Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-04-20 Thread Kurt Wall (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Kurt Wall updated an issue 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
 PuppetDB /  PDB-2424 
 
 
 
  DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 

Change By:
 
 Kurt Wall 
 
 
 

QA Status:
 
 Reviewed 
 
 
 

QA Risk Assessment:
 
 Low 
 
 
 
 
 
 
 
 
 
 
 
 

 
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Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-03-18 Thread Ryan Senior (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Ryan Senior updated an issue 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
 PuppetDB /  PDB-2424 
 
 
 
  DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 

Change By:
 
 Ryan Senior 
 
 
 

Fix Version/s:
 
 PDB 3.2.x 
 
 
 

Fix Version/s:
 
 PDB 4.0.0 
 
 
 
 
 
 
 
 
 
 
 
 

 
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Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-02-25 Thread Daniele Sluijters (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Daniele Sluijters commented on  PDB-2424 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
  Re: DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 
 
Thanks for figuring this out Ryan Senior! Sorry I couldn't get you a better description of what we were seeing. 
 
 
 
 
 
 
 
 
 
 
 
 

 
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Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-02-24 Thread Ryan Senior (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Ryan Senior commented on  PDB-2424 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
  Re: DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 
 
I have figured out the issue and I have a fix for it. We're coercing the value in the column to something so that we can compare it with the value we're trying to delete. This means we'll decode every source and target hash for the certname before we compare it to the value we have in hand (the thing we're trying to delete). I have a PR up that switches it so we convert the source/target hash we're trying to delete to bytea, then run the query. This means we convert the value we have in hand, not each of the values in the column. 
This is not only WAY faster, it also hits the unique index that is already in place for the edges table. Daniele Sluijters with this patch you won't need your indexes anymore, they won't hurt anything, but you'll find they won't be used.  
 
 
 
 
 
 
 
 
 
 
 
 

 
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Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-02-24 Thread Ryan Senior (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Ryan Senior assigned an issue to Ryan Senior 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
 PuppetDB /  PDB-2424 
 
 
 
  DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 

Change By:
 
 Ryan Senior 
 
 
 

Assignee:
 
 Ryan Senior 
 
 
 
 
 
 
 
 
 
 
 
 

 
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Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-02-24 Thread Susan McNerney (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Susan McNerney updated an issue 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
 PuppetDB /  PDB-2424 
 
 
 
  DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 

Change By:
 
 Susan McNerney 
 
 
 

Sprint:
 
 PuppetDB 2016- 03-09, PuppetDB 2016- 02-24 
 
 
 
 
 
 
 
 
 
 
 
 

 
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Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-02-24 Thread Ryan Senior (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Ryan Senior commented on  PDB-2424 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
  Re: DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 
 
maybe it's the encode thing, we've switched to that recently, I'll investigate that side of it 
 
 
 
 
 
 
 
 
 
 
 
 

 
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Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-02-24 Thread Daniele Sluijters (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Daniele Sluijters commented on  PDB-2424 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
  Re: DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 
 
Ryan Senior From what we could see the DELETE would call with the encode(source) in there and since the index created by PuppetDB doesn't take the end value produced by encode into account, but only the original source the index you mention doesn't get used. 
 
 
 
 
 
 
 
 
 
 
 
 

 
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Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-02-22 Thread Ryan Senior (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Ryan Senior commented on  PDB-2424 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
  Re: DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 
 
Daniele Sluijters I looked at this and I don't see the issue. We have a unique index on (certname, source, target, type). Our current delete edges code, calls a delete using (certname, source, target). This still hits the unique index. There's only a few types of edges that we support, so it doesn't seem like that would ever be slow. One thing I do see is that we issue seperate deletes for each edge, which is really slow. Instead we should issue one delete statement that includes all the edges we need to delete. 
That doesn't seem to match up with what you're seeing. Do you have any more info on the issue? 
 
 
 
 
 
 
 
 
 
 
 
 

 
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Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-02-22 Thread Russell Mull (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Russell Mull commented on  PDB-2424 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
  Re: DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 
 
edges appears to be pretty seriously under-indexed at the moment; this fix does sound plausible.  
 
 
 
 
 
 
 
 
 
 
 
 

 
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Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-02-22 Thread Ryan Senior (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Ryan Senior updated an issue 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
 PuppetDB /  PDB-2424 
 
 
 
  DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 

Change By:
 
 Ryan Senior 
 
 
 

Scope Change Category:
 
 Adopted 
 
 
 

Scope Change Reason:
 
 Had extra time 
 
 
 
 
 
 
 
 
 
 
 
 

 
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Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-02-22 Thread Ryan Senior (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Ryan Senior updated an issue 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
 PuppetDB /  PDB-2424 
 
 
 
  DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 

Change By:
 
 Ryan Senior 
 
 
 

Story Points:
 
 1 
 
 
 
 
 
 
 
 
 
 
 
 

 
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Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-02-22 Thread Ryan Senior (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Ryan Senior updated an issue 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
 PuppetDB /  PDB-2424 
 
 
 
  DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 

Change By:
 
 Ryan Senior 
 
 
 

Sprint:
 
 PuppetDB 2016- 03 02 - 09 24 
 
 
 
 
 
 
 
 
 
 
 
 

 
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Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-02-17 Thread Ryan Senior (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Ryan Senior updated an issue 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
 PuppetDB /  PDB-2424 
 
 
 
  DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 

Change By:
 
 Ryan Senior 
 
 
 

Sprint:
 
 PuppetDB 2016-03-09 
 
 
 
 
 
 
 
 
 
 
 
 

 
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Jira (PDB-2424) DELETE FROM edges is extremely slow

2016-02-11 Thread Daniele Sluijters (JIRA)
Title: Message Title
 
 
 
 
 
 
 
 
 
 
  
 
 Daniele Sluijters created an issue 
 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
 PuppetDB /  PDB-2424 
 
 
 
  DELETE FROM edges is extremely slow  
 
 
 
 
 
 
 
 
 

Issue Type:
 
  Bug 
 
 
 

Assignee:
 

 Unassigned 
 
 
 

Created:
 

 2016/02/11 8:00 AM 
 
 
 

Priority:
 
  Normal 
 
 
 

Reporter:
 
 Daniele Sluijters 
 
 
 
 
 
 
 
 
 
 
We were seeing a lot of DELETE FROM edges queries taking 4-6s or more. We added some indices on edges which seems to have solved it: 
 
 
 
 
 
 
"edges_certname_idx" btree (certname) 
 
 
 
 
"edges_source_hex_idx" btree (encode(source, 'hex'::text)) 
 
 
 
 
"edges_target_hex_idx" btree (encode(target, 'hex'::text)) 
 
 
 
 
"edges_type_idx" btree (type)