[PyMOL] Labels not showing up during batch mode PNG creation

2007-02-26 Thread Prakash Velayutham
Hi,

I have PyMOL-0.99rc6 in SuSE Pro 9.3. I have a script that generates
labels in the screen. At the end I generate a PNG output. All of this
works when I use PyMOL interactively. The output PNG file is fine.

But when I run PyMOL in batch mode (-c flag), the PNG file created does
not show the labels. Has anyone seen this before? Is this the way it is
supposed to work?

Thanks,
Prakash



[PyMOL] scene export

2007-02-26 Thread aaron bryden

Does anyone know of the best way to get a scene export of all polygons
currently being used? I am not afraid to modify the pymol source and
have done so for other custom projects. The vrml export option is very
much appreciated but exporting stick models has the unfortunate
consequence that the bonds are exported as cylinders as opposed to
polygons, which results in the vrml interpreter rendering the sticks
with lots of polygons.

Has anyone looked into solutions for this problem other than getting
your vrml importer to use more coarse primitives?

Aaron