Resending this with more information after registering onto the Mailing List.
I see this on 2.0.1 64 bit Ubuntu and 64 bit Windows 7 with OpenLayers plugin 
1.1.1

Install OpenLayers plugin
Create a vector layer to give a suitable lat/long based map region
Create a new OpenLayer layer, any will do.
Save As filename.qgs
Close Qgis
Reopen and open filename.qgs
Result OpenLayer layer is not listed or drawn, the first vector layer is drawn

I can see the missing layer listed in the .qgs xml

The same test on the Windows 32 bit version on XP works as expected. Reopening 
the .qgs project lists the layer and it is displayed

Regards
David


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