Re: [PyMOL] (no subject)
Martin, No, sorry, you will need an external tool to do this. Cheers, Warren -- DeLano Scientific LLC Subscriber Support Services mailto:del...@delsci.info "Not yet a PyMOL Subscriber, but want to support the project? Email sa...@delsci.com to quote your lab, school, or employer. Thank you for sponsoring this open-source endeavor!" -WLD > -Original Message- > From: pymol-users-boun...@lists.sourceforge.net > [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf > Of Martin Sztacho > Sent: Monday, April 16, 2007 3:51 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] (no subject) > > Hello, > I would like to ask about building phosphate group at Tyr > residue. Is there any posibility to do it at PyMOL programe? > Thank you for answer > Martin Sztacho > > -- > --- > This SF.net email is sponsored by DB2 Express Download DB2 > Express C - the FREE version of DB2 express and take control > of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > ___ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users
Re: [PyMOL] vrml export normals
Just FYI -- use the latest open-source code or recent beta builds for current VRML export, since older versions export faulty VRML. Cheers, Warren > -Original Message- > From: pymol-users-boun...@lists.sourceforge.net > [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf > Of aaron bryden > Sent: Wednesday, April 18, 2007 12:15 PM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] vrml export normals > > Has anyone had good luck with the VRML export. It seems that > there is a problem with the normals that are exported in some > cases. Can anyone recommend a VRML viewer that works well > with the exported files. > > aaron > > -- > --- > This SF.net email is sponsored by DB2 Express Download DB2 > Express C - the FREE version of DB2 express and take control > of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > ___ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users
Re: [PyMOL] "report" or "clone" settings?
Tom, This isn't currently possible without "hacking" the session files, and doing so is not something I can encourage as a "supportable" activity. Use a script! Cheers, Warren _ From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Thomas Stout Sent: Wednesday, April 18, 2007 10:24 AM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] "report" or "clone" settings? Does anyone know if there is a way of reporting all of the display settings for an object, or - conversely - "cloning" the display settings from one object onto another? Specifically, I am thinking about the situation where I have one elaborately displayed object that is protein A in complex with ligand 1. Now I am in a position where I want to apply those same settings to many more objects that are also protein A, although each in complex with a different ligand (2 through N). All objects are named identically in terms of chains, residue numbers, et cetera. Thanks! -Tom PS - Yes, I know that the "right" way to have done this was via a script that defined all settings, a la molscript, but that's not the situation I am in now! This email (including any attachments) may contain material that is confidential and privileged and is for the sole use of the intended recipient. Any review, reliance or distribution by others or forwarding without express permission is strictly prohibited. If you are not the intended recipient, please contact the sender and delete all copies. Exelixis, Inc. reserves the right, to the extent and under circumstances permitted by applicable law, to retain, monitor and intercept e-mail messages to and from its systems.
[PyMOL] vrml export normals
Has anyone had good luck with the VRML export. It seems that there is a problem with the normals that are exported in some cases. Can anyone recommend a VRML viewer that works well with the exported files. aaron
[PyMOL] "report" or "clone" settings?
Does anyone know if there is a way of reporting all of the display settings for an object, or - conversely - "cloning" the display settings from one object onto another? Specifically, I am thinking about the situation where I have one elaborately displayed object that is protein A in complex with ligand 1. Now I am in a position where I want to apply those same settings to many more objects that are also protein A, although each in complex with a different ligand (2 through N). All objects are named identically in terms of chains, residue numbers, et cetera. Thanks! -Tom PS - Yes, I know that the "right" way to have done this was via a script that defined all settings, a la molscript, but that's not the situation I am in now! This email (including any attachments) may contain material that is confidential and privileged and is for the sole use of the intended recipient. Any review, reliance or distribution by others or forwarding without express permission is strictly prohibited. If you are not the intended recipient, please contact the sender and delete all copies. Exelixis, Inc. reserves the right, to the extent and under circumstances permitted by applicable law, to retain, monitor and intercept e-mail messages to and from its systems.
