[Qgis-user] Issue with libQt5Core when running QGI 3.22 via singularity
Hello, I'm trying to run QGIS 3.22 on an HPC cluster. Docker is not available on the cluster, but Singularity is. I created a singularity image from the official docker container documented at https://hub.docker.com/r/qgis/qgis. The command I used to create the singularity image is singularity pull docker://qgis/qgis and this created qgis_latest.sif But when I run it via Singularity, I get the error that libQt5Core.so cannot be found: [shtsai@b1-24 ~]$ singularity run qgis_latest.sif qgis --help /usr/bin/qgis: error while loading shared libraries: libQt5Core.so.5: cannot open shared object file: No such file or directory This library is available in the container, but perhaps the library path is not set up correctly for using it via Singularity: [shtsai@b1-24 ~]$ singularity run qgis_latest.sif ls -l /usr/lib/x86_64-linux-gnu/libQt5Core.so lrwxrwxrwx 1 root root 20 Jan 5 13:54 /usr/lib/x86_64-linux-gnu/libQt5Core.so -> libQt5Core.so.5.12.8 [shtsai@b1-24 ~]$ singularity run qgis_latest.sif ls -l /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.12.8 -rw-r--r-- 1 root root 5519624 Jan 5 13:54 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.12.8 Any thoughts why this error occurred and how I can resolve it? Thank you in advance. Regards, Shan-Ho Shan-Ho Tsai GACRC/EITS, University of Georgia Athens, GA 30602 ___ Qgis-user mailing list Qgis-user@lists.osgeo.org List info: https://lists.osgeo.org/mailman/listinfo/qgis-user Unsubscribe: https://lists.osgeo.org/mailman/listinfo/qgis-user
Re: [Qgis-user] Issue with libQt5Core when running QGI 3.22 via singularity
Hi Shan-ho, On Tue, 18. Jan 2022 at 18:18:31 +, Shan-ho Tsai wrote: > I'm trying to run QGIS 3.22 on an HPC cluster. Docker is not available on the > cluster, but Singularity is. I created a singularity image from the official > docker container documented at https://hub.docker.com/r/qgis/qgis. The > command I used to create the singularity image is > singularity pull docker://qgis/qgis > and this created qgis_latest.sif > But when I run it via Singularity, I get the error that libQt5Core.so cannot > be found: > [shtsai@b1-24 ~]$ singularity run qgis_latest.sif qgis --help > /usr/bin/qgis: error while loading shared libraries: libQt5Core.so.5: cannot > open shared object file: No such file or directory Run strip --remove-section=.note.ABI-tag /usr/lib/x86_64-linux-gnu/libQt5Core.so.5 Jürgen -- Jürgen E. Fischer norBIT GmbH Tel. +49-4931-918175-31 Dipl.-Inf. (FH) Rheinstraße 13 Fax. +49-4931-918175-50 Software Engineer D-26506 Nordenhttps://www.norbit.de QGIS release manager (PSC) Germany IRC: jef on Libera|OFTC signature.asc Description: PGP signature ___ Qgis-user mailing list Qgis-user@lists.osgeo.org List info: https://lists.osgeo.org/mailman/listinfo/qgis-user Unsubscribe: https://lists.osgeo.org/mailman/listinfo/qgis-user
Re: [Qgis-user] Issue with libQt5Core when running QGI 3.22 via singularity
Hi Jürgen, Thank you so much for your response, that worked! Now I am seeing a new (non-fatal) error: "Couldn't load plugin 'MetaSearch' due to an error when calling its classFactory() method ModuleNotFoundError: No module named 'owsllib.ogcapi.records' " Is this a module that is missing in the docker container or perhaps singularity is somehow not finding it? Any thoughts how I can resolve this issue? (I am interested in running QGIS without a server or web services, if it matters). I really appreciate your kind help. Regards, Shan-Ho Shan-Ho Tsai GACRC/EITS, University of Georgia, Athens GA From: Qgis-user on behalf of Jürgen E. Fischer Sent: Tuesday, January 18, 2022 3:29 PM To: qgis-user@lists.osgeo.org Subject: Re: [Qgis-user] Issue with libQt5Core when running QGI 3.22 via singularity [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Hi Shan-ho, On Tue, 18. Jan 2022 at 18:18:31 +, Shan-ho Tsai wrote: > I'm trying to run QGIS 3.22 on an HPC cluster. Docker is not available on the > cluster, but Singularity is. I created a singularity image from the official > docker container documented at https://hub.docker.com/r/qgis/qgis. The > command I used to create the singularity image is > singularity pull docker://qgis/qgis > and this created qgis_latest.sif > But when I run it via Singularity, I get the error that libQt5Core.so cannot > be found: > [shtsai@b1-24 ~]$ singularity run qgis_latest.sif qgis --help > /usr/bin/qgis: error while loading shared libraries: libQt5Core.so.5: cannot > open shared object file: No such file or directory Run strip --remove-section=.note.ABI-tag /usr/lib/x86_64-linux-gnu/libQt5Core.so.5 Jürgen -- Jürgen E. Fischer norBIT GmbH Tel. +49-4931-918175-31 Dipl.-Inf. (FH) Rheinstraße 13 Fax. +49-4931-918175-50 Software Engineer D-26506 Nordenhttps://www.norbit.de QGIS release manager (PSC) Germany IRC: jef on Libera|OFTC ___ Qgis-user mailing list Qgis-user@lists.osgeo.org List info: https://lists.osgeo.org/mailman/listinfo/qgis-user Unsubscribe: https://lists.osgeo.org/mailman/listinfo/qgis-user
