Re: [PyMOL] Scripts don't work any longer after upgrade to v1.8.4

[Tsjerk Wassenaar]

Hi Thomas,

Can you give more information? What is in the script? Is something written
in the terminal?
FWIW, I have not encountered problems, and certainly not with selections.
My guess is that the script breaks before getting to the selection.

Cheers,

Tsjerk

On Thu, Nov 24, 2016 at 2:13 PM,  wrote:

> Hello all,
>
>
>
> after installation of Pymol v.1.8.4 on our Linux system, scripts that used
> to work fine with v.1.8.0.7 do not work anymore. Even a simple selection
> does not work.
>
> Is this a known problem? If so, is there a way to fix it?
>
> Any help is greatly appreciated.
>
>
>
> Best,
>
> Thomas
>
> 
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Tsjerk A. Wassenaar, Ph.D.
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[PyMOL] Scripts don't work any longer after upgrade to v1.8.4

[Reubold.Thomas]

Hello all,

after installation of Pymol v.1.8.4 on our Linux system, scripts that used to 
work fine with v.1.8.0.7 do not work anymore. Even a simple selection does not 
work.
Is this a known problem? If so, is there a way to fix it?
Any help is greatly appreciated.

Best,
Thomas
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Re: [PyMOL] selection coloring in ribbon

[Thomas Holder]

Hi Yuxing,

We have released Incentive PyMOL 1.8.4.1, which fixes the ribbon coloring issue.

Cheers,
  Thomas

On 21 Nov 2016, at 15:57, Thomas Holder  wrote:

> Hi Yuxing,
> 
> Thanks for reporting this. Yes it's a bug, luckily with a simple fix. We will 
> provide a bugfix release soon.
> 
> Cheers,
>  Thomas
> 
> On 21 Nov 2016, at 15:12, Yuxing Liao  wrote:
> 
>> Hello All,
>> 
>> I just updated Pymol from 1.8.0 to the latest 1.8.4. But I noticed when the 
>> structure is rendered in ribbon and you try to color part of it, the 
>> behavior changed at the boundaries. Instead of beginning and ending at the 
>> middle of the bonds like before, now the colors start and end at joints 
>> (actually colors one residue prior to the N-terminal of the selection). Is 
>> this a bug?
>> 
>> Thanks.
>> 
>> Yuxing
>> 
>> UT Southwestern
>> 
>> Medical Center
>> 
>> The future of medicine, today.

-- 
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.


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