Hi Ben,
Thanks for finding this. A colleague looked into this and says it's
fixable. So, we'll have a fix out soon. This is a 10.5-specific
numpy issue. Our update release is planned to follow soon to clear up
a few small issues.
Cheers,
-- Jason
On Thu, Mar 24, 2011 at 3:42 PM, Ben Eisenbraun
b...@hkl.hms.harvard.edu wrote:
Hi Jason et al,
We just added PyMOL 1.4 to our software environment, and it looks like
Numpy doesn't want to run on 10.5.8 machines:
PyMOLimport numpy
Traceback (most recent call last):
File /programs/m/pymol/1.4/MacPyMOL.app/pymol/modules/pymol/parser.py,
line 260, in parse
exec(layer.com2+\n,self.pymol_names,self.pymol_names)
File string, line 1, in module
File
/programs/m/pymol/1.4/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/numpy/__init__.py,
line 136, in module
import add_newdocs
File
/programs/m/pymol/1.4/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/numpy/add_newdocs.py,
line 9, in module
from numpy.lib import add_newdoc
File
/programs/m/pymol/1.4/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/numpy/lib/__init__.py,
line 4, in module
from type_check import *
File
/programs/m/pymol/1.4/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/numpy/lib/type_check.py,
line 8, in module
import numpy.core.numeric as _nx
File
/programs/m/pymol/1.4/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/numpy/core/__init__.py,
line 5, in module
import multiarray
ImportError:
dlopen(/programs/m/pymol/1.4/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/numpy/core/multiarray.so,
2): no suitable image found. Did find:
/programs/m/pymol/1.4/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/numpy/core/multiarray.so:
unknown required load command 0x8022
There's some info about this error in this thread on Xcode-users:
http://lists.apple.com/archives/Xcode-users/2009/Oct/msg00514.html
And a page about the compressed linkedit loader commands which are the root
cause here:
http://networkpx.blogspot.com/2009/09/about-lcdyldinfoonly-command.html
The fix is not entirely clear to me by looking at those sources. It looks
like you'll have to experiment a bit if you want to continue to support
10.5 users.
-ben
--
| Ben Eisenbraun
| SBGrid Consortium | http://sbgrid.org |
| Harvard Medical School | http://hms.harvard.edu |
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