Hi Thomas,
Thanks! indeed it does the job!
Cheers
Afonso
On Tue, Sep 4, 2012 at 3:00 PM, Thomas Holder
wrote:
> Hi Afonso,
>
> this should do the job:
> http://pymolwiki.org/index.php/Spectrumany
>
> Example:
> PyMOL> run spectrumany.py
> PyMOL> spectrumany resi, lime green forest, chain A+C+E
> PyMOL> spectrumany resi, lightblue blue density, chain B+D+F
>
> Hope that helps.
>
> Cheers,
> Thomas
>
> Afonso Duarte wrote, On 09/04/12 15:15:
>>
>> Dear All,
>>
>> I'm using Pymol1.4 in windows and I have a protein build-up by 6
>> domains organized in pairs in an anti-parallel fashion ( i.e. if A and
>> V are the domains: AV AV AV) (the domains are structurally homologous
>> but the sequence is different).
>>
>> I want to color the two domains in different colors (i.e. A green and
>> V blue) but then I want this colors to be in a gradient according to
>> the sequence (i.e. A should be colored from light green to dark green
>> and V colored from light blue to dark blue).
>>
>> As I understood one cannot create new color schemes in the spectrum
>> command (if yes I would just color them individually) am i right?
>> For that reason I'm thinking of creating a ramp that I would color
>> with that color scheme, for this i need to create a selection
>> containing the residue number of the residues involved. Is there a way
>> to directly create a list of residue number in Pymol ?
>>
>> Best
>>
>> Afonso
>>
>> ###
>> Afonso Duarte
>> ITQB-UNL
>> Portugal
>
>
> --
> Thomas Holder
> MPI for Developmental Biology
> Spemannstr. 35
> D-72076 Tübingen
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