[PyMOL] How to label residue name on top of sphere representation
Dear all, I wish to label residue name on top of sphere representation, but I find it is difficult. I tried the following command select sele, c. A & resi 47 & name CB show sphere, c. A & resi 47 lable sele, "Y47" I and the "Y47" label is hidden inside the sphere and cannot be seen. Even if I set the sphere to be 80 % transparency, the label cannot be seen yet. So what the the correct way to make such a labelling? Best regards, Yeping Sun___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
[PyMOL] Displaying internal cavities as a surface or a mesh
Hi, Apologies if this is a rudimentary question. I'd like to display an internal binding pocket around a compound as a surface (or mesh). I don't need to detect the presence of a cavity but simply show its approximate boundaries. 1. Is there a way to display the cavity as a surface about specific residues or objects? 2. Is there a way to display the cavity as a mesh instead of a surface? 3. Can the transparency of a mesh be set to a user defined value? Thanks in advance for your help, Irwin ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
