[PyMOL] How to color aligned structures by equivalent SSE?

[Eric Schreiter]

I'm looking for a quick way to color two superimposed structures such that SSEs 
for which there is an equivalent in both structures are colored and the 
non-matching SSEs and loops are grey.  Also, the colored SSEs would be rainbow 
(e.g. the first matching SSE colored blue, second colored green, etc.).  Any 
ideas how to do this?
Thanks,
ERIC
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[PyMOL] graphics with GeForce4 card in windows vs. linux

[Eric Schreiter]

Hi All,
I have a machine running WindowsXP and RedHat 9 with an Albatron GeForce 
4 Ti4800se graphics card.  I notice that when I run pymol in windows it 
is much faster and smoother than when I run in linux.  When I open PyMol 
in windows, it says "Adapting to GeForce hardware..." but does not say 
this when I open it in linux.  Any thoughts on how I can get pymol to 
run more smoothly in linux?  Thanks for your help.

Cheers,
Eric