[packages/mysql] - rel 6; back to 5.5 behaviour of secure_auth

2013-11-29 Thread arekm
commit 610a5a467da5ed3fd04eac5ecacffdb1a8257b74
Author: Arkadiusz Miśkiewicz ar...@maven.pl
Date:   Fri Nov 29 11:18:11 2013 +0100

- rel 6; back to 5.5 behaviour of secure_auth

 mysql-no-default-secure-auth.patch | 98 ++
 mysql.spec |  4 +-
 2 files changed, 101 insertions(+), 1 deletion(-)
---
diff --git a/mysql.spec b/mysql.spec
index a480a51..0ad5dfe 100644
--- a/mysql.spec
+++ b/mysql.spec
@@ -35,7 +35,7 @@ Summary(uk.UTF-8):MySQL - швидкий SQL-сервер
 Summary(zh_CN.UTF-8):  MySQL数据库服务器
 Name:  mysql
 Version:   5.6.14
-Release:   5
+Release:   6
 License:   GPL + MySQL FLOSS Exception
 Group: Applications/Databases
 # Source0Download: http://dev.mysql.com/downloads/mysql/5.5.html#downloads
@@ -60,6 +60,7 @@ Source14: my.cnf
 Patch1:%{name}-versioning.patch
 Patch2:%{name}hotcopy-5.0-5.5.patch
 Patch3:bug-67402.patch
+Patch4:mysql-no-default-secure-auth.patch
 # from fedora
 Patch6:%{name}-system-users.patch
 
@@ -493,6 +494,7 @@ mv sphinx-*/mysqlse storage/sphinx
 %patch1 -p1
 %patch2 -p1
 %patch3 -p1
+%patch4 -p1
 
 %patch6 -p1
 
diff --git a/mysql-no-default-secure-auth.patch 
b/mysql-no-default-secure-auth.patch
new file mode 100644
index 000..26cf10c
--- /dev/null
+++ b/mysql-no-default-secure-auth.patch
@@ -0,0 +1,98 @@
+--- Percona-Server-5.6.14-rel62.0/client/mysql.cc~ 2013-10-22 
09:42:41.0 +0200
 Percona-Server-5.6.14-rel62.0/client/mysql.cc  2013-11-23 
13:20:56.986861400 +0100
+@@ -152,7 +152,7 @@
+  vertical=0, line_numbers=1, column_names=1,opt_html=0,
+opt_xml=0,opt_nopager=1, opt_outfile=0, named_cmds= 0,
+  tty_password= 0, opt_nobeep=0, opt_reconnect=1,
+- opt_secure_auth= TRUE,
++ opt_secure_auth= 0,
+default_pager_set= 0, opt_sigint_ignore= 0,
+auto_vertical_output= 0,
+show_warnings= 0, executing_query= 0, interrupted_query= 0,
+--- Percona-Server-5.6.14-rel62.0/client/mysql.cc~ 2013-11-23 
14:34:06.0 +0100
 Percona-Server-5.6.14-rel62.0/client/mysql.cc  2013-11-23 
15:25:56.195617871 +0100
+@@ -1737,7 +1737,7 @@
+1, ULONG_MAX, 0, 1, 0},
+   {secure-auth, OPT_SECURE_AUTH, Refuse client connecting to server if it
+  uses old (pre-4.1.1) protocol., opt_secure_auth,
+-opt_secure_auth, 0, GET_BOOL, NO_ARG, 1, 0, 0, 0, 0, 0},
++opt_secure_auth, 0, GET_BOOL, NO_ARG, 0, 0, 0, 0, 0, 0},
+   {server-arg, OPT_SERVER_ARG, Send embedded server this as a parameter.,
+0, 0, 0, GET_STR, REQUIRED_ARG, 0, 0, 0, 0, 0, 0},
+   {show-warnings, OPT_SHOW_WARNINGS, Show warnings after every statement.,
+--- Percona-Server-5.6.14-rel62.0/sql/sys_vars.cc~ 2013-11-23 
15:30:45.0 +0100
 Percona-Server-5.6.14-rel62.0/sql/sys_vars.cc  2013-11-23 
15:30:50.922370696 +0100
+@@ -2655,9 +2655,7 @@
+Disallow authentication for accounts that have old (pre-4.1) 
+passwords,
+GLOBAL_VAR(opt_secure_auth), CMD_LINE(OPT_ARG, OPT_SECURE_AUTH),
+-   DEFAULT(TRUE),
+-   NO_MUTEX_GUARD, NOT_IN_BINLOG,
+-   ON_CHECK(on_check_opt_secure_auth)
++   DEFAULT(FALSE)
+);
+ 
+ static Sys_var_charptr Sys_secure_file_priv(
+MySQL 5.6.11 does not allow pre-4.1.1 password hashes although the server is
+started with skip-secure-auth option (secure-auth mode disabled), this patch
+enables this feature again, it's a mysql_init() backport from MySQL 5.6.10.
+
+mysql SHOW VARIABLES LIKE 'secure_auth' ;
++---+---+
+| Variable_name | Value |
++---+---+
+| secure_auth   | OFF   |
++---+---+
+
+$ mysql -uexample -pexample test
+ERROR 2049 (HY000): Connection using old (pre-4.1.1) authentication protocol 
refused (client option 'secure_auth' enabled)
+
+This bug has been also reported by Jørgen Thomsen: 
http://bugs.mysql.com/bug.php?id=69027
+
+Santi Saez 2013-04-22 / powerstack.org
+
+diff -urN mysql-5.6.11.orig/sql-common/client.c 
mysql-5.6.11/sql-common/client.c
+--- mysql-5.6.11.orig/sql-common/client.c  2013-04-05 14:27:18.0 
+0200
 mysql-5.6.11/sql-common/client.c   2013-04-22 23:11:45.754001616 
+0200
+@@ -4747,27 +4747,10 @@
+ 
+   if (mysql-passwd[0])
+   {
+-/*
+-   If --secure-auth option is used, throw an error.
+-   Note that, we do not need to check for CLIENT_SECURE_CONNECTION
+-   capability of server. If server is not capable of handling secure
+-   connections, we would have raised error before reaching here.
+-
+-   TODO: Change following code to access MYSQL structure through
+-   client-side plugin service.
+-*/
+-if (mysql-options.secure_auth)
+-{
+-  set_mysql_error(mysql, CR_SECURE_AUTH, unknown_sqlstate);
++char scrambled[SCRAMBLE_LENGTH_323 + 1];
++scramble_323(scrambled, 

[packages/VirtualBox] - updated BRs

2013-11-29 Thread charles
commit df3c39bd4d7aa68dd5caead72ee53581b0619c81
Author: Karol Krenski char...@pld-linux.org
Date:   Fri Nov 29 11:23:05 2013 +0100

- updated BRs

 VirtualBox.spec | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)
---
diff --git a/VirtualBox.spec b/VirtualBox.spec
index 3b6682e..21be83a 100644
--- a/VirtualBox.spec
+++ b/VirtualBox.spec
@@ -114,7 +114,7 @@ BuildRequires:  bin86
 BuildRequires: curl-devel
 BuildRequires: device-mapper-devel
 %{?with_doc:BuildRequires: docbook-dtd44-xml}
-BuildRequires: fltk-devel
+%{?with_lightdm:BuildRequires: fltk-devel}
 BuildRequires: gcc = 5:3.2.3
 %{?with_webservice:BuildRequires:  gsoap-devel}
 BuildRequires: issue
@@ -127,6 +127,7 @@ BuildRequires:  libstdc++-devel = 5:3.2.3
 BuildRequires: libstdc++-static = 5:3.2.3
 BuildRequires: libuuid-devel
 BuildRequires: libvncserver-devel = 0.9.9
+BuildRequires: libvpx-devel
 BuildRequires: libxml2-devel = 2.6.26
 BuildRequires: libxslt-devel = 1.1.17
 BuildRequires: libxslt-progs = 1.1.17


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/VirtualBox.git/commitdiff/df3c39bd4d7aa68dd5caead72ee53581b0619c81

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/libmbfl] - release 4 (by relup.sh)

2013-11-29 Thread baggins
commit 7cf36e004d8a0a74725ac1b1a823310010d86e7d
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 11:27:34 2013 +0100

- release 4 (by relup.sh)

 libmbfl.spec | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)
---
diff --git a/libmbfl.spec b/libmbfl.spec
index b93f26b..462dde5 100644
--- a/libmbfl.spec
+++ b/libmbfl.spec
@@ -6,7 +6,7 @@ Summary:Streamable kanji code filter and converter
 Summary(pl.UTF-8): Strumieniowy filtr i konwerter kodu kanji
 Name:  libmbfl
 Version:   1.3.2
-Release:   3
+Release:   4
 License:   LGPL 2.1
 Group: Libraries
 Source0:   
https://github.com/moriyoshi/libmbfl/archive/8d14bff/%{name}-%{version}.tar.gz


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/libmbfl.git/commitdiff/7cf36e004d8a0a74725ac1b1a823310010d86e7d

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-Formula] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  e1545ba... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-Formula] - new

2013-11-29 Thread baggins
commit e1545ba58e35f5688bf4c866441c174870c18428
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 11:47:53 2013 +0100

- new

 R-cran-Formula.spec | 51 +++
 1 file changed, 51 insertions(+)
---
diff --git a/R-cran-Formula.spec b/R-cran-Formula.spec
new file mode 100644
index 000..79815c7
--- /dev/null
+++ b/R-cran-Formula.spec
@@ -0,0 +1,51 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  Formula
+Summary:   Extended Model Formulas
+Name:  R-cran-%{modulename}
+Version:   1.1r1
+Release:   1
+License:   GPL v2+
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: bf47f043979dc1587c442aca1d8ad4fa
+URL:   http://socserv.socsci.mcmaster.ca/jfox/
+BuildRequires: R = 2.8.1
+BuildRequires: texlive-tex-thumbpdf
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Infrastructure for extended formulas with multiple parts on
+the right-hand side and/or multiple responses on the left-hand side.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%post
+(cd %{_libdir}/R/library; umask 022; cat */CONTENTS  
../doc/html/search/index.txt
+ R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --index)
+
+%postun
+if [ -f %{_libdir}/R/bin/Rcmd ];then
+   (cd %{_libdir}/R/library; umask 022; cat */CONTENTS  
../doc/html/search/index.txt
+   R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl 
--index)
+fi
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-Formula.git/commitdiff/e1545ba58e35f5688bf4c866441c174870c18428

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-Formula: Formula_1.1-1.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/Formula_1.1-1.tar.gz
bf47f043979dc1587c442aca1d8ad4fa  Formula_1.1-1.tar.gz
Size: 148430 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-Formula] - drop non-working post scriptlets - rel 2

2013-11-29 Thread baggins
commit c33096047203ff0e1eb78ca3a32213973fc2492e
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 11:53:46 2013 +0100

- drop non-working post scriptlets
- rel 2

 R-cran-Formula.spec | 12 +---
 1 file changed, 1 insertion(+), 11 deletions(-)
---
diff --git a/R-cran-Formula.spec b/R-cran-Formula.spec
index 79815c7..837cfa1 100644
--- a/R-cran-Formula.spec
+++ b/R-cran-Formula.spec
@@ -3,7 +3,7 @@
 Summary:   Extended Model Formulas
 Name:  R-cran-%{modulename}
 Version:   1.1r1
-Release:   1
+Release:   2
 License:   GPL v2+
 Group: Applications/Math
 Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
@@ -35,16 +35,6 @@ R CMD INSTALL %{modulename} 
--library=$RPM_BUILD_ROOT%{_libdir}/R/library/
 %clean
 rm -rf $RPM_BUILD_ROOT
 
-%post
-(cd %{_libdir}/R/library; umask 022; cat */CONTENTS  
../doc/html/search/index.txt
- R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --index)
-
-%postun
-if [ -f %{_libdir}/R/bin/Rcmd ];then
-   (cd %{_libdir}/R/library; umask 022; cat */CONTENTS  
../doc/html/search/index.txt
-   R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl 
--index)
-fi
-
 %files
 %defattr(644,root,root,755)
 %doc %{modulename}/DESCRIPTION


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-Formula.git/commitdiff/c33096047203ff0e1eb78ca3a32213973fc2492e

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-Hmisc] - new

2013-11-29 Thread baggins
commit 4807c88ef7189e91a9a3294f41e5caaf64d9a9d1
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 11:55:16 2013 +0100

- new

 R-cran-Hmisc.spec | 46 ++
 1 file changed, 46 insertions(+)
---
diff --git a/R-cran-Hmisc.spec b/R-cran-Hmisc.spec
new file mode 100644
index 000..2216be5
--- /dev/null
+++ b/R-cran-Hmisc.spec
@@ -0,0 +1,46 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  Hmisc
+Summary:   Harrell Miscellaneous
+Name:  R-cran-%{modulename}
+Version:   3.13r0
+Release:   1
+License:   GPL v2+
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: 5ed3c94c11f67244be99922730495206
+URL:   http://socserv.socsci.mcmaster.ca/jfox/
+BuildRequires: R = 2.8.1
+BuildRequires: R-cran-Formula
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+Requires:  R-cran-Formula
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+The Hmisc package contains many functions useful for data analysis,
+high-level graphics, utility operations, functions for computing
+sample size and power, importing datasets, imputing missing values,
+advanced table making, variable clustering, character string
+manipulation, conversion of S objects to LaTeX code, and recoding
+variables.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-Hmisc.git/commitdiff/4807c88ef7189e91a9a3294f41e5caaf64d9a9d1

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-Hmisc] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  4807c88... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-Hmisc: Hmisc_3.13-0.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/Hmisc_3.13-0.tar.gz
5ed3c94c11f67244be99922730495206  Hmisc_3.13-0.tar.gz
Size: 587751 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-dichromat] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  aa9be4b... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-dichromat] - new

2013-11-29 Thread baggins
commit aa9be4b001d6d42fdc26de3860209d2ca3340587
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 11:58:49 2013 +0100

- new

 R-cran-dichromat.spec | 40 
 1 file changed, 40 insertions(+)
---
diff --git a/R-cran-dichromat.spec b/R-cran-dichromat.spec
new file mode 100644
index 000..34f995d
--- /dev/null
+++ b/R-cran-dichromat.spec
@@ -0,0 +1,40 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  dichromat
+Summary:   Color Schemes for Dichromats
+Name:  R-cran-%{modulename}
+Version:   2.0r0
+Release:   1
+License:   GPL v2
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: 84e194ac95a69763d740947a7ee346a6
+URL:   http://socserv.socsci.mcmaster.ca/jfox/
+BuildRequires: R = 2.8.1
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Collapse red-green or green-blue distinctions to simulate the effects
+of different types of color-blindness.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-dichromat.git/commitdiff/aa9be4b001d6d42fdc26de3860209d2ca3340587

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-dichromat: dichromat_2.0-0.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/dichromat_2.0-0.tar.gz
84e194ac95a69763d740947a7ee346a6  dichromat_2.0-0.tar.gz
Size: 84320 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-labeling] - new

2013-11-29 Thread baggins
commit 85704b4e69fa7d6b681849a86d246e11438f2844
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:07:41 2013 +0100

- new

 R-cran-labeling.spec | 39 +++
 1 file changed, 39 insertions(+)
---
diff --git a/R-cran-labeling.spec b/R-cran-labeling.spec
new file mode 100644
index 000..91ada69
--- /dev/null
+++ b/R-cran-labeling.spec
@@ -0,0 +1,39 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  labeling
+Summary:   Axis Labeling
+Name:  R-cran-%{modulename}
+Version:   0.2
+Release:   1
+License:   MIT
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: 8df4dd1ddea128d7e0ac2bf266c66d59
+URL:   http://cran.fhcrc.org/web/packages/labeling/index.html
+BuildRequires: R = 2.8.1
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Provides a range of axis labeling algorithms.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-labeling.git/commitdiff/85704b4e69fa7d6b681849a86d246e11438f2844

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-labeling] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  85704b4... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-labeling: labeling_0.2.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/labeling_0.2.tar.gz
8df4dd1ddea128d7e0ac2bf266c66d59  labeling_0.2.tar.gz
Size: 9998 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-stringr] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  11842e6... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-stringr] - new

2013-11-29 Thread baggins
commit 11842e66d3caae9843c4a6d1c45e3a94e4a9f79f
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:10:47 2013 +0100

- new

 R-cran-stringr.spec | 44 
 1 file changed, 44 insertions(+)
---
diff --git a/R-cran-stringr.spec b/R-cran-stringr.spec
new file mode 100644
index 000..38d1cf2
--- /dev/null
+++ b/R-cran-stringr.spec
@@ -0,0 +1,44 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  stringr
+Summary:   Make it easier to work with strings
+Name:  R-cran-%{modulename}
+Version:   0.6.2
+Release:   1
+License:   MIT
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: 452628504e0910c1d0b1756370716f87
+URL:   http://cran.fhcrc.org/web/packages/stringr/index.html
+BuildRequires: R = 2.8.1
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+stringr is a set of simple wrappers that make R's string functions
+more consistent, simpler and easier to use. It does this by ensuring
+that: function and argument names (and positions) are consistent,
+all functions deal with NA's and zero length character appropriately,
+and the output data structures from each function matches the input
+data structures of other functions.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-stringr.git/commitdiff/11842e66d3caae9843c4a6d1c45e3a94e4a9f79f

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-stringr: stringr_0.6.2.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/stringr_0.6.2.tar.gz
452628504e0910c1d0b1756370716f87  stringr_0.6.2.tar.gz
Size: 20636 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-colorspace] - new

2013-11-29 Thread baggins
commit a54af15fa1f4f1a3c978d183791828061fd56868
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:23:58 2013 +0100

- new

 R-cran-colorspace.spec | 42 ++
 1 file changed, 42 insertions(+)
---
diff --git a/R-cran-colorspace.spec b/R-cran-colorspace.spec
new file mode 100644
index 000..930434d
--- /dev/null
+++ b/R-cran-colorspace.spec
@@ -0,0 +1,42 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  colorspace
+Summary:   Color Space Manipulation
+Name:  R-cran-%{modulename}
+Version:   1.2r4
+Release:   1
+License:   BSD
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: 1f9a05587ffae27fc3e4da7503d016fc
+URL:   http://cran.fhcrc.org/web/packages/colorspace/index.html
+BuildRequires: R = 2.8.1
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Carries out mapping between assorted color spaces including RGB, HSV,
+HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB and polar CIELAB.
+Qualitative, sequential, and diverging color palettes based on HCL
+colors are provided.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename} --no-build-vignettes
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-colorspace.git/commitdiff/a54af15fa1f4f1a3c978d183791828061fd56868

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-colorspace] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  a54af15... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-vcd] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  03b3e75... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-colorspace: colorspace_1.2-4.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/colorspace_1.2-4.tar.gz
1f9a05587ffae27fc3e4da7503d016fc  colorspace_1.2-4.tar.gz
Size: 242791 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-vcd] - new

2013-11-29 Thread baggins
commit 03b3e754827af4a64f35540d290e2c8b86ebf27b
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:25:37 2013 +0100

- new

 R-cran-vcd.spec | 44 
 1 file changed, 44 insertions(+)
---
diff --git a/R-cran-vcd.spec b/R-cran-vcd.spec
new file mode 100644
index 000..93159f2
--- /dev/null
+++ b/R-cran-vcd.spec
@@ -0,0 +1,44 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  vcd
+Summary:   Visualizing Categorical Data
+Name:  R-cran-%{modulename}
+Version:   1.3r1
+Release:   1
+License:   GPL v2
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: 3529759583680bd45f8b4ddf3252dc39
+URL:   http://cran.fhcrc.org/web/packages/vcd/index.html
+BuildRequires: R = 2.8.1
+BuildRequires: R-cran-colorspace
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+Requires:  R-cran-colorspace
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Visualization techniques, data sets, summary and inference procedures
+aimed particularly at categorical data. Special emphasis is given to
+highly extensible grid graphics. The package was inspired by the book
+Visualizing Categorical Data by Michael Friendly.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename} --no-build-vignettes
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-vcd.git/commitdiff/03b3e754827af4a64f35540d290e2c8b86ebf27b

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-vcd: vcd_1.3-1.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/vcd_1.3-1.tar.gz
3529759583680bd45f8b4ddf3252dc39  vcd_1.3-1.tar.gz
Size: 839779 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-munsell] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  ded53ed... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-munsell] - new

2013-11-29 Thread baggins
commit ded53edc01d00a397c5c02a8dbd01f775907fabd
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:27:00 2013 +0100

- new

 R-cran-munsell.spec | 41 +
 1 file changed, 41 insertions(+)
---
diff --git a/R-cran-munsell.spec b/R-cran-munsell.spec
new file mode 100644
index 000..9081d6c
--- /dev/null
+++ b/R-cran-munsell.spec
@@ -0,0 +1,41 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  munsell
+Summary:   Munsell colour system
+Name:  R-cran-%{modulename}
+Version:   0.4.2
+Release:   1
+License:   MIT
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: 45561402fe3ffb8e534a1487bb60d938
+URL:   http://cran.fhcrc.org/web/packages/munsell/index.html
+BuildRequires: R = 2.8.1
+BuildRequires: R-cran-colorspace
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+Requires:  R-cran-colorspace
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Functions for exploring and using the Munsell colour system.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-munsell.git/commitdiff/ded53edc01d00a397c5c02a8dbd01f775907fabd

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-munsell: munsell_0.4.2.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/munsell_0.4.2.tar.gz
45561402fe3ffb8e534a1487bb60d938  munsell_0.4.2.tar.gz
Size: 91026 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-plyr] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  8a96333... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-plyr] - new

2013-11-29 Thread baggins
commit 8a963334a7072dfff8230297b79841f742f33530
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:29:30 2013 +0100

- new

 R-cran-plyr.spec | 45 +
 1 file changed, 45 insertions(+)
---
diff --git a/R-cran-plyr.spec b/R-cran-plyr.spec
new file mode 100644
index 000..6fa222d
--- /dev/null
+++ b/R-cran-plyr.spec
@@ -0,0 +1,45 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  plyr
+Summary:   Tools for splitting, applying and combining data
+Name:  R-cran-%{modulename}
+Version:   1.8
+Release:   1
+License:   GPL v2
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: e1c1d2f0c47fd16b2cef6ec9c2e5883c
+URL:   http://cran.fhcrc.org/web/packages/plyr/index.html
+BuildRequires: R = 2.8.1
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+plyr is a set of tools that solves a common set of problems: you need
+to break a big problem down into manageable pieces, operate on each
+pieces and then put all the pieces back together. For example,
+you might want to fit a model to each spatial location or time point
+in your study, summarise data by panels or collapse high-dimensional
+arrays to simpler summary statistics. The development of plyr has been
+generously supported by BD (Becton Dickinson).
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename} --no-build-vignettes
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-plyr.git/commitdiff/8a963334a7072dfff8230297b79841f742f33530

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-scales] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  0fbb8b9... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-plyr: plyr_1.8.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/plyr_1.8.tar.gz
e1c1d2f0c47fd16b2cef6ec9c2e5883c  plyr_1.8.tar.gz
Size: 384462 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-scales] - new

2013-11-29 Thread baggins
commit 0fbb8b97c8691a0c659c89d1087c1d5c21301c9c
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:30:49 2013 +0100

- new

 R-cran-scales.spec | 52 
 1 file changed, 52 insertions(+)
---
diff --git a/R-cran-scales.spec b/R-cran-scales.spec
new file mode 100644
index 000..e6602df
--- /dev/null
+++ b/R-cran-scales.spec
@@ -0,0 +1,52 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  scales
+Summary:   Scale functions for graphics
+Name:  R-cran-%{modulename}
+Version:   0.2.3
+Release:   1
+License:   GPL v2
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: 426e5a785d4bc5b9ba8aa10d2bc043a3
+URL:   http://cran.fhcrc.org/web/packages/scales/index.html
+BuildRequires: R = 2.8.1
+BuildRequires: R-cran-RColorBrewer
+BuildRequires: R-cran-stringr
+BuildRequires: R-cran-dichromat
+BuildRequires: R-cran-munsell = 0.2
+BuildRequires: R-cran-plyr = 1.2
+BuildRequires: R-cran-labeling
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+Requires:  R-cran-RColorBrewer
+Requires:  R-cran-#, stringr
+Requires:  R-cran-dichromat
+Requires:  R-cran-munsell = 0.2
+Requires:  R-cran-plyr = 1.2
+Requires:  R-cran-labeling
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Scales map data to aesthetics, and provide methods for automatically
+determining breaks and labels for axes and legends.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-scales.git/commitdiff/0fbb8b97c8691a0c659c89d1087c1d5c21301c9c

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-scales: scales_0.2.3.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/scales_0.2.3.tar.gz
426e5a785d4bc5b9ba8aa10d2bc043a3  scales_0.2.3.tar.gz
Size: 39429 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-scales] - typo

2013-11-29 Thread baggins
commit fd40e2784b97e8d038f67a4fd3cf18ecd501de67
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:33:10 2013 +0100

- typo

 R-cran-scales.spec | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)
---
diff --git a/R-cran-scales.spec b/R-cran-scales.spec
index e6602df..11949ab 100644
--- a/R-cran-scales.spec
+++ b/R-cran-scales.spec
@@ -21,7 +21,7 @@ Requires(post,postun):perl-base
 Requires(post,postun): textutils
 Requires:  R
 Requires:  R-cran-RColorBrewer
-Requires:  R-cran-#, stringr
+Requires:  R-cran-stringr
 Requires:  R-cran-dichromat
 Requires:  R-cran-munsell = 0.2
 Requires:  R-cran-plyr = 1.2


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-scales.git/commitdiff/fd40e2784b97e8d038f67a4fd3cf18ecd501de67

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-biovizBase] - new

2013-11-29 Thread baggins
commit 89efce48a542645eb11bcfc09e4905a9abd9d1e4
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:35:59 2013 +0100

- new

 R-biovizBase.spec | 69 +++
 1 file changed, 69 insertions(+)
---
diff --git a/R-biovizBase.spec b/R-biovizBase.spec
new file mode 100644
index 000..4f9c17e
--- /dev/null
+++ b/R-biovizBase.spec
@@ -0,0 +1,69 @@
+%definepacknamebiovizBase
+
+Summary:   Basic graphic utilities for visualization of genomic data
+Name:  R-%{packname}
+Version:   1.10.4
+Release:   1
+License:   Artistic 2.0
+Group: X11/Applications
+Source0:   
http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5: c9f2652887977e5283bcbb6b9e30b14a
+URL:   
http://www.bioconductor.org/packages/release/bioc/html/biovizBase.html
+BuildRequires: R
+BuildRequires: R-cran-scales
+BuildRequires: R-cran-Hmisc
+BuildRequires: R-cran-RColorBrewer
+BuildRequires: R-cran-dichromat
+BuildRequires: R-GenomicRanges
+BuildRequires: R-Biostrings
+BuildRequires: R-Rsamtools
+BuildRequires: R-GenomicFeatures
+BuildRequires: texlive-latex
+Requires:  R
+Requires:  R-scales
+Requires:  R-Hmisc
+Requires:  R-RColorBrewer
+Requires:  R-dichromat
+Requires:  R-GenomicRanges
+Requires:  R-Biostrings
+Requires:  R-Rsamtools
+Requires:  R-GenomicFeatures
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+The biovizBase package is designed to provide a set of utilities,
+color schemes and conventions for genomic data. It serves as the base
+for various high-level packages for biological data visualization.
+This saves development effort and encourages consistency.
+
+%prep
+%setup -c -q -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%{_bindir}/R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}/
+%doc %{_libdir}/R/library/%{packname}/doc/
+%doc %{_libdir}/R/library/%{packname}/html/
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/NEWS
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/data/
+%{_libdir}/R/library/%{packname}/examples/
+%{_libdir}/R/library/%{packname}/extdata/
+%dir %{_libdir}/R/library/%{packname}/libs
+%attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/biovizBase.so


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-biovizBase.git/commitdiff/89efce48a542645eb11bcfc09e4905a9abd9d1e4

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-biovizBase] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  89efce4... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-biovizBase: biovizBase_1.10.4.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: 
http://www.bioconductor.org/packages/release/bioc/src/contrib/biovizBase_1.10.4.tar.gz
c9f2652887977e5283bcbb6b9e30b14a  biovizBase_1.10.4.tar.gz
Size: 1035620 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-biovizBase] - fix deps

2013-11-29 Thread baggins
commit 24fb6ce88e6d9351c6029f114082aa75282af3bb
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:39:04 2013 +0100

- fix deps

 R-biovizBase.spec | 8 
 1 file changed, 4 insertions(+), 4 deletions(-)
---
diff --git a/R-biovizBase.spec b/R-biovizBase.spec
index 4f9c17e..1937692 100644
--- a/R-biovizBase.spec
+++ b/R-biovizBase.spec
@@ -20,10 +20,10 @@ BuildRequires:  R-Rsamtools
 BuildRequires: R-GenomicFeatures
 BuildRequires: texlive-latex
 Requires:  R
-Requires:  R-scales
-Requires:  R-Hmisc
-Requires:  R-RColorBrewer
-Requires:  R-dichromat
+Requires:  R-cran-scales
+Requires:  R-cran-Hmisc
+Requires:  R-cran-RColorBrewer
+Requires:  R-cran-dichromat
 Requires:  R-GenomicRanges
 Requires:  R-Biostrings
 Requires:  R-Rsamtools


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-biovizBase.git/commitdiff/24fb6ce88e6d9351c6029f114082aa75282af3bb

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-fastcluster] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  232883c... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-fastcluster] - new

2013-11-29 Thread baggins
commit 232883c78f63c9a13b37a3a93fc6c023957c2bd9
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:45:46 2013 +0100

- new

 R-cran-fastcluster.spec | 48 
 1 file changed, 48 insertions(+)
---
diff --git a/R-cran-fastcluster.spec b/R-cran-fastcluster.spec
new file mode 100644
index 000..220a9cd
--- /dev/null
+++ b/R-cran-fastcluster.spec
@@ -0,0 +1,48 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  fastcluster
+Summary:   Fast hierarchical clustering routines for R and Python
+Name:  R-cran-%{modulename}
+Version:   1.1.11
+Release:   1
+License:   GPL v2
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: 9c2654e574237c4c72b5d3fa60bf
+URL:   http://cran.fhcrc.org/web/packages/fastcluster/index.html
+BuildRequires: R = 2.8.1
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+This is a two-in-one package which provides interfaces to both R and
+Python. It implements fast hierarchical, agglomerative clustering
+routines. Part of the functionality is designed as drop-in replacement
+for existing routines: “linkage” in the SciPy package
+“scipy.cluster.hierarchy”, “hclust” in R's “stats” package, and the
+“flashClust” package. It provides the same functionality with the
+benefit of a much faster implementation. Moreover, there are
+memory-saving routines for clustering of vector data, which go beyond
+what the existing packages provide. For information on how to install
+the Python files, see the file INSTALL in the source distribution.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-fastcluster.git/commitdiff/232883c78f63c9a13b37a3a93fc6c023957c2bd9

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-fastcluster: fastcluster_1.1.11.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/fastcluster_1.1.11.tar.gz
9c2654e574237c4c72b5d3fa60bf  fastcluster_1.1.11.tar.gz
Size: 169803 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-reshape2] - new

2013-11-29 Thread baggins
commit 1fdea0c5addbaecd350b463b0d169cb02487ab05
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:47:12 2013 +0100

- new

 R-cran-reshape2.spec | 40 
 1 file changed, 40 insertions(+)
---
diff --git a/R-cran-reshape2.spec b/R-cran-reshape2.spec
new file mode 100644
index 000..62251d7
--- /dev/null
+++ b/R-cran-reshape2.spec
@@ -0,0 +1,40 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  reshape2
+Summary:   Flexibly reshape data: a reboot of the reshape package
+Name:  R-cran-%{modulename}
+Version:   1.2.2
+Release:   1
+License:   GPL v2
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: 4b13c53b2a184c0498b351608ff8a085
+URL:   http://cran.fhcrc.org/web/packages/reshape2/index.html
+BuildRequires: R = 2.8.1
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Reshape lets you flexibly restructure and aggregate data using just
+two functions: melt and cast.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-reshape2.git/commitdiff/1fdea0c5addbaecd350b463b0d169cb02487ab05

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-reshape2] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  1fdea0c... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-reshape2: reshape2_1.2.2.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/reshape2_1.2.2.tar.gz
4b13c53b2a184c0498b351608ff8a085  reshape2_1.2.2.tar.gz
Size: 27220 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-proto] - new

2013-11-29 Thread baggins
commit a9da911943091b2d04842fc60e6b93cdc575bdcf
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:57:02 2013 +0100

- new

 R-cran-proto.spec | 40 
 1 file changed, 40 insertions(+)
---
diff --git a/R-cran-proto.spec b/R-cran-proto.spec
new file mode 100644
index 000..7775235
--- /dev/null
+++ b/R-cran-proto.spec
@@ -0,0 +1,40 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  proto
+Summary:   Prototype object-based programming
+Name:  R-cran-%{modulename}
+Version:   0.3r10
+Release:   1
+License:   GPL v2
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: d5523943a5be6ca2f0ab557c900f8212
+URL:   http://cran.fhcrc.org/web/packages/proto/index.html
+BuildRequires: R = 2.8.1
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+An object oriented system using object-based, also called
+prototype-based, rather than class-based object oriented ideas.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-proto.git/commitdiff/a9da911943091b2d04842fc60e6b93cdc575bdcf

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-proto] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  a9da911... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-proto: proto_0.3-10.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/proto_0.3-10.tar.gz
d5523943a5be6ca2f0ab557c900f8212  proto_0.3-10.tar.gz
Size: 530758 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-gtable] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  80c569e... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-gtable] - new

2013-11-29 Thread baggins
commit 80c569e61f7bba3c59a3a5d2f2c45014001bb6e1
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:58:11 2013 +0100

- new

 R-cran-gtable.spec | 39 +++
 1 file changed, 39 insertions(+)
---
diff --git a/R-cran-gtable.spec b/R-cran-gtable.spec
new file mode 100644
index 000..7b9923d
--- /dev/null
+++ b/R-cran-gtable.spec
@@ -0,0 +1,39 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  gtable
+Summary:   Arrange grobs in tables
+Name:  R-cran-%{modulename}
+Version:   0.1.2
+Release:   1
+License:   GPL v2
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: be491aa5220f0059a0e1cb04679b6563
+URL:   http://cran.fhcrc.org/web/packages/gtable/index.html
+BuildRequires: R = 2.8.1
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Tools to make it easier to work with tables of grobs.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-gtable.git/commitdiff/80c569e61f7bba3c59a3a5d2f2c45014001bb6e1

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-gtable: gtable_0.1.2.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/gtable_0.1.2.tar.gz
be491aa5220f0059a0e1cb04679b6563  gtable_0.1.2.tar.gz
Size: 19667 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-digest] - new

2013-11-29 Thread baggins
commit 1e6664556cc940b7c37adc5a9ec391d91bd1ba2c
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 12:59:55 2013 +0100

- new

 R-cran-digest.spec | 43 +++
 1 file changed, 43 insertions(+)
---
diff --git a/R-cran-digest.spec b/R-cran-digest.spec
new file mode 100644
index 000..9994ad1
--- /dev/null
+++ b/R-cran-digest.spec
@@ -0,0 +1,43 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  digest
+Summary:   Create cryptographic hash digests of R objects
+Name:  R-cran-%{modulename}
+Version:   0.6.3
+Release:   1
+License:   GPL v2
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: d7913e8091a31885ee2ab798badd7958
+URL:   http://cran.fhcrc.org/web/packages/digest/index.html
+BuildRequires: R = 2.8.1
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+The digest package provides a function 'digest()' for the creation of
+hash digests of arbitrary R objects (using the md5, sha-1, sha-256 and
+crc32 algorithms) permitting easy comparison of R language objects,
+as well as a function 'hmac()' to create hash-based message
+authentication code.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-digest.git/commitdiff/1e6664556cc940b7c37adc5a9ec391d91bd1ba2c

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-digest] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  1e66645... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-ggplot2] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  157d6b5... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-ggplot2] - new

2013-11-29 Thread baggins
commit 157d6b5d872a21b6f88416fef6d60ae242a988a2
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 13:01:01 2013 +0100

- new

 R-cran-ggplot2.spec | 57 +
 1 file changed, 57 insertions(+)
---
diff --git a/R-cran-ggplot2.spec b/R-cran-ggplot2.spec
new file mode 100644
index 000..ec19f1a
--- /dev/null
+++ b/R-cran-ggplot2.spec
@@ -0,0 +1,57 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  ggplot2
+Summary:   Fast hierarchical clustering routines for R and Python
+Name:  R-cran-%{modulename}
+Version:   0.9.3.1
+Release:   1
+License:   GPL v2
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: f01d950c6385750e737ac7eac6260c87
+URL:   http://cran.fhcrc.org/web/packages/ggplot2/index.html
+BuildRequires: R = 2.8.1
+BuildRequires: R-cran-digest
+BuildRequires: R-cran-gtable
+BuildRequires: R-cran-reshape2
+BuildRequires: R-cran-proto
+BuildRequires: R-cran-plyr
+BuildRequires: R-cran-scales
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+Requires:  R-cran-digest
+Requires:  R-cran-gtable
+Requires:  R-cran-reshape2
+Requires:  R-cran-proto
+Requires:  R-cran-plyr
+Requires:  R-cran-scales
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+An implementation of the grammar of graphics in R. It combines the
+advantages of both base and lattice graphics: conditioning and shared
+axes are handled automatically, and you can still build up a plot step
+by step from multiple data sources. It also implements a sophisticated
+multidimensional conditioning system and a consistent interface to map
+data to aesthetic attributes. See the ggplot2 website for more
+information, documentation and examples.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-ggplot2.git/commitdiff/157d6b5d872a21b6f88416fef6d60ae242a988a2

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-digest: digest_0.6.3.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/digest_0.6.3.tar.gz
d7913e8091a31885ee2ab798badd7958  digest_0.6.3.tar.gz
Size: 80083 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-ggplot2: ggplot2_0.9.3.1.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/ggplot2_0.9.3.1.tar.gz
f01d950c6385750e737ac7eac6260c87  ggplot2_0.9.3.1.tar.gz
Size: 2330942 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-latticeExtra] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  cfddce5... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cran-latticeExtra] - new

2013-11-29 Thread baggins
commit cfddce51461829fae2b330797d4f5152873c8acc
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 13:10:22 2013 +0100

- new

 R-cran-latticeExtra.spec | 39 +++
 1 file changed, 39 insertions(+)
---
diff --git a/R-cran-latticeExtra.spec b/R-cran-latticeExtra.spec
new file mode 100644
index 000..a377ac4
--- /dev/null
+++ b/R-cran-latticeExtra.spec
@@ -0,0 +1,39 @@
+%definefversion%(echo %{version} |tr r -)
+%definemodulename  latticeExtra
+Summary:   Extra Graphical Utilities Based on Lattice
+Name:  R-cran-%{modulename}
+Version:   0.6r26
+Release:   1
+License:   GPL v2+
+Group: Applications/Math
+Source0:   
ftp://stat.ethz.ch/R-CRAN/src/contrib/%{modulename}_%{fversion}.tar.gz
+# Source0-md5: f17954ceb5333c1a9bd7fe3f175aac6c
+URL:   http://latticeextra.r-forge.r-project.org/
+BuildRequires: R = 2.8.1
+Requires(post,postun): R = 2.8.1
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Requires:  R
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Extra graphical utilities based on lattice.
+
+%prep
+%setup -q -c
+
+%build
+R CMD build %{modulename}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library/
+R CMD INSTALL %{modulename} --library=$RPM_BUILD_ROOT%{_libdir}/R/library/
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{modulename}/DESCRIPTION
+%{_libdir}/R/library/%{modulename}


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cran-latticeExtra.git/commitdiff/cfddce51461829fae2b330797d4f5152873c8acc

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cran-latticeExtra: latticeExtra_0.6-26.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: ftp://stat.ethz.ch/R-CRAN/src/contrib/latticeExtra_0.6-26.tar.gz
f17954ceb5333c1a9bd7fe3f175aac6c  latticeExtra_0.6-26.tar.gz
Size: 1295154 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-Gviz] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  14195db... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-Gviz] - new

2013-11-29 Thread baggins
commit 14195db77bc62a65410abd60f66538203d3bd137
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 13:12:28 2013 +0100

- new

 R-Gviz.spec | 58 ++
 1 file changed, 58 insertions(+)
---
diff --git a/R-Gviz.spec b/R-Gviz.spec
new file mode 100644
index 000..fb7c15d
--- /dev/null
+++ b/R-Gviz.spec
@@ -0,0 +1,58 @@
+%definepacknameGviz
+
+Summary:   Plotting data and annotation information along genomic 
coordinates
+Name:  R-%{packname}
+Version:   1.6.0
+Release:   1
+License:   Artistic 2.0
+Group: X11/Applications
+Source0:   
http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5: 0bcff07c6791c32fce881bc3991ff0f7
+URL:   http://www.bioconductor.org/packages/release/bioc/html/Gviz.html
+BuildRequires: R
+BuildRequires: R-biovizBase
+BuildRequires: R-cran-latticeExtra
+BuildRequires: texlive-latex
+Requires:  R
+Requires:  R-biovizBase
+Requires:  R-cran-latticeExtra
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Genomic data analyses requires integrated visualization of known
+genomic information and new experimental data. Gviz uses the biomaRt
+and the rtracklayer packages to perform live annotation queries to
+Ensembl and UCSC and translates this to e.g. gene/transcript
+structures in viewports of the grid graphics package. This results in
+genomic information plotted together with your data.
+
+%prep
+%setup -c -q -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%{_bindir}/R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}/
+%doc %{_libdir}/R/library/%{packname}/doc/
+%doc %{_libdir}/R/library/%{packname}/html/
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/NEWS
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/data/
+%{_libdir}/R/library/%{packname}/extdata/
+%{_libdir}/R/library/%{packname}/lib/
+%{_libdir}/R/library/%{packname}/scripts/


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-Gviz.git/commitdiff/14195db77bc62a65410abd60f66538203d3bd137

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-Gviz: Gviz_1.6.0.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: 
http://www.bioconductor.org/packages/release/bioc/src/contrib/Gviz_1.6.0.tar.gz
0bcff07c6791c32fce881bc3991ff0f7  Gviz_1.6.0.tar.gz
Size: 1965136 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: R-cummeRbund: cummeRbund_2.4.0.tar.gz

2013-11-29 Thread baggins

Files fetched: 1

STORED: 
http://bioconductor.org/packages/release/bioc/src/contrib/cummeRbund_2.4.0.tar.gz
f6236638b8305fd6ac7c58bd5f9bb89d  cummeRbund_2.4.0.tar.gz
Size: 2273576 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cummeRbund] - new

2013-11-29 Thread baggins
commit b8659c1c03f0ca98aaa355c0097d6215bf4abaaf
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 13:16:43 2013 +0100

- new

 R-cummeRbund.spec | 66 +++
 1 file changed, 66 insertions(+)
---
diff --git a/R-cummeRbund.spec b/R-cummeRbund.spec
new file mode 100644
index 000..91f8589
--- /dev/null
+++ b/R-cummeRbund.spec
@@ -0,0 +1,66 @@
+%definepacknamecummeRbund
+
+Summary:   Analysis, exploration, manipulation, and visualization of 
Cufflinks high-throughput sequencing data
+Name:  R-%{packname}
+Version:   2.4.0
+Release:   1
+License:   LGPL v2+
+Group: Applications/Engineering
+Source0:   
http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5: f6236638b8305fd6ac7c58bd5f9bb89d
+URL:   
http://bioconductor.org/packages/release/bioc/html/cummeRbund.html
+BuildRequires: R
+BuildRequires: R-BiocGenerics = 0.3.2
+BuildRequires: R-Gviz
+BuildRequires: R-cran-fastcluster
+BuildRequires: R-cran-ggplot2
+BuildRequires: R-cran-plyr
+BuildRequires: R-cran-reshape2
+BuildRequires: R-cran-RSQLite
+BuildRequires: R-rtracklayer
+BuildRequires: texlive-latex
+Requires:  R
+Requires:  R-BiocGenerics = 0.3.2
+Requires:  R-Gviz
+Requires:  R-cran-fastcluster
+Requires:  R-cran-ggplot2
+Requires:  R-cran-plyr
+Requires:  R-cran-reshape2
+Requires:  R-cran-RSQLite
+Requires:  R-rtracklayer
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Allows for persistent storage, access, exploration, and manipulation
+of Cufflinks high-throughput sequencing data. In addition, provides
+numerous plotting functions for commonly used visualizations.
+
+%prep
+%setup -q -c -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}
+%doc %{_libdir}/R/library/%{packname}/doc
+%doc %{_libdir}/R/library/%{packname}/html
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/NEWS
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/Meta
+%{_libdir}/R/library/%{packname}/R
+%{_libdir}/R/library/%{packname}/help
+%{_libdir}/R/library/%{packname}/data
+%{_libdir}/R/library/%{packname}/extdata
+%{_libdir}/R/library/%{packname}/reports


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/R-cummeRbund.git/commitdiff/b8659c1c03f0ca98aaa355c0097d6215bf4abaaf

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/R-cummeRbund] Created branch master

2013-11-29 Thread baggins
The branch 'master' was created.

Summary of new commits:

  b8659c1... - new
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/chef] R iproute2 for /sbin/ip and ohai to detect ips properly

2013-11-29 Thread glen
commit bb312a69fca36e00cc7db15543b4bd3b9ba21076
Author: Elan Ruusamäe g...@delfi.ee
Date:   Thu Nov 28 17:59:22 2013 +0200

R iproute2 for /sbin/ip and ohai to detect ips properly

 chef.spec | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)
---
diff --git a/chef.spec b/chef.spec
index 107591e..1d21a9b 100644
--- a/chef.spec
+++ b/chef.spec
@@ -5,7 +5,7 @@
 Summary:   A systems integration framework, built to bring the benefits of 
configuration management to your entire infrastructure
 Name:  chef
 Version:   11.6.2
-Release:   5
+Release:   6
 License:   Apache v2.0
 Group: Development/Languages
 Source0:   http://rubygems.org/downloads/%{name}-%{version}.gem
@@ -41,6 +41,7 @@ BuildRequires:ruby-rspec-mocks = 2.12.0
 #BuildRequires:ruby-sdoc
 %endif
 Requires:  diffutils
+Requires:  iproute2
 Requires:  lsb-release
 Requires:  poldek = 0.30
 Requires:  ruby = 1:1.9.3.429-4


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/chef.git/commitdiff/bb312a69fca36e00cc7db15543b4bd3b9ba21076

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/lxc-docker] Adapterise

2013-11-29 Thread aredridel
commit 38bf56600ceb15956a5f3f0b1bf3fba9baad6e44
Author: Aria Stewart aredri...@nbtsc.org
Date:   Fri Nov 29 08:15:36 2013 -0700

Adapterise

 lxc-docker.spec | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)
---
diff --git a/lxc-docker.spec b/lxc-docker.spec
index 0c9f48f..63a2d20 100644
--- a/lxc-docker.spec
+++ b/lxc-docker.spec
@@ -145,7 +145,7 @@ rm -rf $RPM_BUILD_ROOT
 %files
 %defattr(644,root,root,755)
 %doc README.md CHANGELOG.md CONTRIBUTING.md FIXME LICENSE AUTHORS NOTICE 
MAINTAINERS
-%attr(644,root,root) %{systemdunitdir}/lxc-docker.service
+%{systemdunitdir}/lxc-docker.service
 %attr(754,root,root) /etc/rc.d/init.d/lxc-docker
 %attr(755,root,root) %{_bindir}/lxc-docker
 %attr(755,root,root) %{_bindir}/docker


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/lxc-docker.git/commitdiff/38bf56600ceb15956a5f3f0b1bf3fba9baad6e44

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/libgit2] - added no-libgit2-test patch (disable patch requiring local libgit2 repository, not present in rele

2013-11-29 Thread qboosh
commit 6bc0cd1c57bab21201e748467140c6f8b8f67194
Author: Jakub Bogusz qbo...@pld-linux.org
Date:   Fri Nov 29 17:11:45 2013 +0100

- added no-libgit2-test patch (disable patch requiring local libgit2 
repository, not present in release tarballs)

 libgit2-no-libgit2-test.patch | 11 +++
 libgit2.spec  |  2 ++
 2 files changed, 13 insertions(+)
---
diff --git a/libgit2.spec b/libgit2.spec
index f8d003a..c907a8a 100644
--- a/libgit2.spec
+++ b/libgit2.spec
@@ -13,6 +13,7 @@ Group:Libraries
 Source0:   
https://github.com/libgit2/libgit2/archive/v%{version}.tar.gz?/%{name}-%{version}.tar.gz
 # Source0-md5: e35f613a37e11354f34249f2faa68237
 Patch0:%{name}-test-online.patch
+Patch1:%{name}-no-libgit2-test.patch
 URL:   http://libgit2.github.com/
 BuildRequires: cmake = 2.6
 BuildRequires: http-parser-devel
@@ -51,6 +52,7 @@ Pliki nagłówkowe biblioteki libgit2.
 %prep
 %setup -q
 %patch0 -p1
+%patch1 -p1
 
 %build
 install -d build
diff --git a/libgit2-no-libgit2-test.patch b/libgit2-no-libgit2-test.patch
new file mode 100644
index 000..acb5691
--- /dev/null
+++ b/libgit2-no-libgit2-test.patch
@@ -0,0 +1,11 @@
+--- libgit2-0.20.0/tests/blame/simple.c.orig   2013-11-20 12:53:33.0 
+0100
 libgit2-0.20.0/tests/blame/simple.c2013-11-29 16:59:19.887747596 
+0100
+@@ -130,7 +130,7 @@
+  * bf477ed4 include/git2.h 45 (Michael Schubert2012-02-15 00:33:38 +0100 
59
+  * d12299fe src/git.h  49 (Vicent Martí2010-12-03 22:22:10 +0200 
60
+  */
+-void test_blame_simple__trivial_libgit2(void)
++/*disable*/ void test_blame_simple__trivial_libgit2(void)
+ {
+   git_blame_options opts = GIT_BLAME_OPTIONS_INIT;
+   git_object *obj;


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/libgit2.git/commitdiff/6bc0cd1c57bab21201e748467140c6f8b8f67194

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/dovecot] - up to 2.2.9

2013-11-29 Thread arekm
commit 13466ff07a0a6a2a90769d2f30ad02f65afd89ae
Author: Arkadiusz Miśkiewicz ar...@maven.pl
Date:   Fri Nov 29 18:23:15 2013 +0100

- up to 2.2.9

 dovecot.spec | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)
---
diff --git a/dovecot.spec b/dovecot.spec
index 91d22e5..ab467d9 100644
--- a/dovecot.spec
+++ b/dovecot.spec
@@ -10,13 +10,13 @@
 Summary:   IMAP and POP3 server written with security primarily in mind
 Summary(pl.UTF-8): Serwer IMAP i POP3 pisany głównie z myślą o 
bezpieczeństwie
 Name:  dovecot
-Version:   2.2.6
+Version:   2.2.9
 Release:   1
 Epoch: 1
 License:   MIT (libraries), LGPL v2.1 (the rest)
 Group: Networking/Daemons
 Source0:   http://dovecot.org/releases/2.2/%{name}-%{version}.tar.gz
-# Source0-md5: db65988ef2e6889dd8b49c132b21fc8f
+# Source0-md5: 6e620a4020b7cc9855cbb304a63efc87
 Source1:   %{name}.pamd
 Source2:   %{name}.init
 Source3:   %{name}.sysconfig


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/dovecot.git/commitdiff/13466ff07a0a6a2a90769d2f30ad02f65afd89ae

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: dovecot: dovecot-2.2.9.tar.gz

2013-11-29 Thread arekm

Files fetched: 1

STORED: http://dovecot.org/releases/2.2/dovecot-2.2.9.tar.gz
6e620a4020b7cc9855cbb304a63efc87  dovecot-2.2.9.tar.gz
Size: 4540858 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/mozilla-firefox] - up to 25.0.1

2013-11-29 Thread qboosh
commit 329a2b8758f06f101e9ad5d9bc8034810f441868
Author: Jakub Bogusz qbo...@pld-linux.org
Date:   Fri Nov 29 18:41:04 2013 +0100

- up to 25.0.1

 mozilla-firefox-941837.patch | 20 
 mozilla-firefox.spec |  6 --
 2 files changed, 24 insertions(+), 2 deletions(-)
---
diff --git a/mozilla-firefox.spec b/mozilla-firefox.spec
index b5f2661..3d30abf 100644
--- a/mozilla-firefox.spec
+++ b/mozilla-firefox.spec
@@ -21,17 +21,18 @@
 Summary:   Firefox Community Edition web browser
 Summary(pl.UTF-8): Firefox Community Edition - przeglądarka WWW
 Name:  mozilla-firefox
-Version:   25.0
+Version:   25.0.1
 Release:   1
 License:   MPL 1.1 or GPL v2+ or LGPL v2.1+
 Group: X11/Applications/Networking
 Source0:   
http://releases.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/source/firefox-%{version}.source.tar.bz2
-# Source0-md5: 90ac047e83079a9046192c732e195329
+# Source0-md5: b5b57d3ea937a339e0ed7ebea604b430
 Source3:   %{name}.desktop
 Source4:   %{name}.sh
 Source5:   vendor.js
 Source6:   vendor-ac.js
 Patch0:%{name}-branding.patch
+Patch1:%{name}-941837.patch
 Patch7:%{name}-prefs.patch
 Patch9:%{name}-no-subshell.patch
 Patch11:   %{name}-middle_click_paste.patch
@@ -139,6 +140,7 @@ mv -f mozilla-release mozilla
 cd mozilla
 
 %patch0 -p1
+%patch1 -p1
 %patch7 -p1
 %patch9 -p2
 %patch11 -p2
diff --git a/mozilla-firefox-941837.patch b/mozilla-firefox-941837.patch
new file mode 100644
index 000..8e85cf6
--- /dev/null
+++ b/mozilla-firefox-941837.patch
@@ -0,0 +1,20 @@
+--- a/js/src/gc/Memory.cpp.orig2013-11-13 01:13:53.0 +0100
 a/js/src/gc/Memory.cpp 2013-11-28 05:03:31.160133711 +0100
+@@ -63,7 +63,7 @@
+ p = VirtualAlloc(NULL, size * 2, MEM_RESERVE, PAGE_READWRITE);
+ if (!p)
+ return NULL;
+-void *chunkStart = (void *)(uintptr_t(p) + (alignment - (uintptr_t(p) 
% alignment)));
++void *chunkStart = (void *)AlignBytes(uintptr_t(p), alignment);
+ UnmapPages(rt, p, size * 2);
+ p = VirtualAlloc(chunkStart, size, MEM_COMMIT | MEM_RESERVE, 
PAGE_READWRITE);
+ 
+@@ -335,7 +335,7 @@
+ uintptr_t offset = uintptr_t(region) % alignment;
+ JS_ASSERT(offset  reqSize - size);
+ 
+-void *front = (void *)(uintptr_t(region) + (alignment - offset));
++void *front = (void *)AlignBytes(uintptr_t(region), alignment);
+ void *end = (void *)(uintptr_t(front) + size);
+ if (front != region)
+ JS_ALWAYS_TRUE(0 == munmap(region, alignment - offset));


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/mozilla-firefox.git/commitdiff/329a2b8758f06f101e9ad5d9bc8034810f441868

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: readline: readline-6.2.tar.gz

2013-11-29 Thread baggins

Files fetched: 0

ALREADY GOT: http://ftp.gnu.org/gnu/readline/readline-6.2.tar.gz
67948acb2ca081f23359d0256e9a271c  readline-6.2.tar.gz


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: python-sphinxcontrib-issuetracker: sphinxcontrib-issuetracker-0.11.tar.gz python-objects.inv sphinx-objects.inv

2013-11-29 Thread baggins

Files fetched: 0

ALREADY GOT: 
http://pypi.python.org/packages/source/s/sphinxcontrib-issuetracker/sphinxcontrib-issuetracker-0.11.tar.gz
69c2f0e5770c5d7bad73f60f8d764e28  sphinxcontrib-issuetracker-0.11.tar.gz
ALREADY GOT: http://docs.python.org/objects.inv#/python-objects.inv
9128e774ec21dcd62dc5bca61cdd91ee  python-objects.inv
ALREADY GOT: http://sphinx.pocoo.org/objects.inv#/sphinx-objects.inv
4db0b6eb4e1f4635ad02669e5b1ba15e  sphinx-objects.inv


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: truecrypt: truecrypt-7.1a.tar.gz wxWidgets-2.8.12.tar.bz2 pkcs11.h pkcs11f.h pkcs11t.h

2013-11-29 Thread baggins

Files fetched: 0

ALREADY GOT: 
http://www.truecrypt.org/download/transient/ac30ffc056648e240aaa/TrueCrypt%207.1a%20Source.tar.gz#/truecrypt-7.1a.tar.gz
102d9652681db11c813610882332ae48  truecrypt-7.1a.tar.gz
ALREADY GOT: http://downloads.sourceforge.net/wxwindows/wxWidgets-2.8.12.tar.bz2
4103e37e277abeb8aee607b990c215c4  wxWidgets-2.8.12.tar.bz2
ALREADY GOT: ftp://ftp.rsasecurity.com/pub/pkcs/pkcs-11/v2-20/pkcs11.h
713ac88786b436a5df02bface7dfce45  pkcs11.h
ALREADY GOT: ftp://ftp.rsasecurity.com/pub/pkcs/pkcs-11/v2-20/pkcs11f.h
652434a5793eb14aae7b5baa07f6cfc7  pkcs11f.h
ALREADY GOT: ftp://ftp.rsasecurity.com/pub/pkcs/pkcs-11/v2-20/pkcs11t.h
aeebc839b98e672982abf566e6a25525  pkcs11t.h


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: sipp: ERRORS: sipp-3.3.tar.xz

2013-11-29 Thread baggins
wget -nv --no-check-certificate --user-agent=PLD/distfiles -O 
./tmp/a28ab081-5d16-4dbd-b757-9777f3bf84d2/f0c4f472fa86de8a528cb91616323617/sipp-3.3.tar.xz
 http://dl.sourceforge.net/sipp/sipp-3.3.tar.xz:
exited with code 4 (0x00)

FATAL: http://dl.sourceforge.net/sipp/sipp-3.3.tar.xz 
(f0c4f472fa86de8a528cb91616323617) was not fetched correctly (wget -nv 
--no-check-certificate --user-agent=PLD/distfiles -O 
./tmp/a28ab081-5d16-4dbd-b757-9777f3bf84d2/f0c4f472fa86de8a528cb91616323617/sipp-3.3.tar.xz
 http://dl.sourceforge.net/sipp/sipp-3.3.tar.xz: ): file fetched but has 0 
length

Files fetched: 0



-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: dokuwiki-plugin-include: include-20120902.tgz

2013-11-29 Thread baggins

Files fetched: 0

ALREADY GOT: 
http://github.com/dokufreaks/plugin-include/tarball/master#/include-20120902.tgz
3ff6adff1413be3be85041e291044a9d  include-20120902.tgz


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: grive:

2013-11-29 Thread baggins

Files fetched: 0



-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/mozilla-firefox-languages] - up to 25.0.1

2013-11-29 Thread qboosh
commit 520f80d675ebe32134f7a0d8a9a2bbd2b6731925
Author: Jakub Bogusz qbo...@pld-linux.org
Date:   Fri Nov 29 19:50:55 2013 +0100

- up to 25.0.1

 mozilla-firefox-languages.spec | 180 -
 1 file changed, 90 insertions(+), 90 deletions(-)
---
diff --git a/mozilla-firefox-languages.spec b/mozilla-firefox-languages.spec
index 3621471..a0d2f35 100644
--- a/mozilla-firefox-languages.spec
+++ b/mozilla-firefox-languages.spec
@@ -12,188 +12,188 @@ curl -s $U | sed -ne 
's,.*href=\([^]\+\)/.*,'$U'xpi/\1.xpi,p'
 Summary:   Language packs for Firefox
 Summary(pl.UTF-8): Pakiety językowe dla Firefoksa
 Name:  mozilla-firefox-languages
-Version:   25.0
+Version:   25.0.1
 Release:   1
 License:   MPL 1.1 or GPL v2+ or LGPL v2.1+
 Group: I18n
 Source0:   
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/ach.xpi
-# Source0-md5: a7ec287c35b7a599735a9b1cb20a3d80
+# Source0-md5: 23a3cfeadb501acbcac73d8965f7db97
 Source1:   
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/af.xpi
-# Source1-md5: fe7fc95d1df1dbf8af9109c0b3084b8b
+# Source1-md5: e7b3cf1c7931fdf4cdc237fb867a687f
 Source2:   
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/ak.xpi
-# Source2-md5: 2d60d076d18176368e5a166e92d81231
+# Source2-md5: 579bed5883571b999c00cb40ead6cf28
 Source3:   
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/ar.xpi
-# Source3-md5: 6ff428e3ddb78c5164c8cfa63f029640
+# Source3-md5: d051531a144e058a0d289ce32c27e515
 Source4:   
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/as.xpi
-# Source4-md5: 3be2b3a6a3f52e8daa405eb7ae73f408
+# Source4-md5: a8a646ea5ba7f1027ee4dc5b524c96a8
 Source5:   
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/ast.xpi
-# Source5-md5: 5d160b57fcbe93f826c899ab01a9a3ff
+# Source5-md5: 0032f9b809a1c5dc3e9be171d584209b
 Source6:   
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/be.xpi
-# Source6-md5: f8ea9e30c70a20f44df802ed7deaed4e
+# Source6-md5: ef3286f6d26054f4661d55a930a20d85
 Source7:   
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/bg.xpi
-# Source7-md5: c9afe91757db0410ac2622e9e307066d
+# Source7-md5: 75af48dd7140a7feb4bba28c84d8aadb
 Source8:   
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/bn-BD.xpi
-# Source8-md5: d07966c3e78b4c1218ad8ddf74cef6c4
+# Source8-md5: 25a4c574be8e4a9e3ee557b0e337
 Source9:   
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/bn-IN.xpi
-# Source9-md5: 9d5837a41e0b542ab067bd32b30bc1c9
+# Source9-md5: 84ad1f1569df66e3a654b8b32aa1633b
 Source10:  
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/br.xpi
-# Source10-md5:597f6e7df761ea7e62186b8bf35fb3fa
+# Source10-md5:5a5cbb43a1f4f3e5cd0d949bdebdb9c4
 Source11:  
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/bs.xpi
-# Source11-md5:9859310ecc3fc180dcdbcb4168258467
+# Source11-md5:066b8c64af7832019710af1dd528ac6e
 Source12:  
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/ca.xpi
-# Source12-md5:021c5b909e8887622dfc76ef8615f846
+# Source12-md5:eedd3df2aef27bf18fc6809ebf59d2f9
 Source13:  
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/cs.xpi
-# Source13-md5:80ce583201c24a03b2c31122d15ca6dd
+# Source13-md5:a4896902f6b00543f1fd316853240ae2
 Source14:  
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/csb.xpi
-# Source14-md5:efd7e29a6fa470249710667bfd6bb9b4
+# Source14-md5:fdcd74b431ab34ede28b1f1caeaf0a1a
 Source15:  
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/cy.xpi
-# Source15-md5:e7d8f053d6ae5c40d7e26dd0c89d3118
+# Source15-md5:ea55b13678e4de8e065f15a6bcf1efe7
 Source16:  
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/da.xpi
-# Source16-md5:984012fb41e96b0b60f0d571ab7f0241
+# Source16-md5:13f3458add38bda264eed222d6f33c9b
 Source17:  
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/de.xpi
-# Source17-md5:d60e8a98187dfaa280fc00be53ee31c2
+# Source17-md5:23c893eb92d2fa8992ef79e00884b656
 Source18:  
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/el.xpi
-# Source18-md5:a334ef9098155e44e925fe7804c15000
+# Source18-md5:22a8c5b0d53c0feb1e615eb0098b7895
 Source19:  
http://ftp.mozilla.org/pub/mozilla.org/firefox/releases/%{version}/linux-i686/xpi/en-GB.xpi
-# Source19-md5:

[packages/perl-Locale-US] - release 2 (by relup.sh)

2013-11-29 Thread baggins
commit 2cd3ecbd34a68f1f438fdfacdbca9bf57c188083
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 21:14:36 2013 +0100

- release 2 (by relup.sh)

 perl-Locale-US.spec | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)
---
diff --git a/perl-Locale-US.spec b/perl-Locale-US.spec
index 44c627e..5bd5220 100644
--- a/perl-Locale-US.spec
+++ b/perl-Locale-US.spec
@@ -9,7 +9,7 @@ Summary:Two letter codes for state identification in 
the United States and vice
 Summary(pl.UTF-8): Dwuliterowe kody do identyfikacji stanów w USA
 Name:  perl-Locale-US
 Version:   2.112150
-Release:   1
+Release:   2
 # same as perl
 License:   GPL v1+ or Artistic
 Group: Development/Languages/Perl


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/perl-Locale-US.git/commitdiff/2cd3ecbd34a68f1f438fdfacdbca9bf57c188083

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/polkit] - release 2 (by relup.sh)

2013-11-29 Thread baggins
commit 6894c8e14354cd4673b657d6029a45482d35bbd8
Author: Jan Rękorajski bagg...@pld-linux.org
Date:   Fri Nov 29 22:08:54 2013 +0100

- release 2 (by relup.sh)

 polkit.spec | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)
---
diff --git a/polkit.spec b/polkit.spec
index c69448d..b3529cc 100644
--- a/polkit.spec
+++ b/polkit.spec
@@ -7,7 +7,7 @@ Summary:A framework for defining policy for system-wide 
components
 Summary(pl.UTF-8): Szkielet do definiowania polityki dla komponentów 
systemowych
 Name:  polkit
 Version:   0.112
-Release:   1
+Release:   2
 License:   LGPL v2+
 Group: Libraries
 Source0:   
http://www.freedesktop.org/software/polkit/releases/%{name}-%{version}.tar.gz


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/polkit.git/commitdiff/6894c8e14354cd4673b657d6029a45482d35bbd8

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/rcs] - updated to 5.9.2

2013-11-29 Thread qboosh
commit 756767156677637b4efead51fe0afa19bcc76711
Author: Jakub Bogusz qbo...@pld-linux.org
Date:   Fri Nov 29 22:27:46 2013 +0100

- updated to 5.9.2

 rcs.spec | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)
---
diff --git a/rcs.spec b/rcs.spec
index ce70098..96e4671 100644
--- a/rcs.spec
+++ b/rcs.spec
@@ -6,12 +6,12 @@ Summary(pl.UTF-8):RCS - system kontroli wersji
 Summary(pt_BR.UTF-8):  RCS - sistema de controle de versões
 Summary(tr.UTF-8): Sürüm denetleme sistemi
 Name:  rcs
-Version:   5.9.1
+Version:   5.9.2
 Release:   1
 License:   GPL v3+
 Group: Development/Version Control
 Source0:   http://ftp.gnu.org/gnu/rcs/%{name}-%{version}.tar.xz
-# Source0-md5: 43af6f4cce2c42bb4572691bb97e4396
+# Source0-md5: 2af60f0baa0262888d229c2f0f5b8390
 Source1:   
http://www.mif.pg.gda.pl/homepages/ankry/man-PLD/%{name}-non-english-man-pages.tar.bz2
 # Source1-md5: ba094b833436afc14ac1679a78e50da5
 Patch0:%{name}-debian.patch


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/rcs.git/commitdiff/756767156677637b4efead51fe0afa19bcc76711

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: rcs: rcs-5.9.2.tar.xz rcs-non-english-man-pages.tar.bz2

2013-11-29 Thread qboosh

Files fetched: 1

STORED: http://ftp.gnu.org/gnu/rcs/rcs-5.9.2.tar.xz
2af60f0baa0262888d229c2f0f5b8390  rcs-5.9.2.tar.xz
Size: 795096 bytes
ALREADY GOT: 
http://www.mif.pg.gda.pl/homepages/ankry/man-PLD/rcs-non-english-man-pages.tar.bz2
ba094b833436afc14ac1679a78e50da5  rcs-non-english-man-pages.tar.bz2


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


[packages/libgoffice] - updated to 0.10.9

2013-11-29 Thread qboosh
commit fa6a6f8c7bf649ecdc9f0a813b6b4588c57b304f
Author: Jakub Bogusz qbo...@pld-linux.org
Date:   Fri Nov 29 22:53:06 2013 +0100

- updated to 0.10.9

 libgoffice.spec | 18 --
 1 file changed, 12 insertions(+), 6 deletions(-)
---
diff --git a/libgoffice.spec b/libgoffice.spec
index 60e7c03..9a54194 100644
--- a/libgoffice.spec
+++ b/libgoffice.spec
@@ -1,15 +1,19 @@
+#
+# Conditional build:
+%bcond_without static_libs # static library
+#
 %defineorgname goffice
 %defineapi_version 0.10
 #
 Summary:   Glib/Gtk+ set of document centric objects and utilities
 Summary(pl.UTF-8): Zestaw zorientowanych dokumentowo obiektów i narzędzi 
Glib/Gtk+
 Name:  libgoffice
-Version:   0.10.4
+Version:   0.10.9
 Release:   1
 License:   GPL v2+
 Group: Libraries
 Source0:   
http://ftp.gnome.org/pub/GNOME/sources/goffice/0.10/%{orgname}-%{version}.tar.xz
-# Source0-md5: 93f06f8ee70d2601b158762b0a543927
+# Source0-md5: 98e540dc4273eca088d31005fcf397d9
 URL:   http://www.gtk.org/
 BuildRequires: autoconf = 2.54
 BuildRequires: automake
@@ -88,10 +92,10 @@ Dokumentacja API biblioteki GOffice.
 %{__autoheader}
 %{__automake}
 %configure \
-   --enable-static \
-   --enable-introspection=yes \
-   --with-html-dir=%{_gtkdocdir} \
-   --disable-silent-rules
+   --enable-introspection \
+   --disable-silent-rules \
+   %{?with_static_libs:--enable-static} \
+   --with-html-dir=%{_gtkdocdir}
 %{__make}
 
 %install
@@ -134,9 +138,11 @@ rm -rf $RPM_BUILD_ROOT
 %{_pkgconfigdir}/libgoffice-%{api_version}.pc
 %{_datadir}/gir-1.0/GOffice-%{api_version}.gir
 
+%if %{with static_libs}
 %files static
 %defattr(644,root,root,755)
 %{_libdir}/libgoffice-%{api_version}.a
+%endif
 
 %files apidocs
 %defattr(644,root,root,755)


 gitweb:

http://git.pld-linux.org/gitweb.cgi/packages/libgoffice.git/commitdiff/fa6a6f8c7bf649ecdc9f0a813b6b4588c57b304f

___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit


DISTFILES: libgoffice: goffice-0.10.9.tar.xz

2013-11-29 Thread qboosh

Files fetched: 1

STORED: 
http://ftp.gnome.org/pub/GNOME/sources/goffice/0.10/goffice-0.10.9.tar.xz
98e540dc4273eca088d31005fcf397d9  goffice-0.10.9.tar.xz
Size: 2214120 bytes


-- 
Virtually Yours: distfiles.
___
pld-cvs-commit mailing list
pld-cvs-commit@lists.pld-linux.org
http://lists.pld-linux.org/mailman/listinfo/pld-cvs-commit