[PyMOL] RE: Stereo on G4 Laptop?

[Warren L. DeLano]

Doug,

Yes, I just confirmed that PyMOL on a Mac 17" G4 PowerBook can
drive stereo using the StereoGraphics SVGA display adapter with an
external monitor.  I would expect any G4 PowerBook to be able to do
this.  The command line way to launch in stereo mode is given below.

/Applications/PyMOL.app/Contents/MacOS/PyMOL -BGS

Alternative, you could simply click on the "PyMOL Stereo" icon in the
Demos folder.

Cheers,
Warren


--
mailto:war...@delanoscientific.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154 
Fax   (650)-593-4020

> -Original Message-
> Sent: Monday, December 15, 2003 11:16 AM
> To: war...@delanoscientific.com
> Subject: Stereo on G4 Laptop?
> 
> Dear Warren,
> 
> I am a crystallographer from the university of oregon.  I am
> considering purchasing a G4 laptop and was wondering if you had used
> the crystal eyes from Stereographics on a vga monitor plugged into one
> of these laptops.
> 
> Thanks,
> Doug

RE: [PyMOL] expand to molecule (by connectivity)

[Warren L. DeLano]

Michal,

This capability is not in PyMOL yet as a selection operator, but
if you issue "edit" on a single atom, then the resulting "pkchain"
selection will contain that atom and all covalently attached atoms.  

edit 14/ca
color red, pkchain
unpick

Cheers,
Warren

--
mailto:war...@delanoscientific.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154 
Fax   (650)-593-4020

> -Original Message-
> From: pymol-users-ad...@lists.sourceforge.net [mailto:pymol-users-
> ad...@lists.sourceforge.net] On Behalf Of Michal Bozon
> Sent: Saturday, December 13, 2003 7:25 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] expand to molecule (by connectivity)
> 
> Dear pymol experts,
> 
> I wonder if there's a simple way how to select a molecule (or expand
the
> selection to molecule) by connectivity.
> I mean the case there if there are more molecules in the object and I
want
> to select one of them and create a new object from it in order to
change
> it's properties.
> 'Byres' and similar seleciton operators do not work.
> 
> thanks,
> 
> Michal Bozon
> 
> 
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