Re: [PyMOL] Increase sphere size for heavy element

2013-02-26 Thread Thomas Holder
Hi Martin,

PyMOL> alter elem W, vdw=2.0
PyMOL> rebuild

Cheers,
  Thomas

Martin Hediger wrote, On 02/26/13 08:38:
> Hi PyMOL users
> 
> If I display these coordinates
> 
> HETATM   38  C   LIG 2   1.535   2.288  -4.156  1.00  0.00   C
> HETATM   39  C   LIG 2   2.284   1.535  -3.066  1.00  0.00   C
> HETATM   40  O   LIG 2   3.406   2.362  -2.714  1.00  0.00   O
> HETATM   41  C   LIG 2   1.426   1.234  -1.850  1.00  0.00   C
> HETATM   42  S   LIG 2  -0.260   0.689  -2.100  1.00  0.00   S
> HETATM   43  C   LIG 2   1.886   1.450  -0.593  1.00  0.00   C
> HETATM   44  S   LIG 2   0.838   1.262   0.813  1.00  0.00   S
> HETATM   45  C   LIG 2   3.318   1.872  -0.336  1.00  0.00   C
> HETATM   46  C   LIG 2   4.139   1.803  -1.624  1.00  0.00   C
> HETATM   47  W   LIG 2  -1.132  -0.004   0.041  1.00  0.00   W
> HETATM   48  O   LIG 2   0.155  -1.665   0.118  1.00  0.00   O
> HETATM   49  C   LIG 2   0.721  -3.870  -0.567  1.00  0.00   C
> HETATM   50  C   LIG 2   0.384  -2.594  -0.826  1.00  0.00   C
> HETATM   51  C   LIG 2  -5.606  -3.611  -1.000  1.00  0.00   C
> HETATM   52  O   LIG 2  -6.664  -4.080  -0.564  1.00  0.00   O
> HETATM   53  N   LIG 2  -4.607  -4.417  -1.426  1.00  0.00   N
> 
> using "Preset/Ball-and-stick", the tungsten atom is drawn with a very 
> small radius. Can this radius be increased?
> 
> Thanks
> Martin

-- 
Thomas Holder
PyMOL Developer
Schrödinger Contractor

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[PyMOL] Increase sphere size for heavy element

2013-02-25 Thread Martin Hediger
Hi PyMOL users

If I display these coordinates

HETATM   38  C   LIG 2   1.535   2.288  -4.156  1.00  0.00   C
HETATM   39  C   LIG 2   2.284   1.535  -3.066  1.00  0.00   C
HETATM   40  O   LIG 2   3.406   2.362  -2.714  1.00  0.00   O
HETATM   41  C   LIG 2   1.426   1.234  -1.850  1.00  0.00   C
HETATM   42  S   LIG 2  -0.260   0.689  -2.100  1.00  0.00   S
HETATM   43  C   LIG 2   1.886   1.450  -0.593  1.00  0.00   C
HETATM   44  S   LIG 2   0.838   1.262   0.813  1.00  0.00   S
HETATM   45  C   LIG 2   3.318   1.872  -0.336  1.00  0.00   C
HETATM   46  C   LIG 2   4.139   1.803  -1.624  1.00  0.00   C
HETATM   47  W   LIG 2  -1.132  -0.004   0.041  1.00  0.00   W
HETATM   48  O   LIG 2   0.155  -1.665   0.118  1.00  0.00   O
HETATM   49  C   LIG 2   0.721  -3.870  -0.567  1.00  0.00   C
HETATM   50  C   LIG 2   0.384  -2.594  -0.826  1.00  0.00   C
HETATM   51  C   LIG 2  -5.606  -3.611  -1.000  1.00  0.00   C
HETATM   52  O   LIG 2  -6.664  -4.080  -0.564  1.00  0.00   O
HETATM   53  N   LIG 2  -4.607  -4.417  -1.426  1.00  0.00   N

using "Preset/Ball-and-stick", the tungsten atom is drawn with a very 
small radius. Can this radius be increased?

Thanks
Martin

--
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Download AppDynamics Lite for free today:
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