[PyMOL] Aligning multiple residue sets in two or more proteins
Dear all I need to align lets say resi 80-120 and 160-220 from one protein to resi 80-120 and 160-220 in second protein. How can i do this. I tried following: align PDB1 and resi 80-120, PDB2 and resi 80-120 this is for one set but how to do for two sets 80-120 as well as 160-220 simultaneously. Thank you Monica -- Open source business process management suite built on Java and Eclipse Turn processes into business applications with Bonita BPM Community Edition Quickly connect people, data, and systems into organized workflows Winner of BOSSIE, CODIE, OW2 and Gartner awards http://p.sf.net/sfu/Bonitasoft___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Aligning multiple residue sets in two or more proteins
Monica, Try: align PDB1//A/80-120+160-220/, PDB2//A/80-120+160-220/ or if you want to align using the alpha carbons, align PDB1//A/80-120+160-220/CA, PDB2//A/80-120+160-220/CA Cheers, -Rajintha On Wed, Jul 2, 2014 at 7:22 AM, Monica Mittal monica.mitta...@gmail.com wrote: Dear all I need to align lets say resi 80-120 and 160-220 from one protein to resi 80-120 and 160-220 in second protein. How can i do this. I tried following: align PDB1 and resi 80-120, PDB2 and resi 80-120 this is for one set but how to do for two sets 80-120 as well as 160-220 simultaneously. Thank you Monica -- Open source business process management suite built on Java and Eclipse Turn processes into business applications with Bonita BPM Community Edition Quickly connect people, data, and systems into organized workflows Winner of BOSSIE, CODIE, OW2 and Gartner awards http://p.sf.net/sfu/Bonitasoft ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Open source business process management suite built on Java and Eclipse Turn processes into business applications with Bonita BPM Community Edition Quickly connect people, data, and systems into organized workflows Winner of BOSSIE, CODIE, OW2 and Gartner awards http://p.sf.net/sfu/Bonitasoft___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] (no subject)
Hi Aliya, yes, likely there is a clash. But that's hard to tell without seeing your data. Cheers, Thomas On 01 Jul 2014, at 11:34, Aliya Holland holland_al...@wheatoncollege.edu wrote: Hello, I just created an animation of a conformational change of a specific domain on a molecule. During the animation the domain rotates just as it should, however other parts of the molecule moves with the conformation change. I was wondering if that was part of the PyMOL programming or if there was a clash between the end domain and the rotating section. Why would there be movement in the entire molecule when only one section of it is morphing. Thank you A -- Thomas Holder PyMOL Developer Schrödinger, Inc. -- Open source business process management suite built on Java and Eclipse Turn processes into business applications with Bonita BPM Community Edition Quickly connect people, data, and systems into organized workflows Winner of BOSSIE, CODIE, OW2 and Gartner awards http://p.sf.net/sfu/Bonitasoft ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
