Re: [PyMOL] model refuses to display surface and mesh

[Warren DeLano]

Add:

cmd.set("surface_mode",1)
cmd.set("mesh_mode",1)

> -Original Message-
> From: petr benes [mailto:xbe...@centrum.cz]
> Sent: Friday, March 06, 2009 7:21 PM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] model refuses to display surface and mesh
> 
> Dear pyMol users,
>  I am trying to load a simple model using python into pymol using the
> following script. All works perfectly until i click for this new model to
> display its surface or mesh. The other thing is that in older versions
> 0.99rc the surface and mesh were correctly displayed, however this works
> no longer with 1.1 version
> Does anyone know how to fix the issue? Thanks. Petr Benes
> 
> from chempy.models import Indexed
> from chempy import Bond, Atom
> from whrandom import random
> from pymol import cmd
> 
> model = Indexed()
> 
> # create some atoms
> 
> for a in range(1,11):
>    at = Atom()
>    at.name = "X%02d"%a
>    at.coord = [random()*5,random()*5,random()*5]
>    at.vdw = 2.0
>    model.atom.append(at)
> 
> # now create some bonds
> 
> for a in range(1,10):
>    bd = Bond()
>    bd.index = [a-1,a] # zero-based indices!
>    model.bond.append(bd)
> 
> # now load and label
> 
> cmd.load_model(model,"example")
> cmd.label("example","name")
> 
> 
> 
> 
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[PyMOL] model refuses to display surface and mesh

[petr benes]

Dear pyMol users,
 I am trying to load a simple model using python into pymol using the following 
script. All works perfectly until i click for this new model to display its 
surface or mesh. The other thing is that in older versions 0.99rc the surface 
and mesh were correctly displayed, however this works no longer with 1.1 version
Does anyone know how to fix the issue? Thanks. Petr Benes

from chempy.models import Indexed
from chempy import Bond, Atom
from whrandom import random
from pymol import cmd

model = Indexed()

# create some atoms

for a in range(1,11):
   at = Atom()
   at.name = "X%02d"%a
   at.coord = [random()*5,random()*5,random()*5]
   at.vdw = 2.0
   model.atom.append(at)

# now create some bonds

for a in range(1,10):
   bd = Bond()
   bd.index = [a-1,a] # zero-based indices!
   model.bond.append(bd)

# now load and label

cmd.load_model(model,"example")
cmd.label("example","name")