[PyMOL] strand representation + free label

2003-08-14 Thread Tina Li 
Hello,

I'm wondering if it's possible to simulate RasMol-styled strand
representation (a number of smooth curves that run parallel to one another
along the peptide plane of each residue). I would like something like that to
repersent gaps in a structural alignment (i.e. a segment that doesn't exist
in an approximated structure). Currently I'm using the dash lines as for
bonds. However, is there a way to change the distance label into something I
can specify, like 7 AA to indicate the gap length?


Thanks,

Tina

RE: [PyMOL] strand representation + free label

2003-08-14 Thread Warren L. DeLano 
Tina,

That would be very difficult to do at present...I'll take this
as a suggestion for a future version.

Cheers,
Warren


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mailto:war...@delanoscientific.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154 
Fax   (650)-593-4020

 -Original Message-
 From: pymol-users-ad...@lists.sourceforge.net [mailto:pymol-users-
 ad...@lists.sourceforge.net] On Behalf Of Tina Li
 Sent: Thursday, August 14, 2003 8:19 AM
 To: pymol-users@lists.sourceforge.net
 Subject: [PyMOL] strand representation + free label
 
 Hello,
 
 I'm wondering if it's possible to simulate RasMol-styled strand
 representation (a number of smooth curves that run parallel to one
another
 along the peptide plane of each residue). I would like something like
that
 to
 repersent gaps in a structural alignment (i.e. a segment that doesn't
 exist
 in an approximated structure). Currently I'm using the dash lines as
for
 bonds. However, is there a way to change the distance label into
something
 I
 can specify, like 7 AA to indicate the gap length?
 
 
 Thanks,
 
 Tina
 
 
 
 
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[PyMOL] cartoon display

2003-08-14 Thread Oded Kleifeld 
 
Hi all,
I notice that if I change original the PDB file (by text editing or even
using pymol mutation wizard ) I can not get the original cartoon display
anymore and the display look like heavy ribbons instead.
Any ideas? 
Thanks
OdedIMSTP.gif