Re: [PyMOL] Label entire movie
Hi Thomas, thank you very much! This is exactly what I was looking for. Is it also possible to change font and box color? Cheers, Anke -Ursprüngliche Nachricht- Von: Thomas Holder [mailto:ad...@thomas-holder.de] Im Auftrag von Thomas Holder Gesendet: Freitag, 21. September 2012 20:49 An: Rasbach, Anke Cc: pymol-users@lists.sourceforge.net Betreff: Re: [PyMOL] Label entire movie Hi Anke, you can use the message wizard to place a text box to the upper left corner of the viewport. PyMOL wizard message, Some free text Cheers, Thomas Rasbach, Anke wrote, On 09/21/12 13:35: Hi everyone, we have generated a quite complex pymol movie and would like to include a label that is always located in the lower right corner throughout the entire movie. We have already labeled a pseudoatom positioned at the lower right corner but due to camera motions the text is flying around as well. Is there the possibility of adding a global text box not specified to a x,y,z position? Or an easy way to move the pseudoatom accordingly? Thanks Anke -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Label entire movie
Hi Anke, Rasbach, Anke wrote, On 09/24/12 13:08: [...] Is it also possible to change font and box color? no, that's not possible. The colors are hard-coded. Cheers, Thomas -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Label entire movie
Hi Thomas, On Mon, Sep 24, 2012 at 11:11 AM, Thomas Holder spel...@users.sourceforge.net wrote: [...] Is it also possible to change font and box color? no, that's not possible. The colors are hard-coded. That's not quite right. You can change the text color with some trickery. The syntax to change the text color is: \RGB where R, G, B are red, green, and blue intensities from 0-9, respectively. So, to make a red colored message just type, wizard message, \900This is a red message. You can change color more than once, wizard message, \900This \550is a \255multicolor \059message. Cheers, -- Jason -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] Normalize ccp4 maps- problem
Dear Pymol Users, I am a basic level user of the Pymol. I am trying to make a figure with my ligand showing electron density. In principle, the guide on the pymol wiki works and i get to show the map. But I wanted to lower the sampling of the mesh in the electron density and tried to unset normalizing ccp4 maps before loading the map and the pdb. After this, the isomesh map, mymap.map, 2.0, site, carve=1.6 updates the map but i dont see any electron density mesh on the screen. I request your help regarding this problem. The pymol version is 1.504. Many thanks in anticipation, Vasan-- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
