[PyMOL] Disable cartoon representation on load
Hi. How can I force pymol to show things in lines, not in cartoons, by default? Thanks. Petro. -- __ Petro Khoroshyy ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
[PyMOL] Surface and cartoon transparency together?
HI., I have tried to use surface and cartoon transparency together but then I can see only the surface. Cartoon disappears completely. Any trick to get it working? Thanks, Petro ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
[PyMOL] Generate electrostatics by Python command
Hi. How can I generate electrostatics using Python API? Thanks. Petro. ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
[PyMOL] save format for molecule files
Hi, I'm trying to save some molecule files (protein+ligand complex) from pymol to a format that is readable by maestro. I've tried saving in .mae or .pdb format, but bond orders in ligands are lost (all bonds are single). I've played with the "PDB options" in the save command and managed to get double bonds right, but the aromatic ones are ignored. Does anyone know how to write files that can be read properly by maestro? Alternatively, is there a way to convert aromatic bonds into alternating single/double bonds, as I think this would be easier to output based on my tests? thanks, Xavier -- Xavier Fradera ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
