[PyMOL] Fw: How to compile pymol with --glut?
Using yum of centos or apt of Ubuntu cannot install the latest version. -- From:Robi Gus Sent At:2020 Feb. 14 (Fri.) 22:00 To:孙业平 Subject:Re: [PyMOL] How to compile pymol with --glut? much easier to use apt to install open source pymol binaries Sent: Friday, February 14, 2020 at 7:47 AM From: "sunyeping via PyMOL-users" To: "Thomas Holder" Cc: pymol-users Subject: Re: [PyMOL] How to compile pymol with --glut? Hi Thomas, Thank you and I know this has been asked before, but following the suggestion posted by you does not solve the problem. After run the two commands: rm -rf build python2 setup.py --glut install --prefix=~/pymol-install-py2 The same error still comes out. -- From:Thomas Holder Sent At:2020 Feb. 11 (Tue.) 17:34 To:孙业平 Cc:pymol-users Subject:Re: [PyMOL] How to compile pymol with --glut? Hi Yeping, This has been asked before (by you :-)), see here: https://sourceforge.net/p/pymol/mailman/message/36766620/ Cheers, Thomas > On Feb 8, 2020, at 2:12 PM, 孙业平 via PyMOL-users > wrote: > > Dear pymol users, > > I compiled pymol following the guide at > https://pymolwiki.org/index.php/Linux_Install in my CentOS 8 system. > When I tried to launch pymol by the "./pymol" command, I got the following > error: > > Qt not available, using GLUT/Tk interface > Traceback (most recent call last): > File > "/home/sunyp/software/Pymol/pymol-install/lib64/python/pymol/__init__.py", > line 65, in > pymol.launch(args) > File > "/home/sunyp/software/Pymol/pymol-install/lib64/python/pymol/__init__.py", > line 441, in launch > _cmd.runpymol(_cmd._get_global_C_object(), block_input_hook) > NotImplementedError: compile with --glut > > I then removed the "bin" and the "lib64" directories in the > "pymol-open-source-build" directory and recompiled pymol with the following > command: >python3 setup --glut install > --prefix=~/software/Pymol/pymol-open-source-build > > However, the newly generated pymol binary file does not work either. Launch > pymol give the same "Qt not available, using GLUT/Tk interface" error. > > Could you help me with this?Thank you in advance. > > Best regards. > > > ___ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
[PyMOL] Accessing vertex normals from surface representation within PyMOL session
Hi all - Is it possible to access surface triangle mesh position and normal values on a per-selection basis within a PyMOL session? I know it's possible to get these by writing out and parsing .obj files, but to do this for an entire protein surface in a per-atom/residue fashion would be inefficient. I imagine there must be a function to access this similar to "dump" for isosurfaces, but haven't been able to find it. Thanks a lot! Cheers, Jared ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
[PyMOL] cmd.add_state_loop() function
Hi, I'm trying to only add a given fraction of my structure ensemble to the movie frames. I see that there is a "first" and "last" option in the cmd.add_state_loop() function. However, the "last" option doesn't seem to be used by the body of the cmd.add_state_loop() function (at least the code in github). I guess this can be fixed easily? Thank you! Zheng ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
Re: [PyMOL] How to compile pymol with --glut?
Hi Thomas, Thank you and I know this has been asked before, but following the suggestion posted by you does not solve the problem. After run the two commands: rm -rf build python2 setup.py --glut install --prefix=~/pymol-install-py2 The same error still comes out. -- From:Thomas Holder Sent At:2020 Feb. 11 (Tue.) 17:34 To:孙业平 Cc:pymol-users Subject:Re: [PyMOL] How to compile pymol with --glut? Hi Yeping, This has been asked before (by you :-)), see here: https://sourceforge.net/p/pymol/mailman/message/36766620/ Cheers, Thomas > On Feb 8, 2020, at 2:12 PM, 孙业平 via PyMOL-users > wrote: > > Dear pymol users, > > I compiled pymol following the guide at > https://pymolwiki.org/index.php/Linux_Install in my CentOS 8 system. > When I tried to launch pymol by the "./pymol" command, I got the following > error: > > Qt not available, using GLUT/Tk interface > Traceback (most recent call last): > File > "/home/sunyp/software/Pymol/pymol-install/lib64/python/pymol/__init__.py", > line 65, in > pymol.launch(args) > File > "/home/sunyp/software/Pymol/pymol-install/lib64/python/pymol/__init__.py", > line 441, in launch > _cmd.runpymol(_cmd._get_global_C_object(), block_input_hook) > NotImplementedError: compile with --glut > > I then removed the "bin" and the "lib64" directories in the > "pymol-open-source-build" directory and recompiled pymol with the following > command: >python3 setup --glut install > --prefix=~/software/Pymol/pymol-open-source-build > > However, the newly generated pymol binary file does not work either. Launch > pymol give the same "Qt not available, using GLUT/Tk interface" error. > > Could you help me with this?Thank you in advance. > > Best regards. > > > ___ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
