Re: [PyMOL] Molecular simulation

[Vedat Durmaz]

oh, that's easy, even i can tell you:

on the right panel you have a list of all your loaded molecules. now,
either you click on the "A" (action) field of the molecule you want to
add to another and and select "copy to object" and select the target
structure (which must be visible/activated) from the small popup list,
or, if you want to add a fragment of your source molecule to another,
then you need to select that part and apply the same clicking sequence
to the SELECTION (A>copy...>...).

you can always select fragments of a molecule and apply "copy to
object">"new" in order to have the single objects which you can then
copy into each other using the same mechanism as above.

hope that was clear enough. good luck!

vedat


Am 22.04.21 um 10:39 schrieb Sofiane SAADOUNE:
> Dear users,
>
> I'm user on PyMoL, and i have question.
>
> I have 2 proteins and i would like to merge them on PyMol to create a
> fusion protein . It is possible ? 
> I saw the command " fuse" on https://pymolwiki.org/index.php/Fuse,
>  but i don't know if is only
> for atom or it is also for amino acids ?
>
> Do you have any advice, I take anything that could help me !
>
> Best regards, 
> Saadoune Sofiane
>
>
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[PyMOL] Issues when displaying surfaces of two objects in two distinct display grids

[Vedat Durmaz]

Hi altogether, 

using Pymol open source 2.4, I'm trying to simultaneously display two
objects (OB1 & OB2) side-by-side in a grid (>Display>Grid>By object). So
I have one object (OB1) on the left part and one (OB2) on the right.

Now, in order to have two surfaces on the left covering different areas
of the protein, I need to partially duplicate the object on the left
(OB1). Both surfaces on the left are shown properly.

But if I do the same with the second object (OB2, on the right part of
the screen), I run into issues: for none of the objects created as
duplicates (copies) from OB2 I am able to display the corresponding
surface. For the original object (OB2) it works. But this is not what I
want.

Does anyone know what's going on and how to circumvent this problem?

Many thanks in advance & best wishes,

Vedat




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