> I have one object showing the surface of a protein and another object showing
> a ligand inside the protein.
> Is it possible to use the clip command to define different clipping planes
> for the 2 objects.
> I want so "cut" the proteinsurface using clip, but the Ligand inside the
> protein should not be clipped, but displayed completely.
I assume that PyMOL's clipping planes are simply OpenGL clipping planes,
in which case the answer is "no". They're handled in hardware, not by the
application.
-Nat