[PyMOL] defer_builds_mode

2013-05-23 Thread Daniel Mann
Hello,
I just wanted to leave a short note on a possible bug I've observed.
When I stop PyMOL from caching the geometry of my trajectory in RAM by
set_defer_builds_mode, 3
and load a rather short trajectory (ca. 100 frames) of a protein that is 
shown in Cartoon-representation PyMOL starts eating my RAM gradually.
As the trajectory loops several times more and more is stored to RAM, 
even worse the "reinit" command doesn't get rid of the cache, whatever 
is cached to RAM there...
This doesn't seem to happen in lines-representation, but also for sticks.
(PyMOL 1.5.0.4, Ubuntu 12.04 64-bit)

Regards,
Daniel

-- 
Daniel Mann, M.Sc
Department of Biophysics
Ruhr-University Bochum


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Re: [PyMOL] defer_builds_mode

2013-05-23 Thread Thomas Holder
Hi Daniel,

this memory leak is fixed in PyMOL 1.6 (latest open-source).

Cheers,
  Thomas

Daniel Mann wrote, On 05/23/13 17:56:
> Hello,
> I just wanted to leave a short note on a possible bug I've observed.
> When I stop PyMOL from caching the geometry of my trajectory in RAM by
> set_defer_builds_mode, 3
> and load a rather short trajectory (ca. 100 frames) of a protein that is 
> shown in Cartoon-representation PyMOL starts eating my RAM gradually.
> As the trajectory loops several times more and more is stored to RAM, 
> even worse the "reinit" command doesn't get rid of the cache, whatever 
> is cached to RAM there...
> This doesn't seem to happen in lines-representation, but also for sticks.
> (PyMOL 1.5.0.4, Ubuntu 12.04 64-bit)
> 
> Regards,
> Daniel

-- 
Thomas Holder
PyMOL Developer
Schrödinger Contractor

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