57DataSetC1Ev@Base 1.8.9
- _ZN2H57DataSetC2ERKNS_10H5LocationEPKv10H5R_type_t@Base 1.8.12
- _ZN2H57DataSetC2ERKNS_9AttributeEPKv10H5R_type_t@Base 1.8.12
+ (optional)_ZN2H57DataSetC2ERKNS_10H5LocationEPKv10H5R_type_t@Base 1.8.12
+ (optional)_ZN2H57DataSetC2ERKNS_9AttributeEPKv10H5R_type_t@Base 1.8.12
  (optional)_ZN2H57DataSetC2ERKS0_@Base 1.8.9
 #MISSING: 1.8.12# (optional)_ZN2H57DataSetC2ERNS_6H5FileEPKv10H5R_type_t@Base 
1.8.9
 #MISSING: 1.8.12# 
(optional)_ZN2H57DataSetC2ERNS_8H5ObjectEPKv10H5R_type_t@Base 1.8.9
@@ -2757,8 +2757,8 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  (optional)_ZN2H58DataType4copyERKNS_7DataSetE@Base 1.8.9

[SCM] hdf5 branch, master, updated. upstream/1.8.7-189-gce5459b

2013-12-05 Thread Gilles Filippini 
The following commit has been merged in the master branch:
commit 7822af84d540230ba0601e3695784366af3ca808
Author: Gilles Filippini p...@debian.org
Date:   Tue Dec 3 10:50:48 2013 +0100

debian/sort-symbols: script clean-up

diff --git a/debian/sort-symbols b/debian/sort-symbols
index 512e2f2..8ddf733 100755
--- a/debian/sort-symbols
+++ b/debian/sort-symbols
@@ -11,16 +11,17 @@ end
 
 # c++filt
 symbols.collect! do |symbol|
- if symbol.length  1 then
-   if symbol[2] =~ /^_Z/ then
- symbol[2] = '' + `echo #{symbol[2]} | c++filt`.chomp! + ''
- if symbol[1] then
-   flags = symbol[1][1...-1].split(|)
-   flags = (flags + [optional, c++]).uniq
-   symbol[1] = ( + flags.join(|) + )
- else
-   symbol[1] = (optional|c++)
- end
+ # if mangled c++ symbol
+ if symbol.length  1 and symbol[2] =~ /^_Z/ then
+   # unmangle
+   symbol[2] = '' + `echo #{symbol[2]} | c++filt`.chomp! + ''
+   # add (optional|c++) if not present
+   if symbol[1] then
+ flags = symbol[1][1...-1].split(|)
+ flags = (flags + [optional, c++]).uniq
+ symbol[1] = ( + flags.join(|) + )
+   else
+ symbol[1] = (optional|c++)
end
  end
  symbol

-- 
Hierarchical Data Format 5 (HDF5)

___
Pkg-grass-devel mailing list
Pkg-grass-devel@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel

[SCM] hdf5 branch, master, updated. upstream/1.8.7-189-gce5459b

2013-12-05 Thread Gilles Filippini 
The following commit has been merged in the master branch:
commit 457e155ef55f844a44a7c99f131e0f54e576208f
Author: Gilles Filippini p...@debian.org
Date:   Sun Dec 1 19:20:42 2013 +0100

Clean '#MISSING: 1.8.10#' from symbols files.

diff --git a/debian/libhdf5-mpich2-7.symbols b/debian/libhdf5-mpich2-7.symbols
index d860f01..e7a2665 100644
--- a/debian/libhdf5-mpich2-7.symbols
+++ b/debian/libhdf5-mpich2-7.symbols
@@ -294,88 +294,18 @@ libhdf5.so.7 libhdf5-mpich2-7 #MINVER#
  H5D__set_extent@Base 1.8.10
  H5D__vlen_get_buf_size@Base 1.8.10
  H5D__vlen_get_buf_size_alloc@Base 1.8.10
-#MISSING: 1.8.10# H5D_alloc_storage@Base 1.8.7
  H5D_btree_debug@Base 1.8.7
-#MISSING: 1.8.10# H5D_check_filters@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_addrmap@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_allocate@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_allocated@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_bh_info@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_cacheable@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_cinfo_cache_reset@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_collective_read@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_collective_write@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_copy@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_create@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_delete@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_dest@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_dump_index@Base 1.8.7
  H5D_chunk_idx_reset@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_init@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_is_space_alloc@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_lock@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_lookup@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_prune_by_extent@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_set_info@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_unlock@Base 1.8.7
-#MISSING: 1.8.10# H5D_chunk_update_cache@Base 1.8.7
  H5D_close@Base 1.8.7
-#MISSING: 1.8.10# H5D_compact_copy@Base 1.8.7
-#MISSING: 1.8.10# H5D_compact_fill@Base 1.8.7
-#MISSING: 1.8.10# H5D_contig_alloc@Base 1.8.7
-#MISSING: 1.8.10# H5D_contig_collective_read@Base 1.8.7
-#MISSING: 1.8.10# H5D_contig_collective_write@Base 1.8.7
-#MISSING: 1.8.10# H5D_contig_copy@Base 1.8.7
-#MISSING: 1.8.10# H5D_contig_delete@Base 1.8.7
-#MISSING: 1.8.10# H5D_contig_fill@Base 1.8.7
-#MISSING: 1.8.10# H5D_contig_get_addr@Base 1.8.7
-#MISSING: 1.8.10# H5D_contig_is_space_alloc@Base 1.8.7
-#MISSING: 1.8.10# H5D_contig_read@Base 1.8.7
-#MISSING: 1.8.10# H5D_contig_write@Base 1.8.7
-#MISSING: 1.8.10# H5D_create@Base 1.8.7
-#MISSING: 1.8.10# H5D_current_cache_size_test@Base 1.8.7
  H5D_def_dxpl_cache@Base 1.8.7
-#MISSING: 1.8.10# H5D_efl_bh_info@Base 1.8.7
-#MISSING: 1.8.10# H5D_efl_is_space_alloc@Base 1.8.7
-#MISSING: 1.8.10# H5D_fill@Base 1.8.7
-#MISSING: 1.8.10# H5D_fill_init@Base 1.8.7
-#MISSING: 1.8.10# H5D_fill_refill_vl@Base 1.8.7
-#MISSING: 1.8.10# H5D_fill_release@Base 1.8.7
-#MISSING: 1.8.10# H5D_fill_term@Base 1.8.7
  H5D_flush@Base 1.8.7
-#MISSING: 1.8.10# H5D_flush_real@Base 1.8.9
-#MISSING: 1.8.10# H5D_flush_sieve_buf@Base 1.8.7
  H5D_get_create_plist@Base 1.8.12-1
-#MISSING: 1.8.10# H5D_get_dxpl_cache@Base 1.8.7
-#MISSING: 1.8.10# H5D_get_offset@Base 1.8.7
-#MISSING: 1.8.10# H5D_get_space_status@Base 1.8.7
-#MISSING: 1.8.10# H5D_get_storage_size@Base 1.8.7
  H5D_init@Base 1.8.7
-#MISSING: 1.8.10# H5D_iterate@Base 1.8.7
-#MISSING: 1.8.10# H5D_layout_contig_size_test@Base 1.8.7
-#MISSING: 1.8.10# H5D_layout_meta_size@Base 1.8.7
-#MISSING: 1.8.10# H5D_layout_oh_create@Base 1.8.7
-#MISSING: 1.8.10# H5D_layout_oh_read@Base 1.8.7
-#MISSING: 1.8.10# H5D_layout_oh_write@Base 1.8.7
-#MISSING: 1.8.10# H5D_layout_set_io_ops@Base 1.8.7
-#MISSING: 1.8.10# H5D_layout_version_test@Base 1.8.7
-#MISSING: 1.8.10# H5D_mark@Base 1.8.7
-#MISSING: 1.8.10# H5D_mpio_opt_possible@Base 1.8.7
-#MISSING: 1.8.10# H5D_mpio_select_read@Base 1.8.7
-#MISSING: 1.8.10# H5D_mpio_select_write@Base 1.8.7
  H5D_nameof@Base 1.8.7
  H5D_oloc@Base 1.8.7
  H5D_open@Base 1.8.7
-#MISSING: 1.8.10# H5D_scatgath_read@Base 1.8.7
-#MISSING: 1.8.10# H5D_scatgath_write@Base 1.8.7
-#MISSING: 1.8.10# H5D_scatter_mem@Base 1.8.7
-#MISSING: 1.8.10# H5D_select_read@Base 1.8.7
-#MISSING: 1.8.10# H5D_select_write@Base 1.8.7
-#MISSING: 1.8.10# H5D_set_extent@Base 1.8.7
  H5D_term_interface@Base 1.8.7
  H5D_typeof@Base 1.8.7
-#MISSING: 1.8.10# H5D_vlen_get_buf_size@Base 1.8.7
-#MISSING: 1.8.10# H5D_vlen_get_buf_size_alloc@Base 1.8.7
  H5D_vlen_reclaim@Base 1.8.7
  H5Dclose@Base 1.8.7
  H5Dcreate1@Base 1.8.7
@@ -597,8 +527,6 @@ libhdf5.so.7 libhdf5-mpich2-7 #MINVER#
  H5FD_cmp@Base 1.8.7
  H5FD_core_init@Base 1.8.7
  H5FD_core_term@Base 1.8.7
-#MISSING: 1.8.10# H5FD_dxpl_close@Base 1.8.7
-#MISSING: 1.8.10# H5FD_dxpl_open@Base 1.8.7
  H5FD_family_init@Base 1.8.7
  H5FD_family_term@Base 1.8.7
  H5FD_fapl_close@Base 1.8.7
@@ -629,7 +557,6 @@ libhdf5.so.7 libhdf5-mpich2-7 #MINVER#
  H5FD_mpi_haddr_to_MPIOff@Base 1.8.7
 #MISSING: 1.8.11# H5FD_mpi_native_g@Base 1.8.7
  H5FD_mpi_setup_collective@Base 1.8.7
-#MISSING: 1.8.10# H5FD_mpi_teardown_collective@Base 1.8.7

[SCM] hdf5 annotated tag, upstream/1.8.12, created. upstream/1.8.12

2013-12-05 Thread Gilles Filippini 
The annotated tag, upstream/1.8.12 has been created
at  0a5d285f3c01264d243a0fbbe0ea5b04e391c6d0 (tag)
   tagging  f12fd401a83d66ab4d48f64dda83c80c4a877d22 (commit)
  replaces  upstream/1.8.7
 tagged by  Gilles Filippini
on  Mon Nov 25 23:32:52 2013 +0100

- Shortlog 
Upstream version 1.8.12

Francesco Paolo Lovergine (65):
  [svn-inject] Installing original source of hdf5
  [svn-inject] Forking hdf5 source to Trunk
  [svn-inject] Applying Debian modifications to trunk
  First round of changes
  Policy change
  commit f8b5b3e4c5c38c76701618372c6ec2bd81832621
  Fixing both control file and its template.
  Fixing control
  Changed debhelper level
  commit 98e1312aabf6660c74813acce4f7bf75a60df7f4
  Moving to new upstream release.
  Fixing changelog
  Added new homepage field
  Fixed homepage field
  Fixing #449723
  Added OpenMPI support and other (minor) changes.
  Changelog updated for fixed bug.
  Other minor changes
  Added Vcs-* fields
  Unapplying header patch for OpenMPI
  Integrating NMU changes
  Fixed changelog
  Fixating FTBS due to missing OpenMPI on some archs.
  Committing changes in debian/control
  Fixating #473669
  Fixating for #473871
  versioning for sed
  Control rebuilt
  First round for 1.6.7
  Fixed homepage field
  Major changes
  Added build-dep
  Long due changes
  Creating trunk directory
  [svn-inject] Applying Debian modifications to trunk
  Preparing for tagging.
  commit abc1d7bde71337fea85a12f43c73e695ffe706c0
  True fixes for shlibs.in
  Upgrade to 1.8.4
  Revised to support other archs.
  Adding previous NMU fix.
  Added README.source
  Adding missig documentation.
  Fixed documentation installation.
  Fixed migration issue.
  Sigh, still urgent change.
  One more virtual conflict.
  Fixed sigbus error in H5detect.
  Turn optimization off.
  Minor fix to changelog.
  Added test target.
  Updates for 1.8.4-patch1
  Adding default-mpi support.
  Annotation
  Fixed debian/control
  Fixed version.
  Merge branch 'upstream'
  Merge commit 'upstream/1.8.4-patch1'
  Fixating for source 3.0 and some lintian warnings.
  Typo fixed in changelog
  Merge branch 'master' of ssh://git.debian.org/git/pkg-grass/hdf5
  Removed 1.8.3 targets.
  Fixed changelog
  Ready for release.
  Adding documentation to source

Gilles Filippini (1):
  Imported Upstream version 1.8.12

Sylvestre Ledru (74):
  [ Sylvestre Ledru ]
  [ Sylvestre Ledru ]
  Merge commit 'upstream/1.8.6'
  Right version (1.8.6)
  Control updated regarding the new release
  Fix the upgrade process
  Remove dependency on libjpeg62-dev
  No longer relevant
  Frankie request = add the diff generated by the autotools into the 
repository
  Frankie request = add the diff generated by the autotools into the 
repository
  Preparation of the upload
  split in two patches
  Use the start flags + fix the fortran failure
  disable the disableH5fortran_detect.f90.diff patch
  Use the mpicxx instead of mpiCC
  * Add myself to the uploader
  Merge branch 'master' of git+ssh://git.debian.org/git/pkg-grass/hdf5
  * Workaround for bug #619281 while #622783 is not fixed
  * Disable the r16 check (Closes: #619281)
  * Get ride of the -m128bit-long-double FFLAGS (was introduced to fix bug
  * Get ride of DEBCC, DEBCXX  DEBFORTRAN useless variables
  Merge commit 'upstream/1.8.7'
  * git ignore added
  * Support of hurd-i386. Thanks to Pino Toscano for doing the work
  already applied
  openmpi is now working under arm
  Remove the .la file from the distribution
  Rename package from libhdf5-serial-1.8.7 to libhdf5-serial-7 since 
upstream is now trying to manage correctly sonames and other abi/api changes
  Missing conflicts + replaces + description of the change in the changelog
  C and Fortran symbols files introduced.
  Allez, let's go. trying to manage also symbols of c++
  Rename libhdf5-serial-* to libhdf5
  Update of the symbol list
  Update of the symbol list with s390, amd64  kfreebsd-amd64 symbols
  hdf5 (1.8.7-2~exp2) experimental; urgency=low
  Update of the symbol with amd64
  Add missing manpages + fix some issues
  Fix package-relation-with-self on libhdf5-7 (Provides:)
  enable the parallel build
  Fix a mistake in the control files
  kfreebsd-amd64 symbols
  s390
  powerpc symbols
  mipsel symbols
  Provides: libhdf5-dev removed
  kfreebsd-i386 symbols
  armel
  * Fix a mistake in the symbol declaration
  * Update of the powerpc symbols
  armel symbols
  +s390  powerpc symbols
  Merge branch

[SCM] hdf5 branch, master, updated. upstream/1.8.7-189-gce5459b

2013-12-05 Thread Gilles Filippini 
The following commit has been merged in the master branch:
commit 69cb6a283d7e05cb0d3ab6686492dcded77d9919
Merge: 75bc680716722932e52bb58c056954db7783 
f12fd401a83d66ab4d48f64dda83c80c4a877d22
Author: Gilles Filippini p...@debian.org
Date:   Mon Nov 25 23:32:52 2013 +0100

Merge tag 'upstream/1.8.12'

Upstream version 1.8.12


-- 
Hierarchical Data Format 5 (HDF5)

___
Pkg-grass-devel mailing list
Pkg-grass-devel@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel

[SCM] hdf5 branch, master, updated. upstream/1.8.7-189-gce5459b

2013-12-05 Thread Gilles Filippini 
The following commit has been merged in the master branch:
commit 68a2939a54a32138b1b508c4edd488ea73fd0ff0
Author: Gilles Filippini p...@debian.org
Date:   Sat Nov 30 15:45:05 2013 +0100

Refresh patches and add description when missing.

diff --git a/debian/changelog b/debian/changelog
index 6a49b06..c23c49a 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -17,6 +17,12 @@ hdf5 (1.8.12-1) UNRELEASED; urgency=low
   * Drop patches (fixed upstream):
 + ftbfs-ia64.diff
 + 0001-Fix-long-double-detection.patch
+  * Refresh patches and add missing description:
++ path_max.diff
++ relax-version-check.patch
++ skip_cxx_inclusion.diff
++ soname.diff
++ ullong_force.diff
 
  -- Gilles Filippini p...@debian.org  Sat, 30 Nov 2013 14:35:04 +0100
 
diff --git a/debian/patches/path_max.diff b/debian/patches/path_max.diff
index b8527f0..269bf54 100644
--- a/debian/patches/path_max.diff
+++ b/debian/patches/path_max.diff
@@ -1,3 +1,8 @@
+Description: avoid the issue of PATH_MAX not being available on Hurd.
+ Not really clean and suitable for upstream though, but can do the job
+ for making hdf5 compile and available in Debian.
+Author: Pino Toscano toscano.p...@tiscali.it
+Bug-Debian: http://bugs.debian.org/627896
 Index: hdf5-1.8.11/src/H5F.c
 ===
 --- hdf5-1.8.11.orig/src/H5F.c 2013-07-02 16:40:55.621612700 +0200
diff --git a/debian/patches/relax-version-check.patch 
b/debian/patches/relax-version-check.patch
index a32ed5b..63c17f0 100644
--- a/debian/patches/relax-version-check.patch
+++ b/debian/patches/relax-version-check.patch
@@ -5,12 +5,12 @@ Description: remove check on patch version
  The version check will be executed with compile time values on every file
  access see e.g. H5F_ACC_RDONLY in src/H5Fpublic.h
 Author: Julian Taylor jtay...@ubuntu.com
-
-Index: hdf5-1.8.11/src/H5.c
+Bug-Debian: http://bugs.debian.org/693610
+Index: hdf5/src/H5.c
 ===
 hdf5-1.8.11.orig/src/H5.c  2013-07-02 16:40:56.945612741 +0200
-+++ hdf5-1.8.11/src/H5.c   2013-07-02 16:40:56.941612742 +0200
-@@ -666,8 +666,7 @@
+--- hdf5.orig/src/H5.c 2013-11-30 15:09:12.0 +0100
 hdf5/src/H5.c  2013-11-30 15:09:12.0 +0100
+@@ -668,8 +668,7 @@
  disable_version_check = (unsigned int)HDstrtol (s, NULL, 0);
  }
  
diff --git a/debian/patches/skip_cxx_inclusion.diff 
b/debian/patches/skip_cxx_inclusion.diff
index 83293e0..f4fea7f 100644
--- a/debian/patches/skip_cxx_inclusion.diff
+++ b/debian/patches/skip_cxx_inclusion.diff
@@ -1,3 +1,6 @@
+Description: Skip the inclusion of C++ when dealing with parallel HDF5.
+ Thanks to Mike Miller, Rafael Laboissiere  Sebastien Villemot.
+Author: Sylvestre Ledru sylvestre.le...@scilab-enterprises.com
 Index: hdf5-1.8.11/src/H5public.h
 ===
 --- hdf5-1.8.11.orig/src/H5public.h2013-07-02 16:40:57.269612753 +0200
diff --git a/debian/patches/soname.diff b/debian/patches/soname.diff
index aaccf10..5ae5250 100644
--- a/debian/patches/soname.diff
+++ b/debian/patches/soname.diff
@@ -1,91 +1,110 @@
-Index: hdf5-1.8.11/c++/src/Makefile.in
+Description: Rollback upstream change from soname 7 = 8.
+ They only removed two functions which were unused and buggy.
+ I checked with them and they agree it was not worth changing the soname.
+
+Upstream mail:
+---
+I checked with the developers to be sure it would be okay for you to plug
+these functions back in and keep soname 7. The short answer is yes.
+
+It seems that these APIs were broken and users would not or could not have
+been using them. Therefore, adding them back in for the sake of 
distribution simplification should not have a negative effect on most (or all?) 
user
+applications.
+
+Rather than removing those APIs outright, we should have deprecated them 
and
+removed them from the documentation, but not actually removed them from 
the software until the next major release. :|
+---
+
+(I am not planning to put these two functions back)
+Author: Sylvestre Ledru sylvestre.le...@scilab-enterprises.com
+Index: hdf5/c++/src/Makefile.in
 ===
 hdf5-1.8.11.orig/c++/src/Makefile.in   2013-07-02 16:40:57.605612763 
+0200
-+++ hdf5-1.8.11/c++/src/Makefile.in2013-07-02 16:40:57.601612763 +0200
+--- hdf5.orig/c++/src/Makefile.in  2013-11-30 15:18:23.0 +0100
 hdf5/c++/src/Makefile.in   2013-11-30 15:18:23.0 +0100
 @@ -466,7 +466,7 @@
  
  # Add libtool shared library version numbers to the HDF5 library
  # See libtool versioning documentation online.
 -LT_VERS_INTERFACE = 8
 +LT_VERS_INTERFACE = 7
- LT_VERS_REVISION = 0
+ LT_VERS_REVISION = 1
  LT_VERS_AGE = 0
  
-Index: hdf5-1.8.11/config/lt_vers.am
+Index: hdf5/config/lt_vers.am

[SCM] hdf5 branch, master, updated. upstream/1.8.12-106-g7aaa464

2013-12-05 Thread Gilles Filippini 
The following commit has been merged in the master branch:
commit 7aaa46476bf1ba0c687a19ce1ed075d94ead6b53
Author: Gilles Filippini p...@debian.org
Date:   Thu Dec 5 23:41:07 2013 +0100

debian/README.source: TO-DO section

diff --git a/debian/README.source b/debian/README.source
index fd0b20e..a37916b 100644
--- a/debian/README.source
+++ b/debian/README.source
@@ -51,5 +51,12 @@ Considering applying this piece of advice from Julien 
Cristau:
  libtool plutôt que -version-info.  Ça prend directement comme argument
  major:minor:micro, donc on se perd pas dans des calculs à la con.
 
+TO-DO
+-
+* patch libtool usage to use -version-number instead of -version-info'
+* ship the C++ libs as a separate package
+* propose to upstream to use a separate libtool version for each language
+  (C, C++, Fortran)?
+
  -- Francesco Paolo Lovergine fran...@debian.org Mon Jan 25 06:00:00 CET 2010
  -- Gilles Filippini p...@debian.org  Thu, 05 Dec 2013 23:04:45 +0100

-- 
Hierarchical Data Format 5 (HDF5)

___
Pkg-grass-devel mailing list
Pkg-grass-devel@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel

[SCM] hdf5 branch, master, updated. upstream/1.8.12-106-g7aaa464

2013-12-05 Thread Gilles Filippini 
The following commit has been merged in the master branch:
commit 1134a0bf17c567909c028512e41b49b25b8c4617
Author: Gilles Filippini p...@debian.org
Date:   Thu Dec 5 23:40:46 2013 +0100

Introduce de-activated patch to ship the C++ libs separatly

diff --git a/debian/patches/hdf5-as-sep-package.diff 
b/debian/patches/hdf5-as-sep-package.diff
new file mode 100644
index 000..807ca8c
--- /dev/null
+++ b/debian/patches/hdf5-as-sep-package.diff
@@ -0,0 +1,143 @@
+Description: ship the c++ libs into a separate package
+ This patch from Julien Cristau is work in progress against release 1.8.8
+ and isn't used in the packaging yet. Keeping it around for now.
+Author: Julien Cristau jcris...@debian.org
+diff -Nru hdf5-1.8.8/debian/changelog hdf5-1.8.8/debian/changelog
+--- hdf5-1.8.8/debian/changelog2012-03-08 11:09:55.0 +0100
 hdf5-1.8.8/debian/changelog2013-10-08 15:27:41.0 +0200
+@@ -1,3 +1,9 @@
++hdf5 (1.8.8-9+lglb1) UNRELEASED; urgency=low
++
++  * Bring back the c++ libs to a separate package.
++
++ -- Julien Cristau julien.cris...@logilab.fr  Tue, 08 Oct 2013 15:27:17 
+0200
++
+ hdf5 (1.8.8-9) unstable; urgency=low
+ 
+   * Force the dependency on the serpack for hdf5-tools  hdf5-helpers.
+diff -Nru hdf5-1.8.8/debian/control hdf5-1.8.8/debian/control
+--- hdf5-1.8.8/debian/control  2012-03-08 11:18:22.0 +0100
 hdf5-1.8.8/debian/control  2013-10-08 18:11:24.0 +0200
+@@ -44,11 +44,27 @@
+  .
+  This package contains debug libraries.
+ 
++Package: libhdf5-7-cpp
++Section: libs
++Priority: extra
++Architecture: any
++Depends:
++ ${shlibs:Depends},
++ ${misc:Depends},
++ libhdf5-7 (= ${binary:Version}),
++Description: Hierarchical Data Format 5 (HDF5) - C++ libraries
++ HDF5 is a file format and library for storing scientific data. 
++ HDF5 was designed and implemented to address the deficiencies of
++ HDF4.x. It has a more powerful and flexible data model, supports
++ files larger than 2 GB, and supports parallel I/O.
++ .
++ This package contains C++ libraries.
++
+ Package: libhdf5-dev
+ Section: libdevel
+ Architecture: any
+ Depends: libhdf5-7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev,
+- ${misc:Depends}, hdf5-helpers
++ ${misc:Depends}, hdf5-helpers, libhdf5-7-cpp (= ${binary:Version})
+ Suggests: libhdf5-doc
+ Provides: libhdf5-serial-dev
+ Replaces: libhdf5-serial-dev ( 1.8.8-2)
+diff -Nru hdf5-1.8.8/debian/control.in hdf5-1.8.8/debian/control.in
+--- hdf5-1.8.8/debian/control.in   2012-03-08 10:33:48.0 +0100
 hdf5-1.8.8/debian/control.in   2013-10-08 15:30:14.0 +0200
+@@ -44,11 +44,27 @@
+  .
+  This package contains debug libraries.
+ 
++Package: libhdf5-@SONAME@-cpp
++Section: libs
++Priority: extra
++Architecture: any
++Depends:
++ ${shlibs:Depends},
++ ${misc:Depends},
++ libhdf5-@SONAME@ (= ${binary:Version}),
++Description: Hierarchical Data Format 5 (HDF5) - C++ libraries
++ HDF5 is a file format and library for storing scientific data. 
++ HDF5 was designed and implemented to address the deficiencies of
++ HDF4.x. It has a more powerful and flexible data model, supports
++ files larger than 2 GB, and supports parallel I/O.
++ .
++ This package contains C++ libraries.
++
+ Package: libhdf5-dev
+ Section: libdevel
+ Architecture: any
+ Depends: libhdf5-@SONAME@ (= ${binary:Version}), zlib1g-dev, libjpeg-dev,
+- ${misc:Depends}, hdf5-helpers
++ ${misc:Depends}, hdf5-helpers, libhdf5-@SONAME@-cpp (= ${binary:Version})
+ Suggests: libhdf5-doc
+ Provides: libhdf5-serial-dev
+ Replaces: libhdf5-serial-dev ( 1.8.8-2)
+diff -Nru hdf5-1.8.8/debian/libhdf5-7-cpp.install 
hdf5-1.8.8/debian/libhdf5-7-cpp.install
+--- hdf5-1.8.8/debian/libhdf5-7-cpp.install1970-01-01 01:00:00.0 
+0100
 hdf5-1.8.8/debian/libhdf5-7-cpp.install2013-10-08 15:22:58.0 
+0200
+@@ -0,0 +1,2 @@
++usr/lib/libhdf5_cpp.so.7*
++usr/lib/libhdf5_hl_cpp.so.7*
+diff -Nru hdf5-1.8.8/debian/rules hdf5-1.8.8/debian/rules
+--- hdf5-1.8.8/debian/rules2012-03-08 11:09:08.0 +0100
 hdf5-1.8.8/debian/rules2013-10-08 18:06:33.0 +0200
+@@ -91,7 +91,7 @@
+ --with-pthread --enable-linux-lfs --enable-unsupported \
+ --enable-shared --enable-production=$(USE_PROD) \
+ --disable-sharedlib-rpath --with-zlib 
--with-default-api-version=v18
+-SERIAL_ONLY_FLAGS = --enable-fortran --enable-threadsafe
++SERIAL_ONLY_FLAGS = --enable-fortran --enable-threadsafe --enable-cxx
+ 
+ configure: configure-stamp-debian configure-stamp \
+  $(configure_stamp_openmpi) configure-stamp-mpich2
+@@ -186,8 +186,9 @@
+   dh_testroot
+   -mkdir debian/build/tmpinst
+   $(MAKE) -C debian/build/ install 
prefix=$(CURDIR)/debian/build/tmpinst/usr
+-  dh_install -p$(serpack) -p$(package)-dev -phdf5-helpers -phdf5-tools \
++  dh_install -p$(serpack) -p$(package)-dev -phdf5-helpers -phdf5-tools 
-p$(serpack)-cpp \
+   --sourcedir=debian/build/tmpinst

Bug#730755: Missing license information

2013-12-05 Thread Francesco P. Lovergine 
On Fri, Nov 29, 2013 at 09:37:53AM +0100, Luca Falavigna wrote:
 Source: liblas
 Version: 1.2.1-5.1
 Severity: serious
 
 
 Some portion of code contain works licensed under different terms than
 those mentioned in copyright file:
 
  * src/gt_wkt_srs.cpp
  * src/Verson.rc

This file is Windows related. I don't think it should be considered
in the copyright file.

-- 
Francesco P. Lovergine

___
Pkg-grass-devel mailing list
Pkg-grass-devel@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel

Bug#730754: include/liblas/detail/sha1.hpp is non-free

2013-12-05 Thread Francesco P. Lovergine 
On Fri, Nov 29, 2013 at 09:37:52AM +0100, Luca Falavigna wrote:
 Source: liblas
 Version: 1.2.1-5.1
 Severity: serious
 
 
 include/liblas/detail/sha1.hpp is licensed under these terms:
   //  sha1.h
   //
   //  Copyright (C) 1998
   //  Paul E. Jones pau...@arid.us
   //  All Rights Reserved.
   //
   //  This software is licensed as freeware.  Permission to distribute
   //  this software in source and binary forms is hereby granted without
   //  a fee.  THIS SOFTWARE IS PROVIDED 'AS IS' AND WITHOUT ANY EXPRESSED
   //  OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
   //  WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
   //  THE AUTHOR SHALL NOT BE HELD LIABLE FOR ANY DAMAGES RESULTING
   //  FROM THE USE OF THIS SOFTWARE, EITHER DIRECTLY OR INDIRECTLY, INCLUDING,
   //  BUT NOT LIMITED TO, LOSS OF DATA OR DATA BEING RENDERED INACCURATE.
 
 Thus, this portion of code is non-free.
 

This issue still appears in the 1.7 (latest) version. A proper way to fix this
is adopting/adapting a license-compatible implementation such as: 
http://tamale.net/sha1
It is not complicated at all and I could provide a patch if Howard had not
time to fix this issue upstream.

-- 
Francesco P. Lovergine

___
Pkg-grass-devel mailing list
Pkg-grass-devel@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel