[PyMOL] movie in pymol
Dear users, I would like to create a movie using Pymol between two different conformations (structures) of a protein 1NL3_coli and 1MN6coli. I read this can be done with rigimol. I am giving the following commands and getting an error when giving the following command > rigimol.morph ( "m_in", "m_out", refinement=5, async=1) What do I have to do for this? I am pasting the sequence of all the commands P.S. I also aligned the two structures. Thank you in advance very much Georgios Gkouridis Post-doc RUG/Single molecule microscopy The Netherlands PyMOL>create m_in, 1NL3_coli, 1, 1 Selector: found 13230 atoms. Executive: object "m_in" created. PyMOL>create m_in, 1MN6coli, 1, 2 Selector: found 13296 atoms. PyMOL>rigimol.morph ( "m_in", "m_out", refinement=5, async=1) Traceback (most recent call last): File "C:\Program Files\PyMOL\PyMOL/modules\pymol\parser.py", line 464, in parse exec(layer.com2+"\n",self.pymol_names,self.pymol_names) File "", line 1, in NameError: name 'rigimol' is not defined This message was sent using IMBB - WebMail. -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] (no subject)
This message was sent using IMBB - WebMail. -- Get your Android app more play: Bring it to the BlackBerry PlayBook in minutes. BlackBerry App World™ now supports Android™ Apps for the BlackBerry® PlayBook™. Discover just how easy and simple it is! http://p.sf.net/sfu/android-dev2dev ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] Pymol movie
I want to make a movie with two objects.One object should remain static(A) while the other(B) should rotate 90 degrees in x-axis. I cannot keep object A immobile. The commands i am using are: > show surface,A > show surface,B > super B,A > mset 1x100 > frame 1 > scene 001,store > mview store,scene=001 > frame 100 > hide surface,A > turn x,90 but i see object A turned > show surface,A > scene=002,store > mview store,scene=002 mplay and i see both objects to rotate 90 degrees with respect to their-axis. How can i solve this problem? Guridis Georgios Post-doc IMBB,Crete,Greece This message was sent using IMBB - WebMail. -- Get your Android app more play: Bring it to the BlackBerry PlayBook in minutes. BlackBerry App World™ now supports Android™ Apps for the BlackBerry® PlayBook™. Discover just how easy and simple it is! http://p.sf.net/sfu/android-dev2dev ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
