Hi,
You can use the pair-ftt function to better overlay the ligands.
You can also display the torsion angles:
In 3-button editing mode, hold control down (PC) and right click on the bond in
question.
Not sure how to do this command line
Hope this helps
J
From: puneet garg
Sent: Friday, 12 October 2018 10:34 AM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Comparing same ligands from different proteins
Hi,
I have two proteins with same oligosacharide (triose) bound to them. I want to
compare the superposition of the bound ligands. When I superpose the proteins,
the ligands superpose partially. Is there any way I can calculate all the
torsion angle different of oligosacchrides.
Thanks
--
Puneet
Structural Biology Lab
Biotechnology Dept.
IIT Madras
Chennai-600036
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