[PyMOL] show nonbonded atoms with stick representation

[Gianluca Tomasello]

Hi, is it possible to render nonbonded atoms as small spheres using only
stick representation?
--
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot___
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net

Re: [PyMOL] show nonbonded atoms with stick representation

[Thomas Holder]

Hi Gianluca,

https://pymolwiki.org/index.php/nb_spheres

Cheers,
  Thomas

> On Jul 10, 2017, at 1:31 PM, Gianluca Tomasello  wrote:
> 
> Hi, is it possible to render nonbonded atoms as small spheres using only 
> stick representation?


--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.


--
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot
___
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net

[PyMOL] How to identify the pocket of a protein?

[Mohammad Goodarzi]

Hello,

I am wondering whether it is possible to find the pocket of a protein in
Pymol?
lets say I have a protein and a ligand inside the pocket. I want to
estimate the x, y and z

Best Regards,
Mohammad
--
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot___
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net