[packages/mysql] - rel 6; back to 5.5 behaviour of secure_auth
commit 610a5a467da5ed3fd04eac5ecacffdb1a8257b74 Author: Arkadiusz Miśkiewicz ar...@maven.pl Date: Fri Nov 29 11:18:11 2013 +0100 - rel 6; back to 5.5 behaviour of secure_auth mysql-no-default-secure-auth.patch | 98 ++ mysql.spec | 4 +- 2 files changed, 101 insertions(+), 1 deletion(-) --- diff --git a/mysql.spec b/mysql.spec index a480a51..0ad5dfe 100644 --- a/mysql.spec +++ b/mysql.spec @@ -35,7 +35,7 @@ Summary(uk.UTF-8):MySQL - швидкий SQL-сервер Summary(zh_CN.UTF-8): MySQL数据库服务器 Name: mysql Version: 5.6.14 -Release: 5 +Release: 6 License: GPL + MySQL FLOSS Exception Group: Applications/Databases # Source0Download: http://dev.mysql.com/downloads/mysql/5.5.html#downloads @@ -60,6 +60,7 @@ Source14: my.cnf Patch1:%{name}-versioning.patch Patch2:%{name}hotcopy-5.0-5.5.patch Patch3:bug-67402.patch +Patch4:mysql-no-default-secure-auth.patch # from fedora Patch6:%{name}-system-users.patch @@ -493,6 +494,7 @@ mv sphinx-*/mysqlse storage/sphinx %patch1 -p1 %patch2 -p1 %patch3 -p1 +%patch4 -p1 %patch6 -p1 diff --git a/mysql-no-default-secure-auth.patch b/mysql-no-default-secure-auth.patch new file mode 100644 index 000..26cf10c --- /dev/null +++ b/mysql-no-default-secure-auth.patch @@ -0,0 +1,98 @@ +--- Percona-Server-5.6.14-rel62.0/client/mysql.cc~ 2013-10-22 09:42:41.0 +0200 Percona-Server-5.6.14-rel62.0/client/mysql.cc 2013-11-23 13:20:56.986861400 +0100 +@@ -152,7 +152,7 @@ + vertical=0, line_numbers=1, column_names=1,opt_html=0, +opt_xml=0,opt_nopager=1, opt_outfile=0, named_cmds= 0, + tty_password= 0, opt_nobeep=0, opt_reconnect=1, +- opt_secure_auth= TRUE, ++ opt_secure_auth= 0, +default_pager_set= 0, opt_sigint_ignore= 0, +auto_vertical_output= 0, +show_warnings= 0, executing_query= 0, interrupted_query= 0, +--- Percona-Server-5.6.14-rel62.0/client/mysql.cc~ 2013-11-23 14:34:06.0 +0100 Percona-Server-5.6.14-rel62.0/client/mysql.cc 2013-11-23 15:25:56.195617871 +0100 +@@ -1737,7 +1737,7 @@ +1, ULONG_MAX, 0, 1, 0}, + {secure-auth, OPT_SECURE_AUTH, Refuse client connecting to server if it + uses old (pre-4.1.1) protocol., opt_secure_auth, +-opt_secure_auth, 0, GET_BOOL, NO_ARG, 1, 0, 0, 0, 0, 0}, ++opt_secure_auth, 0, GET_BOOL, NO_ARG, 0, 0, 0, 0, 0, 0}, + {server-arg, OPT_SERVER_ARG, Send embedded server this as a parameter., +0, 0, 0, GET_STR, REQUIRED_ARG, 0, 0, 0, 0, 0, 0}, + {show-warnings, OPT_SHOW_WARNINGS, Show warnings after every statement., +--- Percona-Server-5.6.14-rel62.0/sql/sys_vars.cc~ 2013-11-23 15:30:45.0 +0100 Percona-Server-5.6.14-rel62.0/sql/sys_vars.cc 2013-11-23 15:30:50.922370696 +0100 +@@ -2655,9 +2655,7 @@ +Disallow authentication for accounts that have old (pre-4.1) +passwords, +GLOBAL_VAR(opt_secure_auth), CMD_LINE(OPT_ARG, OPT_SECURE_AUTH), +- DEFAULT(TRUE), +- NO_MUTEX_GUARD, NOT_IN_BINLOG, +- ON_CHECK(on_check_opt_secure_auth) ++ DEFAULT(FALSE) +); + + static Sys_var_charptr Sys_secure_file_priv( +MySQL 5.6.11 does not allow pre-4.1.1 password hashes although the server is +started with skip-secure-auth option (secure-auth mode disabled), this patch +enables this feature again, it's a mysql_init() backport from MySQL 5.6.10. + +mysql SHOW VARIABLES LIKE 'secure_auth' ; ++---+---+ +| Variable_name | Value | ++---+---+ +| secure_auth | OFF | ++---+---+ + +$ mysql -uexample -pexample test +ERROR 2049 (HY000): Connection using old (pre-4.1.1) authentication protocol refused (client option 'secure_auth' enabled) + +This bug has been also reported by Jørgen Thomsen: http://bugs.mysql.com/bug.php?id=69027 + +Santi Saez 2013-04-22 / powerstack.org + +diff -urN mysql-5.6.11.orig/sql-common/client.c mysql-5.6.11/sql-common/client.c +--- mysql-5.6.11.orig/sql-common/client.c 2013-04-05 14:27:18.0 +0200 mysql-5.6.11/sql-common/client.c 2013-04-22 23:11:45.754001616 +0200 +@@ -4747,27 +4747,10 @@ + + if (mysql-passwd[0]) + { +-/* +- If --secure-auth option is used, throw an error. +- Note that, we do not need to check for CLIENT_SECURE_CONNECTION +- capability of server. If server is not capable of handling secure +- connections, we would have raised error before reaching here. +- +- TODO: Change following code to access MYSQL structure through +- client-side plugin service. +-*/ +-if (mysql-options.secure_auth) +-{ +- set_mysql_error(mysql, CR_SECURE_AUTH, unknown_sqlstate); ++char scrambled[SCRAMBLE_LENGTH_323 + 1]; ++scramble_323(scrambled,
[packages/VirtualBox] - updated BRs
commit df3c39bd4d7aa68dd5caead72ee53581b0619c81 Author: Karol Krenski char...@pld-linux.org Date: Fri Nov 29 11:23:05 2013 +0100 - updated BRs VirtualBox.spec | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) --- diff --git a/VirtualBox.spec b/VirtualBox.spec index 3b6682e..21be83a 100644 --- a/VirtualBox.spec +++ b/VirtualBox.spec @@ -114,7 +114,7 @@ BuildRequires: bin86 BuildRequires: curl-devel BuildRequires: device-mapper-devel %{?with_doc:BuildRequires: docbook-dtd44-xml} -BuildRequires: fltk-devel +%{?with_lightdm:BuildRequires: fltk-devel} BuildRequires: gcc = 5:3.2.3 %{?with_webservice:BuildRequires: gsoap-devel} BuildRequires: issue @@ -127,6 +127,7 @@ BuildRequires: libstdc++-devel = 5:3.2.3 BuildRequires: libstdc++-static = 5:3.2.3 BuildRequires: libuuid-devel BuildRequires: libvncserver-devel = 0.9.9 +BuildRequires: libvpx-devel BuildRequires: libxml2-devel = 2.6.26 BuildRequires: libxslt-devel = 1.1.17 BuildRequires: libxslt-progs = 1.1.17 gitweb: http://git.pld-linux.org/gitweb.cgi/packages/VirtualBox.git/commitdiff/df3c39bd4d7aa68dd5caead72ee53581b0619c81 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/libmbfl] - release 4 (by relup.sh)
commit 7cf36e004d8a0a74725ac1b1a823310010d86e7d Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 11:27:34 2013 +0100 - release 4 (by relup.sh) libmbfl.spec | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) --- diff --git a/libmbfl.spec b/libmbfl.spec index b93f26b..462dde5 100644 --- a/libmbfl.spec +++ b/libmbfl.spec @@ -6,7 +6,7 @@ Summary:Streamable kanji code filter and converter Summary(pl.UTF-8): Strumieniowy filtr i konwerter kodu kanji Name: libmbfl Version: 1.3.2 -Release: 3 +Release: 4 License: LGPL 2.1 Group: Libraries Source0: https://github.com/moriyoshi/libmbfl/archive/8d14bff/%{name}-%{version}.tar.gz gitweb: http://git.pld-linux.org/gitweb.cgi/packages/libmbfl.git/commitdiff/7cf36e004d8a0a74725ac1b1a823310010d86e7d ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-Formula] Created branch master
The branch 'master' was created. Summary of new commits: e1545ba... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-Formula] - new
commit e1545ba58e35f5688bf4c866441c174870c18428 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 11:47:53 2013 +0100 - new R-cran-Formula.spec | 51 +++ 1 file changed, 51 insertions(+) --- diff --git a/R-cran-Formula.spec b/R-cran-Formula.spec new file mode 100644 index 000..79815c7 --- /dev/null +++ b/R-cran-Formula.spec @@ -0,0 +1,51 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename Formula +Summary: Extended Model Formulas +Name: R-cran-%{modulename} +Version: 1.1r1 +Release: 1 +License: GPL v2+ +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: bf47f043979dc1587c442aca1d8ad4fa +URL: http://socserv.socsci.mcmaster.ca/jfox/ +BuildRequires: R = 2.8.1 +BuildRequires: texlive-tex-thumbpdf +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +Infrastructure for extended formulas with multiple parts on +the right-hand side and/or multiple responses on the left-hand side. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%post +(cd %{_libdir}/R/library; umask 022; cat */CONTENTS ../doc/html/search/index.txt + R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --index) + +%postun +if [ -f %{_libdir}/R/bin/Rcmd ];then + (cd %{_libdir}/R/library; umask 022; cat */CONTENTS ../doc/html/search/index.txt + R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --index) +fi + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-Formula.git/commitdiff/e1545ba58e35f5688bf4c866441c174870c18428 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-Formula: Formula_1.1-1.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/Formula_1.1-1.tar.gz bf47f043979dc1587c442aca1d8ad4fa Formula_1.1-1.tar.gz Size: 148430 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-Formula] - drop non-working post scriptlets - rel 2
commit c33096047203ff0e1eb78ca3a32213973fc2492e Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 11:53:46 2013 +0100 - drop non-working post scriptlets - rel 2 R-cran-Formula.spec | 12 +--- 1 file changed, 1 insertion(+), 11 deletions(-) --- diff --git a/R-cran-Formula.spec b/R-cran-Formula.spec index 79815c7..837cfa1 100644 --- a/R-cran-Formula.spec +++ b/R-cran-Formula.spec @@ -3,7 +3,7 @@ Summary: Extended Model Formulas Name: R-cran-%{modulename} Version: 1.1r1 -Release: 1 +Release: 2 License: GPL v2+ Group: Applications/Math Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz @@ -35,16 +35,6 @@ R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ %clean rm -rf $RPM_BUILD_ROOT -%post -(cd %{_libdir}/R/library; umask 022; cat */CONTENTS ../doc/html/search/index.txt - R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --index) - -%postun -if [ -f %{_libdir}/R/bin/Rcmd ];then - (cd %{_libdir}/R/library; umask 022; cat */CONTENTS ../doc/html/search/index.txt - R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --index) -fi - %files %defattr(644,root,root,755) %doc %{modulename}/DESCRIPTION gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-Formula.git/commitdiff/c33096047203ff0e1eb78ca3a32213973fc2492e ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-Hmisc] - new
commit 4807c88ef7189e91a9a3294f41e5caaf64d9a9d1 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 11:55:16 2013 +0100 - new R-cran-Hmisc.spec | 46 ++ 1 file changed, 46 insertions(+) --- diff --git a/R-cran-Hmisc.spec b/R-cran-Hmisc.spec new file mode 100644 index 000..2216be5 --- /dev/null +++ b/R-cran-Hmisc.spec @@ -0,0 +1,46 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename Hmisc +Summary: Harrell Miscellaneous +Name: R-cran-%{modulename} +Version: 3.13r0 +Release: 1 +License: GPL v2+ +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: 5ed3c94c11f67244be99922730495206 +URL: http://socserv.socsci.mcmaster.ca/jfox/ +BuildRequires: R = 2.8.1 +BuildRequires: R-cran-Formula +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +Requires: R-cran-Formula +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +The Hmisc package contains many functions useful for data analysis, +high-level graphics, utility operations, functions for computing +sample size and power, importing datasets, imputing missing values, +advanced table making, variable clustering, character string +manipulation, conversion of S objects to LaTeX code, and recoding +variables. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-Hmisc.git/commitdiff/4807c88ef7189e91a9a3294f41e5caaf64d9a9d1 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-Hmisc] Created branch master
The branch 'master' was created. Summary of new commits: 4807c88... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-Hmisc: Hmisc_3.13-0.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/Hmisc_3.13-0.tar.gz 5ed3c94c11f67244be99922730495206 Hmisc_3.13-0.tar.gz Size: 587751 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-dichromat] Created branch master
The branch 'master' was created. Summary of new commits: aa9be4b... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-dichromat] - new
commit aa9be4b001d6d42fdc26de3860209d2ca3340587 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 11:58:49 2013 +0100 - new R-cran-dichromat.spec | 40 1 file changed, 40 insertions(+) --- diff --git a/R-cran-dichromat.spec b/R-cran-dichromat.spec new file mode 100644 index 000..34f995d --- /dev/null +++ b/R-cran-dichromat.spec @@ -0,0 +1,40 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename dichromat +Summary: Color Schemes for Dichromats +Name: R-cran-%{modulename} +Version: 2.0r0 +Release: 1 +License: GPL v2 +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: 84e194ac95a69763d740947a7ee346a6 +URL: http://socserv.socsci.mcmaster.ca/jfox/ +BuildRequires: R = 2.8.1 +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +Collapse red-green or green-blue distinctions to simulate the effects +of different types of color-blindness. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-dichromat.git/commitdiff/aa9be4b001d6d42fdc26de3860209d2ca3340587 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-dichromat: dichromat_2.0-0.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/dichromat_2.0-0.tar.gz 84e194ac95a69763d740947a7ee346a6 dichromat_2.0-0.tar.gz Size: 84320 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-labeling] - new
commit 85704b4e69fa7d6b681849a86d246e11438f2844 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:07:41 2013 +0100 - new R-cran-labeling.spec | 39 +++ 1 file changed, 39 insertions(+) --- diff --git a/R-cran-labeling.spec b/R-cran-labeling.spec new file mode 100644 index 000..91ada69 --- /dev/null +++ b/R-cran-labeling.spec @@ -0,0 +1,39 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename labeling +Summary: Axis Labeling +Name: R-cran-%{modulename} +Version: 0.2 +Release: 1 +License: MIT +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: 8df4dd1ddea128d7e0ac2bf266c66d59 +URL: http://cran.fhcrc.org/web/packages/labeling/index.html +BuildRequires: R = 2.8.1 +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +Provides a range of axis labeling algorithms. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-labeling.git/commitdiff/85704b4e69fa7d6b681849a86d246e11438f2844 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-labeling] Created branch master
The branch 'master' was created. Summary of new commits: 85704b4... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-labeling: labeling_0.2.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/labeling_0.2.tar.gz 8df4dd1ddea128d7e0ac2bf266c66d59 labeling_0.2.tar.gz Size: 9998 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-stringr] Created branch master
The branch 'master' was created. Summary of new commits: 11842e6... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-stringr] - new
commit 11842e66d3caae9843c4a6d1c45e3a94e4a9f79f Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:10:47 2013 +0100 - new R-cran-stringr.spec | 44 1 file changed, 44 insertions(+) --- diff --git a/R-cran-stringr.spec b/R-cran-stringr.spec new file mode 100644 index 000..38d1cf2 --- /dev/null +++ b/R-cran-stringr.spec @@ -0,0 +1,44 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename stringr +Summary: Make it easier to work with strings +Name: R-cran-%{modulename} +Version: 0.6.2 +Release: 1 +License: MIT +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: 452628504e0910c1d0b1756370716f87 +URL: http://cran.fhcrc.org/web/packages/stringr/index.html +BuildRequires: R = 2.8.1 +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +stringr is a set of simple wrappers that make R's string functions +more consistent, simpler and easier to use. It does this by ensuring +that: function and argument names (and positions) are consistent, +all functions deal with NA's and zero length character appropriately, +and the output data structures from each function matches the input +data structures of other functions. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-stringr.git/commitdiff/11842e66d3caae9843c4a6d1c45e3a94e4a9f79f ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-stringr: stringr_0.6.2.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/stringr_0.6.2.tar.gz 452628504e0910c1d0b1756370716f87 stringr_0.6.2.tar.gz Size: 20636 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-colorspace] - new
commit a54af15fa1f4f1a3c978d183791828061fd56868 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:23:58 2013 +0100 - new R-cran-colorspace.spec | 42 ++ 1 file changed, 42 insertions(+) --- diff --git a/R-cran-colorspace.spec b/R-cran-colorspace.spec new file mode 100644 index 000..930434d --- /dev/null +++ b/R-cran-colorspace.spec @@ -0,0 +1,42 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename colorspace +Summary: Color Space Manipulation +Name: R-cran-%{modulename} +Version: 1.2r4 +Release: 1 +License: BSD +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: 1f9a05587ffae27fc3e4da7503d016fc +URL: http://cran.fhcrc.org/web/packages/colorspace/index.html +BuildRequires: R = 2.8.1 +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +Carries out mapping between assorted color spaces including RGB, HSV, +HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB and polar CIELAB. +Qualitative, sequential, and diverging color palettes based on HCL +colors are provided. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} --no-build-vignettes + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-colorspace.git/commitdiff/a54af15fa1f4f1a3c978d183791828061fd56868 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-colorspace] Created branch master
The branch 'master' was created. Summary of new commits: a54af15... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-vcd] Created branch master
The branch 'master' was created. Summary of new commits: 03b3e75... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-colorspace: colorspace_1.2-4.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/colorspace_1.2-4.tar.gz 1f9a05587ffae27fc3e4da7503d016fc colorspace_1.2-4.tar.gz Size: 242791 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-vcd] - new
commit 03b3e754827af4a64f35540d290e2c8b86ebf27b Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:25:37 2013 +0100 - new R-cran-vcd.spec | 44 1 file changed, 44 insertions(+) --- diff --git a/R-cran-vcd.spec b/R-cran-vcd.spec new file mode 100644 index 000..93159f2 --- /dev/null +++ b/R-cran-vcd.spec @@ -0,0 +1,44 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename vcd +Summary: Visualizing Categorical Data +Name: R-cran-%{modulename} +Version: 1.3r1 +Release: 1 +License: GPL v2 +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: 3529759583680bd45f8b4ddf3252dc39 +URL: http://cran.fhcrc.org/web/packages/vcd/index.html +BuildRequires: R = 2.8.1 +BuildRequires: R-cran-colorspace +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +Requires: R-cran-colorspace +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +Visualization techniques, data sets, summary and inference procedures +aimed particularly at categorical data. Special emphasis is given to +highly extensible grid graphics. The package was inspired by the book +Visualizing Categorical Data by Michael Friendly. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} --no-build-vignettes + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-vcd.git/commitdiff/03b3e754827af4a64f35540d290e2c8b86ebf27b ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-vcd: vcd_1.3-1.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/vcd_1.3-1.tar.gz 3529759583680bd45f8b4ddf3252dc39 vcd_1.3-1.tar.gz Size: 839779 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-munsell] Created branch master
The branch 'master' was created. Summary of new commits: ded53ed... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-munsell] - new
commit ded53edc01d00a397c5c02a8dbd01f775907fabd Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:27:00 2013 +0100 - new R-cran-munsell.spec | 41 + 1 file changed, 41 insertions(+) --- diff --git a/R-cran-munsell.spec b/R-cran-munsell.spec new file mode 100644 index 000..9081d6c --- /dev/null +++ b/R-cran-munsell.spec @@ -0,0 +1,41 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename munsell +Summary: Munsell colour system +Name: R-cran-%{modulename} +Version: 0.4.2 +Release: 1 +License: MIT +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: 45561402fe3ffb8e534a1487bb60d938 +URL: http://cran.fhcrc.org/web/packages/munsell/index.html +BuildRequires: R = 2.8.1 +BuildRequires: R-cran-colorspace +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +Requires: R-cran-colorspace +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +Functions for exploring and using the Munsell colour system. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-munsell.git/commitdiff/ded53edc01d00a397c5c02a8dbd01f775907fabd ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-munsell: munsell_0.4.2.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/munsell_0.4.2.tar.gz 45561402fe3ffb8e534a1487bb60d938 munsell_0.4.2.tar.gz Size: 91026 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-plyr] Created branch master
The branch 'master' was created. Summary of new commits: 8a96333... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-plyr] - new
commit 8a963334a7072dfff8230297b79841f742f33530 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:29:30 2013 +0100 - new R-cran-plyr.spec | 45 + 1 file changed, 45 insertions(+) --- diff --git a/R-cran-plyr.spec b/R-cran-plyr.spec new file mode 100644 index 000..6fa222d --- /dev/null +++ b/R-cran-plyr.spec @@ -0,0 +1,45 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename plyr +Summary: Tools for splitting, applying and combining data +Name: R-cran-%{modulename} +Version: 1.8 +Release: 1 +License: GPL v2 +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: e1c1d2f0c47fd16b2cef6ec9c2e5883c +URL: http://cran.fhcrc.org/web/packages/plyr/index.html +BuildRequires: R = 2.8.1 +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +plyr is a set of tools that solves a common set of problems: you need +to break a big problem down into manageable pieces, operate on each +pieces and then put all the pieces back together. For example, +you might want to fit a model to each spatial location or time point +in your study, summarise data by panels or collapse high-dimensional +arrays to simpler summary statistics. The development of plyr has been +generously supported by BD (Becton Dickinson). + +%prep +%setup -q -c + +%build +R CMD build %{modulename} --no-build-vignettes + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-plyr.git/commitdiff/8a963334a7072dfff8230297b79841f742f33530 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-scales] Created branch master
The branch 'master' was created. Summary of new commits: 0fbb8b9... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-plyr: plyr_1.8.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/plyr_1.8.tar.gz e1c1d2f0c47fd16b2cef6ec9c2e5883c plyr_1.8.tar.gz Size: 384462 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-scales] - new
commit 0fbb8b97c8691a0c659c89d1087c1d5c21301c9c Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:30:49 2013 +0100 - new R-cran-scales.spec | 52 1 file changed, 52 insertions(+) --- diff --git a/R-cran-scales.spec b/R-cran-scales.spec new file mode 100644 index 000..e6602df --- /dev/null +++ b/R-cran-scales.spec @@ -0,0 +1,52 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename scales +Summary: Scale functions for graphics +Name: R-cran-%{modulename} +Version: 0.2.3 +Release: 1 +License: GPL v2 +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: 426e5a785d4bc5b9ba8aa10d2bc043a3 +URL: http://cran.fhcrc.org/web/packages/scales/index.html +BuildRequires: R = 2.8.1 +BuildRequires: R-cran-RColorBrewer +BuildRequires: R-cran-stringr +BuildRequires: R-cran-dichromat +BuildRequires: R-cran-munsell = 0.2 +BuildRequires: R-cran-plyr = 1.2 +BuildRequires: R-cran-labeling +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +Requires: R-cran-RColorBrewer +Requires: R-cran-#, stringr +Requires: R-cran-dichromat +Requires: R-cran-munsell = 0.2 +Requires: R-cran-plyr = 1.2 +Requires: R-cran-labeling +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +Scales map data to aesthetics, and provide methods for automatically +determining breaks and labels for axes and legends. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-scales.git/commitdiff/0fbb8b97c8691a0c659c89d1087c1d5c21301c9c ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-scales: scales_0.2.3.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/scales_0.2.3.tar.gz 426e5a785d4bc5b9ba8aa10d2bc043a3 scales_0.2.3.tar.gz Size: 39429 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-scales] - typo
commit fd40e2784b97e8d038f67a4fd3cf18ecd501de67 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:33:10 2013 +0100 - typo R-cran-scales.spec | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) --- diff --git a/R-cran-scales.spec b/R-cran-scales.spec index e6602df..11949ab 100644 --- a/R-cran-scales.spec +++ b/R-cran-scales.spec @@ -21,7 +21,7 @@ Requires(post,postun):perl-base Requires(post,postun): textutils Requires: R Requires: R-cran-RColorBrewer -Requires: R-cran-#, stringr +Requires: R-cran-stringr Requires: R-cran-dichromat Requires: R-cran-munsell = 0.2 Requires: R-cran-plyr = 1.2 gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-scales.git/commitdiff/fd40e2784b97e8d038f67a4fd3cf18ecd501de67 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-biovizBase] - new
commit 89efce48a542645eb11bcfc09e4905a9abd9d1e4 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:35:59 2013 +0100 - new R-biovizBase.spec | 69 +++ 1 file changed, 69 insertions(+) --- diff --git a/R-biovizBase.spec b/R-biovizBase.spec new file mode 100644 index 000..4f9c17e --- /dev/null +++ b/R-biovizBase.spec @@ -0,0 +1,69 @@ +%definepacknamebiovizBase + +Summary: Basic graphic utilities for visualization of genomic data +Name: R-%{packname} +Version: 1.10.4 +Release: 1 +License: Artistic 2.0 +Group: X11/Applications +Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz +# Source0-md5: c9f2652887977e5283bcbb6b9e30b14a +URL: http://www.bioconductor.org/packages/release/bioc/html/biovizBase.html +BuildRequires: R +BuildRequires: R-cran-scales +BuildRequires: R-cran-Hmisc +BuildRequires: R-cran-RColorBrewer +BuildRequires: R-cran-dichromat +BuildRequires: R-GenomicRanges +BuildRequires: R-Biostrings +BuildRequires: R-Rsamtools +BuildRequires: R-GenomicFeatures +BuildRequires: texlive-latex +Requires: R +Requires: R-scales +Requires: R-Hmisc +Requires: R-RColorBrewer +Requires: R-dichromat +Requires: R-GenomicRanges +Requires: R-Biostrings +Requires: R-Rsamtools +Requires: R-GenomicFeatures +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +The biovizBase package is designed to provide a set of utilities, +color schemes and conventions for genomic data. It serves as the base +for various high-level packages for biological data visualization. +This saves development effort and encourages consistency. + +%prep +%setup -c -q -n %{packname} + +%build + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library + +%{_bindir}/R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%dir %{_libdir}/R/library/%{packname}/ +%doc %{_libdir}/R/library/%{packname}/doc/ +%doc %{_libdir}/R/library/%{packname}/html/ +%doc %{_libdir}/R/library/%{packname}/DESCRIPTION +%doc %{_libdir}/R/library/%{packname}/NEWS +%{_libdir}/R/library/%{packname}/NAMESPACE +%{_libdir}/R/library/%{packname}/INDEX +%{_libdir}/R/library/%{packname}/Meta/ +%{_libdir}/R/library/%{packname}/R/ +%{_libdir}/R/library/%{packname}/help/ +%{_libdir}/R/library/%{packname}/data/ +%{_libdir}/R/library/%{packname}/examples/ +%{_libdir}/R/library/%{packname}/extdata/ +%dir %{_libdir}/R/library/%{packname}/libs +%attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/biovizBase.so gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-biovizBase.git/commitdiff/89efce48a542645eb11bcfc09e4905a9abd9d1e4 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-biovizBase] Created branch master
The branch 'master' was created. Summary of new commits: 89efce4... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-biovizBase: biovizBase_1.10.4.tar.gz
Files fetched: 1 STORED: http://www.bioconductor.org/packages/release/bioc/src/contrib/biovizBase_1.10.4.tar.gz c9f2652887977e5283bcbb6b9e30b14a biovizBase_1.10.4.tar.gz Size: 1035620 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-biovizBase] - fix deps
commit 24fb6ce88e6d9351c6029f114082aa75282af3bb Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:39:04 2013 +0100 - fix deps R-biovizBase.spec | 8 1 file changed, 4 insertions(+), 4 deletions(-) --- diff --git a/R-biovizBase.spec b/R-biovizBase.spec index 4f9c17e..1937692 100644 --- a/R-biovizBase.spec +++ b/R-biovizBase.spec @@ -20,10 +20,10 @@ BuildRequires: R-Rsamtools BuildRequires: R-GenomicFeatures BuildRequires: texlive-latex Requires: R -Requires: R-scales -Requires: R-Hmisc -Requires: R-RColorBrewer -Requires: R-dichromat +Requires: R-cran-scales +Requires: R-cran-Hmisc +Requires: R-cran-RColorBrewer +Requires: R-cran-dichromat Requires: R-GenomicRanges Requires: R-Biostrings Requires: R-Rsamtools gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-biovizBase.git/commitdiff/24fb6ce88e6d9351c6029f114082aa75282af3bb ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-fastcluster] Created branch master
The branch 'master' was created. Summary of new commits: 232883c... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-fastcluster] - new
commit 232883c78f63c9a13b37a3a93fc6c023957c2bd9 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:45:46 2013 +0100 - new R-cran-fastcluster.spec | 48 1 file changed, 48 insertions(+) --- diff --git a/R-cran-fastcluster.spec b/R-cran-fastcluster.spec new file mode 100644 index 000..220a9cd --- /dev/null +++ b/R-cran-fastcluster.spec @@ -0,0 +1,48 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename fastcluster +Summary: Fast hierarchical clustering routines for R and Python +Name: R-cran-%{modulename} +Version: 1.1.11 +Release: 1 +License: GPL v2 +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: 9c2654e574237c4c72b5d3fa60bf +URL: http://cran.fhcrc.org/web/packages/fastcluster/index.html +BuildRequires: R = 2.8.1 +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +This is a two-in-one package which provides interfaces to both R and +Python. It implements fast hierarchical, agglomerative clustering +routines. Part of the functionality is designed as drop-in replacement +for existing routines: “linkage” in the SciPy package +“scipy.cluster.hierarchy”, “hclust” in R's “stats” package, and the +“flashClust” package. It provides the same functionality with the +benefit of a much faster implementation. Moreover, there are +memory-saving routines for clustering of vector data, which go beyond +what the existing packages provide. For information on how to install +the Python files, see the file INSTALL in the source distribution. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-fastcluster.git/commitdiff/232883c78f63c9a13b37a3a93fc6c023957c2bd9 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-fastcluster: fastcluster_1.1.11.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/fastcluster_1.1.11.tar.gz 9c2654e574237c4c72b5d3fa60bf fastcluster_1.1.11.tar.gz Size: 169803 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-reshape2] - new
commit 1fdea0c5addbaecd350b463b0d169cb02487ab05 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:47:12 2013 +0100 - new R-cran-reshape2.spec | 40 1 file changed, 40 insertions(+) --- diff --git a/R-cran-reshape2.spec b/R-cran-reshape2.spec new file mode 100644 index 000..62251d7 --- /dev/null +++ b/R-cran-reshape2.spec @@ -0,0 +1,40 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename reshape2 +Summary: Flexibly reshape data: a reboot of the reshape package +Name: R-cran-%{modulename} +Version: 1.2.2 +Release: 1 +License: GPL v2 +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: 4b13c53b2a184c0498b351608ff8a085 +URL: http://cran.fhcrc.org/web/packages/reshape2/index.html +BuildRequires: R = 2.8.1 +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +Reshape lets you flexibly restructure and aggregate data using just +two functions: melt and cast. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-reshape2.git/commitdiff/1fdea0c5addbaecd350b463b0d169cb02487ab05 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-reshape2] Created branch master
The branch 'master' was created. Summary of new commits: 1fdea0c... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-reshape2: reshape2_1.2.2.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/reshape2_1.2.2.tar.gz 4b13c53b2a184c0498b351608ff8a085 reshape2_1.2.2.tar.gz Size: 27220 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-proto] - new
commit a9da911943091b2d04842fc60e6b93cdc575bdcf Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:57:02 2013 +0100 - new R-cran-proto.spec | 40 1 file changed, 40 insertions(+) --- diff --git a/R-cran-proto.spec b/R-cran-proto.spec new file mode 100644 index 000..7775235 --- /dev/null +++ b/R-cran-proto.spec @@ -0,0 +1,40 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename proto +Summary: Prototype object-based programming +Name: R-cran-%{modulename} +Version: 0.3r10 +Release: 1 +License: GPL v2 +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: d5523943a5be6ca2f0ab557c900f8212 +URL: http://cran.fhcrc.org/web/packages/proto/index.html +BuildRequires: R = 2.8.1 +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +An object oriented system using object-based, also called +prototype-based, rather than class-based object oriented ideas. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-proto.git/commitdiff/a9da911943091b2d04842fc60e6b93cdc575bdcf ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-proto] Created branch master
The branch 'master' was created. Summary of new commits: a9da911... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-proto: proto_0.3-10.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/proto_0.3-10.tar.gz d5523943a5be6ca2f0ab557c900f8212 proto_0.3-10.tar.gz Size: 530758 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-gtable] Created branch master
The branch 'master' was created. Summary of new commits: 80c569e... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-gtable] - new
commit 80c569e61f7bba3c59a3a5d2f2c45014001bb6e1 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:58:11 2013 +0100 - new R-cran-gtable.spec | 39 +++ 1 file changed, 39 insertions(+) --- diff --git a/R-cran-gtable.spec b/R-cran-gtable.spec new file mode 100644 index 000..7b9923d --- /dev/null +++ b/R-cran-gtable.spec @@ -0,0 +1,39 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename gtable +Summary: Arrange grobs in tables +Name: R-cran-%{modulename} +Version: 0.1.2 +Release: 1 +License: GPL v2 +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: be491aa5220f0059a0e1cb04679b6563 +URL: http://cran.fhcrc.org/web/packages/gtable/index.html +BuildRequires: R = 2.8.1 +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +Tools to make it easier to work with tables of grobs. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-gtable.git/commitdiff/80c569e61f7bba3c59a3a5d2f2c45014001bb6e1 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-gtable: gtable_0.1.2.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/gtable_0.1.2.tar.gz be491aa5220f0059a0e1cb04679b6563 gtable_0.1.2.tar.gz Size: 19667 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-digest] - new
commit 1e6664556cc940b7c37adc5a9ec391d91bd1ba2c Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 12:59:55 2013 +0100 - new R-cran-digest.spec | 43 +++ 1 file changed, 43 insertions(+) --- diff --git a/R-cran-digest.spec b/R-cran-digest.spec new file mode 100644 index 000..9994ad1 --- /dev/null +++ b/R-cran-digest.spec @@ -0,0 +1,43 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename digest +Summary: Create cryptographic hash digests of R objects +Name: R-cran-%{modulename} +Version: 0.6.3 +Release: 1 +License: GPL v2 +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: d7913e8091a31885ee2ab798badd7958 +URL: http://cran.fhcrc.org/web/packages/digest/index.html +BuildRequires: R = 2.8.1 +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +The digest package provides a function 'digest()' for the creation of +hash digests of arbitrary R objects (using the md5, sha-1, sha-256 and +crc32 algorithms) permitting easy comparison of R language objects, +as well as a function 'hmac()' to create hash-based message +authentication code. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-digest.git/commitdiff/1e6664556cc940b7c37adc5a9ec391d91bd1ba2c ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-digest] Created branch master
The branch 'master' was created. Summary of new commits: 1e66645... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-ggplot2] Created branch master
The branch 'master' was created. Summary of new commits: 157d6b5... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-ggplot2] - new
commit 157d6b5d872a21b6f88416fef6d60ae242a988a2 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 13:01:01 2013 +0100 - new R-cran-ggplot2.spec | 57 + 1 file changed, 57 insertions(+) --- diff --git a/R-cran-ggplot2.spec b/R-cran-ggplot2.spec new file mode 100644 index 000..ec19f1a --- /dev/null +++ b/R-cran-ggplot2.spec @@ -0,0 +1,57 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename ggplot2 +Summary: Fast hierarchical clustering routines for R and Python +Name: R-cran-%{modulename} +Version: 0.9.3.1 +Release: 1 +License: GPL v2 +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: f01d950c6385750e737ac7eac6260c87 +URL: http://cran.fhcrc.org/web/packages/ggplot2/index.html +BuildRequires: R = 2.8.1 +BuildRequires: R-cran-digest +BuildRequires: R-cran-gtable +BuildRequires: R-cran-reshape2 +BuildRequires: R-cran-proto +BuildRequires: R-cran-plyr +BuildRequires: R-cran-scales +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +Requires: R-cran-digest +Requires: R-cran-gtable +Requires: R-cran-reshape2 +Requires: R-cran-proto +Requires: R-cran-plyr +Requires: R-cran-scales +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +An implementation of the grammar of graphics in R. It combines the +advantages of both base and lattice graphics: conditioning and shared +axes are handled automatically, and you can still build up a plot step +by step from multiple data sources. It also implements a sophisticated +multidimensional conditioning system and a consistent interface to map +data to aesthetic attributes. See the ggplot2 website for more +information, documentation and examples. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-ggplot2.git/commitdiff/157d6b5d872a21b6f88416fef6d60ae242a988a2 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-digest: digest_0.6.3.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/digest_0.6.3.tar.gz d7913e8091a31885ee2ab798badd7958 digest_0.6.3.tar.gz Size: 80083 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-ggplot2: ggplot2_0.9.3.1.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/ggplot2_0.9.3.1.tar.gz f01d950c6385750e737ac7eac6260c87 ggplot2_0.9.3.1.tar.gz Size: 2330942 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-latticeExtra] Created branch master
The branch 'master' was created. Summary of new commits: cfddce5... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cran-latticeExtra] - new
commit cfddce51461829fae2b330797d4f5152873c8acc Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 13:10:22 2013 +0100 - new R-cran-latticeExtra.spec | 39 +++ 1 file changed, 39 insertions(+) --- diff --git a/R-cran-latticeExtra.spec b/R-cran-latticeExtra.spec new file mode 100644 index 000..a377ac4 --- /dev/null +++ b/R-cran-latticeExtra.spec @@ -0,0 +1,39 @@ +%definefversion%(echo %{version} |tr r -) +%definemodulename latticeExtra +Summary: Extra Graphical Utilities Based on Lattice +Name: R-cran-%{modulename} +Version: 0.6r26 +Release: 1 +License: GPL v2+ +Group: Applications/Math +Source0: ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz +# Source0-md5: f17954ceb5333c1a9bd7fe3f175aac6c +URL: http://latticeextra.r-forge.r-project.org/ +BuildRequires: R = 2.8.1 +Requires(post,postun): R = 2.8.1 +Requires(post,postun): perl-base +Requires(post,postun): textutils +Requires: R +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +Extra graphical utilities based on lattice. + +%prep +%setup -q -c + +%build +R CMD build %{modulename} + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library/ +R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/ + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%doc %{modulename}/DESCRIPTION +%{_libdir}/R/library/%{modulename} gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cran-latticeExtra.git/commitdiff/cfddce51461829fae2b330797d4f5152873c8acc ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cran-latticeExtra: latticeExtra_0.6-26.tar.gz
Files fetched: 1 STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/latticeExtra_0.6-26.tar.gz f17954ceb5333c1a9bd7fe3f175aac6c latticeExtra_0.6-26.tar.gz Size: 1295154 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-Gviz] Created branch master
The branch 'master' was created. Summary of new commits: 14195db... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-Gviz] - new
commit 14195db77bc62a65410abd60f66538203d3bd137 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 13:12:28 2013 +0100 - new R-Gviz.spec | 58 ++ 1 file changed, 58 insertions(+) --- diff --git a/R-Gviz.spec b/R-Gviz.spec new file mode 100644 index 000..fb7c15d --- /dev/null +++ b/R-Gviz.spec @@ -0,0 +1,58 @@ +%definepacknameGviz + +Summary: Plotting data and annotation information along genomic coordinates +Name: R-%{packname} +Version: 1.6.0 +Release: 1 +License: Artistic 2.0 +Group: X11/Applications +Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz +# Source0-md5: 0bcff07c6791c32fce881bc3991ff0f7 +URL: http://www.bioconductor.org/packages/release/bioc/html/Gviz.html +BuildRequires: R +BuildRequires: R-biovizBase +BuildRequires: R-cran-latticeExtra +BuildRequires: texlive-latex +Requires: R +Requires: R-biovizBase +Requires: R-cran-latticeExtra +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +Genomic data analyses requires integrated visualization of known +genomic information and new experimental data. Gviz uses the biomaRt +and the rtracklayer packages to perform live annotation queries to +Ensembl and UCSC and translates this to e.g. gene/transcript +structures in viewports of the grid graphics package. This results in +genomic information plotted together with your data. + +%prep +%setup -c -q -n %{packname} + +%build + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library + +%{_bindir}/R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%dir %{_libdir}/R/library/%{packname}/ +%doc %{_libdir}/R/library/%{packname}/doc/ +%doc %{_libdir}/R/library/%{packname}/html/ +%doc %{_libdir}/R/library/%{packname}/DESCRIPTION +%doc %{_libdir}/R/library/%{packname}/NEWS +%{_libdir}/R/library/%{packname}/NAMESPACE +%{_libdir}/R/library/%{packname}/INDEX +%{_libdir}/R/library/%{packname}/Meta/ +%{_libdir}/R/library/%{packname}/R/ +%{_libdir}/R/library/%{packname}/help/ +%{_libdir}/R/library/%{packname}/data/ +%{_libdir}/R/library/%{packname}/extdata/ +%{_libdir}/R/library/%{packname}/lib/ +%{_libdir}/R/library/%{packname}/scripts/ gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-Gviz.git/commitdiff/14195db77bc62a65410abd60f66538203d3bd137 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-Gviz: Gviz_1.6.0.tar.gz
Files fetched: 1 STORED: http://www.bioconductor.org/packages/release/bioc/src/contrib/Gviz_1.6.0.tar.gz 0bcff07c6791c32fce881bc3991ff0f7 Gviz_1.6.0.tar.gz Size: 1965136 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: R-cummeRbund: cummeRbund_2.4.0.tar.gz
Files fetched: 1 STORED: http://bioconductor.org/packages/release/bioc/src/contrib/cummeRbund_2.4.0.tar.gz f6236638b8305fd6ac7c58bd5f9bb89d cummeRbund_2.4.0.tar.gz Size: 2273576 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cummeRbund] - new
commit b8659c1c03f0ca98aaa355c0097d6215bf4abaaf Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 13:16:43 2013 +0100 - new R-cummeRbund.spec | 66 +++ 1 file changed, 66 insertions(+) --- diff --git a/R-cummeRbund.spec b/R-cummeRbund.spec new file mode 100644 index 000..91f8589 --- /dev/null +++ b/R-cummeRbund.spec @@ -0,0 +1,66 @@ +%definepacknamecummeRbund + +Summary: Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data +Name: R-%{packname} +Version: 2.4.0 +Release: 1 +License: LGPL v2+ +Group: Applications/Engineering +Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz +# Source0-md5: f6236638b8305fd6ac7c58bd5f9bb89d +URL: http://bioconductor.org/packages/release/bioc/html/cummeRbund.html +BuildRequires: R +BuildRequires: R-BiocGenerics = 0.3.2 +BuildRequires: R-Gviz +BuildRequires: R-cran-fastcluster +BuildRequires: R-cran-ggplot2 +BuildRequires: R-cran-plyr +BuildRequires: R-cran-reshape2 +BuildRequires: R-cran-RSQLite +BuildRequires: R-rtracklayer +BuildRequires: texlive-latex +Requires: R +Requires: R-BiocGenerics = 0.3.2 +Requires: R-Gviz +Requires: R-cran-fastcluster +Requires: R-cran-ggplot2 +Requires: R-cran-plyr +Requires: R-cran-reshape2 +Requires: R-cran-RSQLite +Requires: R-rtracklayer +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +Allows for persistent storage, access, exploration, and manipulation +of Cufflinks high-throughput sequencing data. In addition, provides +numerous plotting functions for commonly used visualizations. + +%prep +%setup -q -c -n %{packname} + +%build + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library + +R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%dir %{_libdir}/R/library/%{packname} +%doc %{_libdir}/R/library/%{packname}/doc +%doc %{_libdir}/R/library/%{packname}/html +%doc %{_libdir}/R/library/%{packname}/DESCRIPTION +%doc %{_libdir}/R/library/%{packname}/NEWS +%{_libdir}/R/library/%{packname}/INDEX +%{_libdir}/R/library/%{packname}/NAMESPACE +%{_libdir}/R/library/%{packname}/Meta +%{_libdir}/R/library/%{packname}/R +%{_libdir}/R/library/%{packname}/help +%{_libdir}/R/library/%{packname}/data +%{_libdir}/R/library/%{packname}/extdata +%{_libdir}/R/library/%{packname}/reports gitweb: http://git.pld-linux.org/gitweb.cgi/packages/R-cummeRbund.git/commitdiff/b8659c1c03f0ca98aaa355c0097d6215bf4abaaf ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/R-cummeRbund] Created branch master
The branch 'master' was created. Summary of new commits: b8659c1... - new ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/chef] R iproute2 for /sbin/ip and ohai to detect ips properly
commit bb312a69fca36e00cc7db15543b4bd3b9ba21076 Author: Elan Ruusamäe g...@delfi.ee Date: Thu Nov 28 17:59:22 2013 +0200 R iproute2 for /sbin/ip and ohai to detect ips properly chef.spec | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) --- diff --git a/chef.spec b/chef.spec index 107591e..1d21a9b 100644 --- a/chef.spec +++ b/chef.spec @@ -5,7 +5,7 @@ Summary: A systems integration framework, built to bring the benefits of configuration management to your entire infrastructure Name: chef Version: 11.6.2 -Release: 5 +Release: 6 License: Apache v2.0 Group: Development/Languages Source0: http://rubygems.org/downloads/%{name}-%{version}.gem @@ -41,6 +41,7 @@ BuildRequires:ruby-rspec-mocks = 2.12.0 #BuildRequires:ruby-sdoc %endif Requires: diffutils +Requires: iproute2 Requires: lsb-release Requires: poldek = 0.30 Requires: ruby = 1:1.9.3.429-4 gitweb: http://git.pld-linux.org/gitweb.cgi/packages/chef.git/commitdiff/bb312a69fca36e00cc7db15543b4bd3b9ba21076 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/lxc-docker] Adapterise
commit 38bf56600ceb15956a5f3f0b1bf3fba9baad6e44 Author: Aria Stewart aredri...@nbtsc.org Date: Fri Nov 29 08:15:36 2013 -0700 Adapterise lxc-docker.spec | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) --- diff --git a/lxc-docker.spec b/lxc-docker.spec index 0c9f48f..63a2d20 100644 --- a/lxc-docker.spec +++ b/lxc-docker.spec @@ -145,7 +145,7 @@ rm -rf $RPM_BUILD_ROOT %files %defattr(644,root,root,755) %doc README.md CHANGELOG.md CONTRIBUTING.md FIXME LICENSE AUTHORS NOTICE MAINTAINERS -%attr(644,root,root) %{systemdunitdir}/lxc-docker.service +%{systemdunitdir}/lxc-docker.service %attr(754,root,root) /etc/rc.d/init.d/lxc-docker %attr(755,root,root) %{_bindir}/lxc-docker %attr(755,root,root) %{_bindir}/docker gitweb: http://git.pld-linux.org/gitweb.cgi/packages/lxc-docker.git/commitdiff/38bf56600ceb15956a5f3f0b1bf3fba9baad6e44 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/libgit2] - added no-libgit2-test patch (disable patch requiring local libgit2 repository, not present in rele
commit 6bc0cd1c57bab21201e748467140c6f8b8f67194 Author: Jakub Bogusz qbo...@pld-linux.org Date: Fri Nov 29 17:11:45 2013 +0100 - added no-libgit2-test patch (disable patch requiring local libgit2 repository, not present in release tarballs) libgit2-no-libgit2-test.patch | 11 +++ libgit2.spec | 2 ++ 2 files changed, 13 insertions(+) --- diff --git a/libgit2.spec b/libgit2.spec index f8d003a..c907a8a 100644 --- a/libgit2.spec +++ b/libgit2.spec @@ -13,6 +13,7 @@ Group:Libraries Source0: https://github.com/libgit2/libgit2/archive/v%{version}.tar.gz?/%{name}-%{version}.tar.gz # Source0-md5: e35f613a37e11354f34249f2faa68237 Patch0:%{name}-test-online.patch +Patch1:%{name}-no-libgit2-test.patch URL: http://libgit2.github.com/ BuildRequires: cmake = 2.6 BuildRequires: http-parser-devel @@ -51,6 +52,7 @@ Pliki nagłówkowe biblioteki libgit2. %prep %setup -q %patch0 -p1 +%patch1 -p1 %build install -d build diff --git a/libgit2-no-libgit2-test.patch b/libgit2-no-libgit2-test.patch new file mode 100644 index 000..acb5691 --- /dev/null +++ b/libgit2-no-libgit2-test.patch @@ -0,0 +1,11 @@ +--- libgit2-0.20.0/tests/blame/simple.c.orig 2013-11-20 12:53:33.0 +0100 libgit2-0.20.0/tests/blame/simple.c2013-11-29 16:59:19.887747596 +0100 +@@ -130,7 +130,7 @@ + * bf477ed4 include/git2.h 45 (Michael Schubert2012-02-15 00:33:38 +0100 59 + * d12299fe src/git.h 49 (Vicent Martí2010-12-03 22:22:10 +0200 60 + */ +-void test_blame_simple__trivial_libgit2(void) ++/*disable*/ void test_blame_simple__trivial_libgit2(void) + { + git_blame_options opts = GIT_BLAME_OPTIONS_INIT; + git_object *obj; gitweb: http://git.pld-linux.org/gitweb.cgi/packages/libgit2.git/commitdiff/6bc0cd1c57bab21201e748467140c6f8b8f67194 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/dovecot] - up to 2.2.9
commit 13466ff07a0a6a2a90769d2f30ad02f65afd89ae Author: Arkadiusz Miśkiewicz ar...@maven.pl Date: Fri Nov 29 18:23:15 2013 +0100 - up to 2.2.9 dovecot.spec | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) --- diff --git a/dovecot.spec b/dovecot.spec index 91d22e5..ab467d9 100644 --- a/dovecot.spec +++ b/dovecot.spec @@ -10,13 +10,13 @@ Summary: IMAP and POP3 server written with security primarily in mind Summary(pl.UTF-8): Serwer IMAP i POP3 pisany głównie z myślą o bezpieczeństwie Name: dovecot -Version: 2.2.6 +Version: 2.2.9 Release: 1 Epoch: 1 License: MIT (libraries), LGPL v2.1 (the rest) Group: Networking/Daemons Source0: http://dovecot.org/releases/2.2/%{name}-%{version}.tar.gz -# Source0-md5: db65988ef2e6889dd8b49c132b21fc8f +# Source0-md5: 6e620a4020b7cc9855cbb304a63efc87 Source1: %{name}.pamd Source2: %{name}.init Source3: %{name}.sysconfig gitweb: http://git.pld-linux.org/gitweb.cgi/packages/dovecot.git/commitdiff/13466ff07a0a6a2a90769d2f30ad02f65afd89ae ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: dovecot: dovecot-2.2.9.tar.gz
Files fetched: 1 STORED: http://dovecot.org/releases/2.2/dovecot-2.2.9.tar.gz 6e620a4020b7cc9855cbb304a63efc87 dovecot-2.2.9.tar.gz Size: 4540858 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/mozilla-firefox] - up to 25.0.1
commit 329a2b8758f06f101e9ad5d9bc8034810f441868 Author: Jakub Bogusz qbo...@pld-linux.org Date: Fri Nov 29 18:41:04 2013 +0100 - up to 25.0.1 mozilla-firefox-941837.patch | 20 mozilla-firefox.spec | 6 -- 2 files changed, 24 insertions(+), 2 deletions(-) --- diff --git a/mozilla-firefox.spec b/mozilla-firefox.spec index b5f2661..3d30abf 100644 --- a/mozilla-firefox.spec +++ b/mozilla-firefox.spec @@ -21,17 +21,18 @@ Summary: Firefox Community Edition web browser Summary(pl.UTF-8): Firefox Community Edition - przeglądarka WWW Name: mozilla-firefox -Version: 25.0 +Version: 25.0.1 Release: 1 License: MPL 1.1 or GPL v2+ or LGPL v2.1+ Group: X11/Applications/Networking Source0: http://releases.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/source/firefox-%{version}.source.tar.bz2 -# Source0-md5: 90ac047e83079a9046192c732e195329 +# Source0-md5: b5b57d3ea937a339e0ed7ebea604b430 Source3: %{name}.desktop Source4: %{name}.sh Source5: vendor.js Source6: vendor-ac.js Patch0:%{name}-branding.patch +Patch1:%{name}-941837.patch Patch7:%{name}-prefs.patch Patch9:%{name}-no-subshell.patch Patch11: %{name}-middle_click_paste.patch @@ -139,6 +140,7 @@ mv -f mozilla-release mozilla cd mozilla %patch0 -p1 +%patch1 -p1 %patch7 -p1 %patch9 -p2 %patch11 -p2 diff --git a/mozilla-firefox-941837.patch b/mozilla-firefox-941837.patch new file mode 100644 index 000..8e85cf6 --- /dev/null +++ b/mozilla-firefox-941837.patch @@ -0,0 +1,20 @@ +--- a/js/src/gc/Memory.cpp.orig2013-11-13 01:13:53.0 +0100 a/js/src/gc/Memory.cpp 2013-11-28 05:03:31.160133711 +0100 +@@ -63,7 +63,7 @@ + p = VirtualAlloc(NULL, size * 2, MEM_RESERVE, PAGE_READWRITE); + if (!p) + return NULL; +-void *chunkStart = (void *)(uintptr_t(p) + (alignment - (uintptr_t(p) % alignment))); ++void *chunkStart = (void *)AlignBytes(uintptr_t(p), alignment); + UnmapPages(rt, p, size * 2); + p = VirtualAlloc(chunkStart, size, MEM_COMMIT | MEM_RESERVE, PAGE_READWRITE); + +@@ -335,7 +335,7 @@ + uintptr_t offset = uintptr_t(region) % alignment; + JS_ASSERT(offset reqSize - size); + +-void *front = (void *)(uintptr_t(region) + (alignment - offset)); ++void *front = (void *)AlignBytes(uintptr_t(region), alignment); + void *end = (void *)(uintptr_t(front) + size); + if (front != region) + JS_ALWAYS_TRUE(0 == munmap(region, alignment - offset)); gitweb: http://git.pld-linux.org/gitweb.cgi/packages/mozilla-firefox.git/commitdiff/329a2b8758f06f101e9ad5d9bc8034810f441868 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: readline: readline-6.2.tar.gz
Files fetched: 0 ALREADY GOT: http://ftp.gnu.org/gnu/readline/readline-6.2.tar.gz 67948acb2ca081f23359d0256e9a271c readline-6.2.tar.gz -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: python-sphinxcontrib-issuetracker: sphinxcontrib-issuetracker-0.11.tar.gz python-objects.inv sphinx-objects.inv
Files fetched: 0 ALREADY GOT: http://pypi.python.org/packages/source/s/sphinxcontrib-issuetracker/sphinxcontrib-issuetracker-0.11.tar.gz 69c2f0e5770c5d7bad73f60f8d764e28 sphinxcontrib-issuetracker-0.11.tar.gz ALREADY GOT: http://docs.python.org/objects.inv#/python-objects.inv 9128e774ec21dcd62dc5bca61cdd91ee python-objects.inv ALREADY GOT: http://sphinx.pocoo.org/objects.inv#/sphinx-objects.inv 4db0b6eb4e1f4635ad02669e5b1ba15e sphinx-objects.inv -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: truecrypt: truecrypt-7.1a.tar.gz wxWidgets-2.8.12.tar.bz2 pkcs11.h pkcs11f.h pkcs11t.h
Files fetched: 0 ALREADY GOT: http://www.truecrypt.org/download/transient/ac30ffc056648e240aaa/TrueCrypt%207.1a%20Source.tar.gz#/truecrypt-7.1a.tar.gz 102d9652681db11c813610882332ae48 truecrypt-7.1a.tar.gz ALREADY GOT: http://downloads.sourceforge.net/wxwindows/wxWidgets-2.8.12.tar.bz2 4103e37e277abeb8aee607b990c215c4 wxWidgets-2.8.12.tar.bz2 ALREADY GOT: ftp://ftp.rsasecurity.com/pub/pkcs/pkcs-11/v2-20/pkcs11.h 713ac88786b436a5df02bface7dfce45 pkcs11.h ALREADY GOT: ftp://ftp.rsasecurity.com/pub/pkcs/pkcs-11/v2-20/pkcs11f.h 652434a5793eb14aae7b5baa07f6cfc7 pkcs11f.h ALREADY GOT: ftp://ftp.rsasecurity.com/pub/pkcs/pkcs-11/v2-20/pkcs11t.h aeebc839b98e672982abf566e6a25525 pkcs11t.h -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: sipp: ERRORS: sipp-3.3.tar.xz
wget -nv --no-check-certificate --user-agent=PLD/distfiles -O ./tmp/a28ab081-5d16-4dbd-b757-9777f3bf84d2/f0c4f472fa86de8a528cb91616323617/sipp-3.3.tar.xz http://dl.sourceforge.net/sipp/sipp-3.3.tar.xz: exited with code 4 (0x00) FATAL: http://dl.sourceforge.net/sipp/sipp-3.3.tar.xz (f0c4f472fa86de8a528cb91616323617) was not fetched correctly (wget -nv --no-check-certificate --user-agent=PLD/distfiles -O ./tmp/a28ab081-5d16-4dbd-b757-9777f3bf84d2/f0c4f472fa86de8a528cb91616323617/sipp-3.3.tar.xz http://dl.sourceforge.net/sipp/sipp-3.3.tar.xz: ): file fetched but has 0 length Files fetched: 0 -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: dokuwiki-plugin-include: include-20120902.tgz
Files fetched: 0 ALREADY GOT: http://github.com/dokufreaks/plugin-include/tarball/master#/include-20120902.tgz 3ff6adff1413be3be85041e291044a9d include-20120902.tgz -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: grive:
Files fetched: 0 -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/mozilla-firefox-languages] - up to 25.0.1
commit 520f80d675ebe32134f7a0d8a9a2bbd2b6731925 Author: Jakub Bogusz qbo...@pld-linux.org Date: Fri Nov 29 19:50:55 2013 +0100 - up to 25.0.1 mozilla-firefox-languages.spec | 180 - 1 file changed, 90 insertions(+), 90 deletions(-) --- diff --git a/mozilla-firefox-languages.spec b/mozilla-firefox-languages.spec index 3621471..a0d2f35 100644 --- a/mozilla-firefox-languages.spec +++ b/mozilla-firefox-languages.spec @@ -12,188 +12,188 @@ curl -s $U | sed -ne 's,.*href=\([^]\+\)/.*,'$U'xpi/\1.xpi,p' Summary: Language packs for Firefox Summary(pl.UTF-8): Pakiety językowe dla Firefoksa Name: mozilla-firefox-languages -Version: 25.0 +Version: 25.0.1 Release: 1 License: MPL 1.1 or GPL v2+ or LGPL v2.1+ Group: I18n Source0: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/ach.xpi -# Source0-md5: a7ec287c35b7a599735a9b1cb20a3d80 +# Source0-md5: 23a3cfeadb501acbcac73d8965f7db97 Source1: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/af.xpi -# Source1-md5: fe7fc95d1df1dbf8af9109c0b3084b8b +# Source1-md5: e7b3cf1c7931fdf4cdc237fb867a687f Source2: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/ak.xpi -# Source2-md5: 2d60d076d18176368e5a166e92d81231 +# Source2-md5: 579bed5883571b999c00cb40ead6cf28 Source3: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/ar.xpi -# Source3-md5: 6ff428e3ddb78c5164c8cfa63f029640 +# Source3-md5: d051531a144e058a0d289ce32c27e515 Source4: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/as.xpi -# Source4-md5: 3be2b3a6a3f52e8daa405eb7ae73f408 +# Source4-md5: a8a646ea5ba7f1027ee4dc5b524c96a8 Source5: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/ast.xpi -# Source5-md5: 5d160b57fcbe93f826c899ab01a9a3ff +# Source5-md5: 0032f9b809a1c5dc3e9be171d584209b Source6: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/be.xpi -# Source6-md5: f8ea9e30c70a20f44df802ed7deaed4e +# Source6-md5: ef3286f6d26054f4661d55a930a20d85 Source7: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/bg.xpi -# Source7-md5: c9afe91757db0410ac2622e9e307066d +# Source7-md5: 75af48dd7140a7feb4bba28c84d8aadb Source8: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/bn-BD.xpi -# Source8-md5: d07966c3e78b4c1218ad8ddf74cef6c4 +# Source8-md5: 25a4c574be8e4a9e3ee557b0e337 Source9: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/bn-IN.xpi -# Source9-md5: 9d5837a41e0b542ab067bd32b30bc1c9 +# Source9-md5: 84ad1f1569df66e3a654b8b32aa1633b Source10: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/br.xpi -# Source10-md5:597f6e7df761ea7e62186b8bf35fb3fa +# Source10-md5:5a5cbb43a1f4f3e5cd0d949bdebdb9c4 Source11: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/bs.xpi -# Source11-md5:9859310ecc3fc180dcdbcb4168258467 +# Source11-md5:066b8c64af7832019710af1dd528ac6e Source12: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/ca.xpi -# Source12-md5:021c5b909e8887622dfc76ef8615f846 +# Source12-md5:eedd3df2aef27bf18fc6809ebf59d2f9 Source13: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/cs.xpi -# Source13-md5:80ce583201c24a03b2c31122d15ca6dd +# Source13-md5:a4896902f6b00543f1fd316853240ae2 Source14: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/csb.xpi -# Source14-md5:efd7e29a6fa470249710667bfd6bb9b4 +# Source14-md5:fdcd74b431ab34ede28b1f1caeaf0a1a Source15: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/cy.xpi -# Source15-md5:e7d8f053d6ae5c40d7e26dd0c89d3118 +# Source15-md5:ea55b13678e4de8e065f15a6bcf1efe7 Source16: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/da.xpi -# Source16-md5:984012fb41e96b0b60f0d571ab7f0241 +# Source16-md5:13f3458add38bda264eed222d6f33c9b Source17: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/de.xpi -# Source17-md5:d60e8a98187dfaa280fc00be53ee31c2 +# Source17-md5:23c893eb92d2fa8992ef79e00884b656 Source18: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/el.xpi -# Source18-md5:a334ef9098155e44e925fe7804c15000 +# Source18-md5:22a8c5b0d53c0feb1e615eb0098b7895 Source19: http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/en-GB.xpi -# Source19-md5:
[packages/perl-Locale-US] - release 2 (by relup.sh)
commit 2cd3ecbd34a68f1f438fdfacdbca9bf57c188083 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 21:14:36 2013 +0100 - release 2 (by relup.sh) perl-Locale-US.spec | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) --- diff --git a/perl-Locale-US.spec b/perl-Locale-US.spec index 44c627e..5bd5220 100644 --- a/perl-Locale-US.spec +++ b/perl-Locale-US.spec @@ -9,7 +9,7 @@ Summary:Two letter codes for state identification in the United States and vice Summary(pl.UTF-8): Dwuliterowe kody do identyfikacji stanów w USA Name: perl-Locale-US Version: 2.112150 -Release: 1 +Release: 2 # same as perl License: GPL v1+ or Artistic Group: Development/Languages/Perl gitweb: http://git.pld-linux.org/gitweb.cgi/packages/perl-Locale-US.git/commitdiff/2cd3ecbd34a68f1f438fdfacdbca9bf57c188083 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/polkit] - release 2 (by relup.sh)
commit 6894c8e14354cd4673b657d6029a45482d35bbd8 Author: Jan Rękorajski bagg...@pld-linux.org Date: Fri Nov 29 22:08:54 2013 +0100 - release 2 (by relup.sh) polkit.spec | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) --- diff --git a/polkit.spec b/polkit.spec index c69448d..b3529cc 100644 --- a/polkit.spec +++ b/polkit.spec @@ -7,7 +7,7 @@ Summary:A framework for defining policy for system-wide components Summary(pl.UTF-8): Szkielet do definiowania polityki dla komponentów systemowych Name: polkit Version: 0.112 -Release: 1 +Release: 2 License: LGPL v2+ Group: Libraries Source0: http://www.freedesktop.org/software/polkit/releases/%{name}-%{version}.tar.gz gitweb: http://git.pld-linux.org/gitweb.cgi/packages/polkit.git/commitdiff/6894c8e14354cd4673b657d6029a45482d35bbd8 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/rcs] - updated to 5.9.2
commit 756767156677637b4efead51fe0afa19bcc76711 Author: Jakub Bogusz qbo...@pld-linux.org Date: Fri Nov 29 22:27:46 2013 +0100 - updated to 5.9.2 rcs.spec | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) --- diff --git a/rcs.spec b/rcs.spec index ce70098..96e4671 100644 --- a/rcs.spec +++ b/rcs.spec @@ -6,12 +6,12 @@ Summary(pl.UTF-8):RCS - system kontroli wersji Summary(pt_BR.UTF-8): RCS - sistema de controle de versões Summary(tr.UTF-8): Sürüm denetleme sistemi Name: rcs -Version: 5.9.1 +Version: 5.9.2 Release: 1 License: GPL v3+ Group: Development/Version Control Source0: http://ftp.gnu.org/gnu/rcs/%{name}-%{version}.tar.xz -# Source0-md5: 43af6f4cce2c42bb4572691bb97e4396 +# Source0-md5: 2af60f0baa0262888d229c2f0f5b8390 Source1: http://www.mif.pg.gda.pl/homepages/ankry/man-PLD/%{name}-non-english-man-pages.tar.bz2 # Source1-md5: ba094b833436afc14ac1679a78e50da5 Patch0:%{name}-debian.patch gitweb: http://git.pld-linux.org/gitweb.cgi/packages/rcs.git/commitdiff/756767156677637b4efead51fe0afa19bcc76711 ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: rcs: rcs-5.9.2.tar.xz rcs-non-english-man-pages.tar.bz2
Files fetched: 1 STORED: http://ftp.gnu.org/gnu/rcs/rcs-5.9.2.tar.xz 2af60f0baa0262888d229c2f0f5b8390 rcs-5.9.2.tar.xz Size: 795096 bytes ALREADY GOT: http://www.mif.pg.gda.pl/homepages/ankry/man-PLD/rcs-non-english-man-pages.tar.bz2 ba094b833436afc14ac1679a78e50da5 rcs-non-english-man-pages.tar.bz2 -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
[packages/libgoffice] - updated to 0.10.9
commit fa6a6f8c7bf649ecdc9f0a813b6b4588c57b304f Author: Jakub Bogusz qbo...@pld-linux.org Date: Fri Nov 29 22:53:06 2013 +0100 - updated to 0.10.9 libgoffice.spec | 18 -- 1 file changed, 12 insertions(+), 6 deletions(-) --- diff --git a/libgoffice.spec b/libgoffice.spec index 60e7c03..9a54194 100644 --- a/libgoffice.spec +++ b/libgoffice.spec @@ -1,15 +1,19 @@ +# +# Conditional build: +%bcond_without static_libs # static library +# %defineorgname goffice %defineapi_version 0.10 # Summary: Glib/Gtk+ set of document centric objects and utilities Summary(pl.UTF-8): Zestaw zorientowanych dokumentowo obiektów i narzędzi Glib/Gtk+ Name: libgoffice -Version: 0.10.4 +Version: 0.10.9 Release: 1 License: GPL v2+ Group: Libraries Source0: http://ftp.gnome.org/pub/GNOME/sources/goffice/0.10/%{orgname}-%{version}.tar.xz -# Source0-md5: 93f06f8ee70d2601b158762b0a543927 +# Source0-md5: 98e540dc4273eca088d31005fcf397d9 URL: http://www.gtk.org/ BuildRequires: autoconf = 2.54 BuildRequires: automake @@ -88,10 +92,10 @@ Dokumentacja API biblioteki GOffice. %{__autoheader} %{__automake} %configure \ - --enable-static \ - --enable-introspection=yes \ - --with-html-dir=%{_gtkdocdir} \ - --disable-silent-rules + --enable-introspection \ + --disable-silent-rules \ + %{?with_static_libs:--enable-static} \ + --with-html-dir=%{_gtkdocdir} %{__make} %install @@ -134,9 +138,11 @@ rm -rf $RPM_BUILD_ROOT %{_pkgconfigdir}/libgoffice-%{api_version}.pc %{_datadir}/gir-1.0/GOffice-%{api_version}.gir +%if %{with static_libs} %files static %defattr(644,root,root,755) %{_libdir}/libgoffice-%{api_version}.a +%endif %files apidocs %defattr(644,root,root,755) gitweb: http://git.pld-linux.org/gitweb.cgi/packages/libgoffice.git/commitdiff/fa6a6f8c7bf649ecdc9f0a813b6b4588c57b304f ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit
DISTFILES: libgoffice: goffice-0.10.9.tar.xz
Files fetched: 1 STORED: http://ftp.gnome.org/pub/GNOME/sources/goffice/0.10/goffice-0.10.9.tar.xz 98e540dc4273eca088d31005fcf397d9 goffice-0.10.9.tar.xz Size: 2214120 bytes -- Virtually Yours: distfiles. ___ pld-cvs-commit mailing list pld-cvs-commit@lists.pld-linux.org http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit