Re: [PyMOL] Regarding electrostatic potential mapping
Hi Soumya, can you send me (off-list) the map file and pdb file? Cheers, Thomas Soumya Lipsa Rath wrote, On 12/29/12 13:41: Dear Users, I am trying to calculate the electrostatic potential of my protein using Delphi software. However, when I load it to pymol, I see the red colour at the centre and blue in the rest of the part even if I vary the scale. It appears to me as if it is coloring based on the distance from the centre. These are the steps after loading it to pymol: 1) load myfile.pdb 2) load myfile.phi, map 3) ramp_new e_lvl, map, 4) set surface_color, e_lvl, myfile I have attached the Delphi log file for reference also. I would really appreciate any help in this regard. Thanks, Soumya -- Thomas Holder PyMOL Developer Schrödinger Contractor -- Master HTML5, CSS3, ASP.NET, MVC, AJAX, Knockout.js, Web API and much more. Get web development skills now with LearnDevNow - 350+ hours of step-by-step video tutorials by Microsoft MVPs and experts. SALE $99.99 this month only -- learn more at: http://p.sf.net/sfu/learnmore_122812 ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] Regarding electrostatic potential mapping
Dear Users, I am trying to calculate the electrostatic potential of my protein using Delphi software. However, when I load it to pymol, I see the red colour at the centre and blue in the rest of the part even if I vary the scale. It appears to me as if it is coloring based on the distance from the centre. These are the steps after loading it to pymol: 1) load myfile.pdb 2) load myfile.phi, map 3) ramp_new e_lvl, map, 4) set surface_color, e_lvl, myfile I have attached the Delphi log file for reference also. I would really appreciate any help in this regard. Thanks, Soumya x1.log Description: Binary data -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. SALE $99.99 this month only -- learn more at: http://p.sf.net/sfu/learnmore_122912___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
