Re: About get_axes() in Pandas 1.2.3
>I can help you narrow it down a bit. The problem actually occurs inside
>this function call somehow. You can verify this by doing this:
>
>
>fig,axes = plt.subplots(2,1, figsize=(20, 15))
>
>print ("axes[0].get_figure()=",axes[0].get_figure())
>
>You'll find that get_figure() is returning None, when it should be
>returning Figure(2000x1500). So plt.subplots is not doing something
>properly which was corrected at some point. Oddly enough, with pandas
>1.1.4 and matplotlib 3.2.2 (which is what my system has by default),
>there is no error, although the graph is blank.
>
>In my venv, when I upgrade matplotlib from 3.3.4 to 3.5, the problem
>also goes away. 3.4.0 also works.
>
>Honestly your solution is going to be to provide a virtual environment
>with your script. That way you can bundle the appropriate dependencies
>without modifying anything on the host system.
Thanks for the feedback. You are right.
I agree that virtualenv is the most safest method at this time.
Regards,
Mahmood
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Re: About get_axes() in Pandas 1.2.3
On 11/22/21 2:03 AM, Mahmood Naderan via Python-list wrote:
> Hi
>
> I asked a question some days ago, but due to the lack of minimal
> producing code, the topic got a bit messy. So, I have decided to ask
> it in a new topic with a clear minimum code.
> import pandas as pd
> import csv,sys
> import matplotlib
> import matplotlib.pyplot as plt
>
> df = pd.read_csv('test.batch.csv')
> print(df)
>
> print("matplotlib version = ", matplotlib.__version__)
> print("pandas version = ", pd.__version__)
> print("sys version", sys.version_info)
>
> fig,axes = plt.subplots(2,1, figsize=(20, 15))
^
I can help you narrow it down a bit. The problem actually occurs inside
this function call somehow. You can verify this by doing this:
fig,axes = plt.subplots(2,1, figsize=(20, 15))
print ("axes[0].get_figure()=",axes[0].get_figure())
You'll find that get_figure() is returning None, when it should be
returning Figure(2000x1500). So plt.subplots is not doing something
properly which was corrected at some point. Oddly enough, with pandas
1.1.4 and matplotlib 3.2.2 (which is what my system has by default),
there is no error, although the graph is blank.
In my venv, when I upgrade matplotlib from 3.3.4 to 3.5, the problem
also goes away. 3.4.0 also works.
Honestly your solution is going to be to provide a virtual environment
with your script. That way you can bundle the appropriate dependencies
without modifying anything on the host system.
--
https://mail.python.org/mailman/listinfo/python-list
About get_axes() in Pandas 1.2.3
Hi
I asked a question some days ago, but due to the lack of minimal producing
code, the topic got a bit messy. So, I have decided to ask it in a new topic
with a clear minimum code.
With Pandas 1.2.3 and Matplotlib 3.3.4, the following plot() functions returns
error and I don't know what is wrong with that.
import pandas as pd
import csv,sys
import matplotlib
import matplotlib.pyplot as plt
df = pd.read_csv('test.batch.csv')
print(df)
print("matplotlib version = ", matplotlib.__version__)
print("pandas version = ", pd.__version__)
print("sys version", sys.version_info)
fig,axes = plt.subplots(2,1, figsize=(20, 15))
df.columns = range(1, len(df.columns)+1) # Ignore the column header
row = df.iloc[0].astype(int) # First row in the dataframe
plt.subplot(2, 1, 1)
print("axes=", axes)
print("axes[0]=", axes[0])
print("row=", row)
ax1 = row.plot(ax=axes[0]) # Line chart <-- ERROR
ax1.set_ylabel( 'test' )
plt.subplot(2, 1, 2)
df2 = row.value_counts()
df2.reindex().plot(kind='bar', ax=axes[1]) # Histogram
plt.show()
The output is
$ cat test.batch.csv
Value,Value
10,2
5,2
10,2
$ python3 test.py
Value Value.1
0 102
1 52
2 102
matplotlib version = 3.3.4
pandas version = 1.2.3
sys version sys.version_info(major=3, minor=8, micro=10, releaselevel='final',
serial=0)
axes= [ ]
axes[0]= AxesSubplot(0.125,0.53;0.775x0.35)
row= 110
2 2
Name: 0, dtype: int64
Traceback (most recent call last):
File "test.py", line 20, in
ax1 = row.plot(ax=axes[0]) # Line chart
File
"/home/mahmood/.local/lib/python3.8/site-packages/pandas/plotting/_core.py",
line 955, in __call__
return plot_backend.plot(data, kind=kind, **kwargs)
File
"/home/mahmood/.local/lib/python3.8/site-packages/pandas/plotting/_matplotlib/__init__.py",
line 61, in plot
plot_obj.generate()
File
"/home/mahmood/.local/lib/python3.8/site-packages/pandas/plotting/_matplotlib/core.py",
line 283, in generate
self._adorn_subplots()
File
"/home/mahmood/.local/lib/python3.8/site-packages/pandas/plotting/_matplotlib/core.py",
line 483, in _adorn_subplots
all_axes = self._get_subplots()
File
"/home/mahmood/.local/lib/python3.8/site-packages/pandas/plotting/_matplotlib/core.py",
line 903, in _get_subplots
ax for ax in self.axes[0].get_figure().get_axes() if isinstance(ax, Subplot)
AttributeError: 'NoneType' object has no attribute 'get_axes'
Although the plot() crashes, I see that row and axes variables are valid. So, I
wonder what is the workaround for this code without upgrading Pandas or
Matplotlib. Any idea?
Regards,
Mahmood
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