Re: [Rd] Wish list

2007-01-01 Thread Duncan Murdoch
A few comments thrown in, and some general comments at the bottom.

On 1/1/2007 1:28 AM, Gabor Grothendieck wrote:
 This is my 2007 New Year wishlist for R features:
 
 1. Matrix Multiplication
Enhance matrix multiplication to work with multidimensional
arrays such that the last dimension of the first multiplicand
must equal the first dimension of the second. See:
https://www.stat.math.ethz.ch/pipermail/r-devel/2006-July/038497.html
 
 2. Grid
- logical-valued function as first arg of grid.edit
- transparency under Windows (not sure if this involves grid
  or just the Windows graphics device)
- shading patterns
- more interactivity features
- safe way to get name of a grid object, e.g.
 names.vpPath - names.viewport - function(x) x$name
- safe way to get children of a grid object
 getChildren.viewport - function(x) x$children
  and the order; see:
  https://www.stat.math.ethz.ch/pipermail/r-devel/2005-June/033532.html
- facility for using a name, viewport or vpPath interchangably
  so that, for example, any of them can be specified in
  in print.trellis(..., draw.in=...) or draw.key(..., vp=...)
 
 3. Lattice.
- make panel functions generic
- allow print.trellis args to be specified in xyplot, etc.
- shading patterns (once grid implements them)
- safe way to access lattice:::getStatus and lattice:::updateList
- allow name, viewport or vpPath to be specified in draw.in=
  arg of print.trellis (and vp= arg of draw.key?)
- document parameters, i.e. those output from trellis.par.get()
- support for groups in histogram
 
 4. Higher level Windows clipboard functions.
Since R 2.3.0 R can handle non-text objects
 on the Windows clipboard.  We now need some higher
 level functionality that makes use of that
 to read in non-text from the clipboard.  For
 example, one can select a table on an HTML
 page in Internet Explorer and invoke copy
 and it will copy it to the clipboard in a
 non-text format.  If one invokes paste in
 Excel, Excel will automatically detect the
 non-text format and copy it in the expected
 way so that it appears in Excel one table
 cell per Excel cell.
 
 However, R does not currently
 support this level of integration. (Current
 workaround is to paste it into Excel and then copy
 it back out of Excel.  Excel will insert tabs between
 text that is so copied.)

R doesn't have HTML parsing built in, so this would be a fairly major 
addition.  It's a much better idea to write a package to do this.  If 
the R clipboard support is missing something that such a package would 
need, that would be a reasonable addition to R.

 
 6. Allow attributes to be associated with an environment
 variable without having them associated with the environment
 itself.  This would allow more powerful inheritance in
 the case of subclasses of environment.
 See:
   https://stat.ethz.ch/pipermail/r-devel/2006-July/038377.html
 and subsequent postings in that thread.  Any package
 that uses the list(env = whatever) idiom to define
 objects could make use of this.

As I said in that thread, this is not a good suggestion.

 7. documentation standards for packages
- NEWS/ChangeLog (also should be accessible from CRAN page for package
  and should be included in built version of package)
- package?mypackage

I don't understand the second part of this.  We already support a 
package?mypackage topic, and recommend that people put it in.  Are you 
saying packages should be rejected if they don't?  That's an awful lot 
of work you're asking other people to do.

 8. Need to be able to distinguish between ordinary missing values
 and structurally missing ones.

I think this is something that you need to do in a different way.  There 
are tons of possible semantics for what NA should mean.  I don't think 
this should be made more complicated for everyone.

 9. bidirectional pipes in Windows
 
 10. Create a log updated at a regular frequency (daily or real time)
 that tracks all changes on CRAN, e.g.
 
   Date(GMT)   Package Version Action
   2006-09-20 21:22:01 mypkg   1.0.1   new
   2006-09-20 22:00:23 mypkg2  0.2.1   updated
 
 11. make integrate generic.  Ryacas could use that.
 
 12. Remove all R CMD dependencies on the find.exe command.  find is a built
 in command in Windows and having find.exe on my path causes
 problems with other programs.

A simpler fix for this would be for you to define a wrapper for R CMD 
that installed the R tools path before executing, and uninstalls it 
afterwards.  But this is unnecessary for most people, because 
Microsoft's find.exe is pretty rarely used.

 13. Make upper/lower case of simplify/SIMPLIFY consistent on all
 apply commands and add a simplify= arg to by.

It would have been good not to introduce the inconsistency years ago, 
but it's too late to change now.

 14. better reporting of location of errors and warnings in R CMD 

Re: [Rd] Wish list

2007-01-01 Thread Charles C. Berry
On Mon, 1 Jan 2007, Duncan Murdoch wrote:

 A few comments thrown in, and some general comments at the bottom.

 On 1/1/2007 1:28 AM, Gabor Grothendieck wrote:
 This is my 2007 New Year wishlist for R features:

 1. [deleted thru 12]

 13. Make upper/lower case of simplify/SIMPLIFY consistent on all
 apply commands and add a simplify= arg to by.

 It would have been good not to introduce the inconsistency years ago,
 but it's too late to change now.


Really? The consistency issue only concerns mapply, I think.

How 'bout changing the formals of mapply to

$FUN


$...


$MoreArgs
NULL

$SIMPLIFY
simplify

$USE.NAMES
[1] TRUE

$simplify
[1] TRUE

i.e. add simplify = TRUE and change SIMPLIFY's default to 'simplify'

Then the default behavior is retained, specifying a value for 
either SIMPLIFY or simplify gives the desired behavior and SIMPLIFY takes 
precedence over simplify if both are given values. Not pretty, perhaps, 
but it does the job.

I suppose this could get one into trouble if one of the ... args is named 
'simplify', but I do not imagine that is a big deal.


 14. [rest deleted]


Charles C. Berry(858) 534-2098
  Dept of Family/Preventive Medicine
E mailto:[EMAIL PROTECTED]   UC San Diego
http://biostat.ucsd.edu/~cberry/ La Jolla, San Diego 92093-0717

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Re: [Rd] Wish list

2007-01-01 Thread Robert Gentleman


Gabor Grothendieck wrote:
 On 1/1/07, Duncan Murdoch [EMAIL PROTECTED] wrote:
 A few comments thrown in, and some general comments at the bottom.

 On 1/1/2007 1:28 AM, Gabor Grothendieck wrote:
 This is my 2007 New Year wishlist for R features:

 1. Matrix Multiplication
Enhance matrix multiplication to work with multidimensional
arrays such that the last dimension of the first multiplicand
must equal the first dimension of the second. See:
https://www.stat.math.ethz.ch/pipermail/r-devel/2006-July/038497.html

 2. Grid
- logical-valued function as first arg of grid.edit
- transparency under Windows (not sure if this involves grid
  or just the Windows graphics device)
- shading patterns
- more interactivity features
- safe way to get name of a grid object, e.g.
 names.vpPath - names.viewport - function(x) x$name
- safe way to get children of a grid object
 getChildren.viewport - function(x) x$children
  and the order; see:
  https://www.stat.math.ethz.ch/pipermail/r-devel/2005-June/033532.html
- facility for using a name, viewport or vpPath interchangably
  so that, for example, any of them can be specified in
  in print.trellis(..., draw.in=...) or draw.key(..., vp=...)

 3. Lattice.
- make panel functions generic
- allow print.trellis args to be specified in xyplot, etc.
- shading patterns (once grid implements them)
- safe way to access lattice:::getStatus and lattice:::updateList
- allow name, viewport or vpPath to be specified in draw.in=
  arg of print.trellis (and vp= arg of draw.key?)
- document parameters, i.e. those output from trellis.par.get()
- support for groups in histogram

 4. Higher level Windows clipboard functions.
Since R 2.3.0 R can handle non-text objects
 on the Windows clipboard.  We now need some higher
 level functionality that makes use of that
 to read in non-text from the clipboard.  For
 example, one can select a table on an HTML
 page in Internet Explorer and invoke copy
 and it will copy it to the clipboard in a
 non-text format.  If one invokes paste in
 Excel, Excel will automatically detect the
 non-text format and copy it in the expected
 way so that it appears in Excel one table
 cell per Excel cell.

 However, R does not currently
 support this level of integration. (Current
 workaround is to paste it into Excel and then copy
 it back out of Excel.  Excel will insert tabs between
 text that is so copied.)
 R doesn't have HTML parsing built in, so this would be a fairly major
 addition.  It's a much better idea to write a package to do this.  If
 the R clipboard support is missing something that such a package would
 need, that would be a reasonable addition to R.

 6. Allow attributes to be associated with an environment
 variable without having them associated with the environment
 itself.  This would allow more powerful inheritance in
 the case of subclasses of environment.
 See:
   https://stat.ethz.ch/pipermail/r-devel/2006-July/038377.html
 and subsequent postings in that thread.  Any package
 that uses the list(env = whatever) idiom to define
 objects could make use of this.
 As I said in that thread, this is not a good suggestion.
 
 Yes, but I disagree with that assessment and I am not the
 only one.

   Nor is Duncan alone in his.

   best wishes
 Robert

 
 7. documentation standards for packages
- NEWS/ChangeLog (also should be accessible from CRAN page for package
  and should be included in built version of package)
- package?mypackage
 I don't understand the second part of this.  We already support a
 package?mypackage topic, and recommend that people put it in.  Are you
 saying packages should be rejected if they don't?  That's an awful lot
 of work you're asking other people to do.
 
 There should be some guidelines as to what goes into mypackage-package.Rd .
 
 8. Need to be able to distinguish between ordinary missing values
 and structurally missing ones.
 I think this is something that you need to do in a different way.  There
 are tons of possible semantics for what NA should mean.  I don't think
 this should be made more complicated for everyone.

 
 Although one does not want to overcomplicate things the fact is that
 there are two issues here: structural and non-structural and trying to
 force them into a single construct is not simplifying -- rather it
 fails to model
 what is required adequately.
 
 
 9. bidirectional pipes in Windows

 10. Create a log updated at a regular frequency (daily or real time)
 that tracks all changes on CRAN, e.g.

   Date(GMT)   Package Version Action
   2006-09-20 21:22:01 mypkg   1.0.1   new
   2006-09-20 22:00:23 mypkg2  0.2.1   updated

 11. make integrate generic.  Ryacas could use that.

 12. Remove all R CMD dependencies on the find.exe command.  find is a built
 in command in Windows and having find.exe on my path causes
 problems with other 

Re: [Rd] Wish list

2007-01-01 Thread Gabor Grothendieck
On 1/1/07, Robiert Gentleman [EMAIL PROTECTED] wrote:


 Gabor Grothendieck wrote:
  On 1/1/07, Duncan Murdoch [EMAIL PROTECTED] wrote:
  A few comments thrown in, and some general comments at the bottom.
 
  On 1/1/2007 1:28 AM, Gabor Grothendieck wrote:
  This is my 2007 New Year wishlist for R features:
 
  1. Matrix Multiplication
 Enhance matrix multiplication to work with multidimensional
 arrays such that the last dimension of the first multiplicand
 must equal the first dimension of the second. See:
 https://www.stat.math.ethz.ch/pipermail/r-devel/2006-July/038497.html
 
  2. Grid
 - logical-valued function as first arg of grid.edit
 - transparency under Windows (not sure if this involves grid
   or just the Windows graphics device)
 - shading patterns
 - more interactivity features
 - safe way to get name of a grid object, e.g.
  names.vpPath - names.viewport - function(x) x$name
 - safe way to get children of a grid object
  getChildren.viewport - function(x) x$children
   and the order; see:
   https://www.stat.math.ethz.ch/pipermail/r-devel/2005-June/033532.html
 - facility for using a name, viewport or vpPath interchangably
   so that, for example, any of them can be specified in
   in print.trellis(..., draw.in=...) or draw.key(..., vp=...)
 
  3. Lattice.
 - make panel functions generic
 - allow print.trellis args to be specified in xyplot, etc.
 - shading patterns (once grid implements them)
 - safe way to access lattice:::getStatus and lattice:::updateList
 - allow name, viewport or vpPath to be specified in draw.in=
   arg of print.trellis (and vp= arg of draw.key?)
 - document parameters, i.e. those output from trellis.par.get()
 - support for groups in histogram
 
  4. Higher level Windows clipboard functions.
 Since R 2.3.0 R can handle non-text objects
  on the Windows clipboard.  We now need some higher
  level functionality that makes use of that
  to read in non-text from the clipboard.  For
  example, one can select a table on an HTML
  page in Internet Explorer and invoke copy
  and it will copy it to the clipboard in a
  non-text format.  If one invokes paste in
  Excel, Excel will automatically detect the
  non-text format and copy it in the expected
  way so that it appears in Excel one table
  cell per Excel cell.
 
  However, R does not currently
  support this level of integration. (Current
  workaround is to paste it into Excel and then copy
  it back out of Excel.  Excel will insert tabs between
  text that is so copied.)
  R doesn't have HTML parsing built in, so this would be a fairly major
  addition.  It's a much better idea to write a package to do this.  If
  the R clipboard support is missing something that such a package would
  need, that would be a reasonable addition to R.
 
  6. Allow attributes to be associated with an environment
  variable without having them associated with the environment
  itself.  This would allow more powerful inheritance in
  the case of subclasses of environment.
  See:
https://stat.ethz.ch/pipermail/r-devel/2006-July/038377.html
  and subsequent postings in that thread.  Any package
  that uses the list(env = whatever) idiom to define
  objects could make use of this.
  As I said in that thread, this is not a good suggestion.
 
  Yes, but I disagree with that assessment and I am not the
  only one.

   Nor is Duncan alone in his.

Nor am I.  Read the thread.

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Re: [Rd] Connections to https: URLs -- IE expert help needed

2007-01-01 Thread Kurt Hornik
 Duncan Temple Lang writes:

 -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA1

 Prof Brian Ripley wrote:
 I've added to R-devel the ability to use download.file() and url() to 
 https: URLs, *only* if --internet2 is used on Windows.
 
 This uses the Internet Explorer internals, and only works if the 
 certificate is accepted (so e.g. does not work for 
 https://svn.r-project.org).
 
 Now I use IE (and Windows for that matter) only when really necessary, and 
 Firefox has simple ways to permanently accept non-verifiable certificates. 
 I would be grateful if someone who is much more familiar with IE could 
 write a note explaining how to deal with this that we could add to the 
 rw-FAQ.
 
 To forestall the inevitable question: there are no plans to add https: 
 support on any other platform, but it is something that would make a nice 
 project for a user contribution.  The current internal code is based on 
 likxml2, and that AFAICS still does not have https: support.
 

 Generally (i.e. not in particular response to Brian but related to
 this thread)

With a similar disclaimer: Brian's efforts were triggered by me asking
how to use url() to read R's mailing list archive files, such as

  https://stat.ethz.ch/pipermail/r-help/2007-January.txt.gz

directly into R.  Turns out we cannot ... which, in a way, is a shame
(R cannot read its own web pages) :-(

Best
-k

 An alternative is to use RCurl and leave HTTPS and a host of other
 protocols and details to an external library (e.g. libcurl, libwww,
 etc.) and an R package that interfaces to it.

 If we want the facilities to be accessible via the connections
 interface, then we can make that API extensible by packages.  Jeff
 Horner has a proposal on that.

 Generally, it is important if R is to continue to evolve that the R
 internals become extensible by package developers so that we can do
 some new experiments and provide alternative implementations of the
 basic structures rather than being tied to the existing
 representation.  An object oriented framework underlying the R source
 code would enable this and would solve numerous problems that have
 arisen recently and I strongly suspect many more that will arise.

  D.


 - --
 Duncan Temple Lang[EMAIL PROTECTED]
 Department of Statistics  work:  (530) 752-4782
 4210 Mathematical Sciences Building   fax:   (530) 752-7099
 One Shields Ave.
 University of California at Davis
 Davis,
 CA 95616,
 USA
 -BEGIN PGP SIGNATURE-
 Version: GnuPG v1.4.3 (Darwin)

 iD8DBQFFibTh9p/Jzwa2QP4RAgBiAJ9YojjDf0DMIo9FQ7yW1MiMdANvogCfRgCX
 zci7UsavJESdidbyiCl2Xgw=
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 -END PGP SIGNATURE-

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Re: [Rd] Wish list

2007-01-01 Thread Duncan Murdoch
On 1/1/2007 1:10 PM, Gabor Grothendieck wrote:
 On 1/1/07, Duncan Murdoch [EMAIL PROTECTED] wrote:
 A few comments thrown in, and some general comments at the bottom.

 On 1/1/2007 1:28 AM, Gabor Grothendieck wrote:
 This is my 2007 New Year wishlist for R features:

 1. Matrix Multiplication
Enhance matrix multiplication to work with multidimensional
arrays such that the last dimension of the first multiplicand
must equal the first dimension of the second. See:
https://www.stat.math.ethz.ch/pipermail/r-devel/2006-July/038497.html

 2. Grid
- logical-valued function as first arg of grid.edit
- transparency under Windows (not sure if this involves grid
  or just the Windows graphics device)
- shading patterns
- more interactivity features
- safe way to get name of a grid object, e.g.
 names.vpPath - names.viewport - function(x) x$name
- safe way to get children of a grid object
 getChildren.viewport - function(x) x$children
  and the order; see:
  https://www.stat.math.ethz.ch/pipermail/r-devel/2005-June/033532.html
- facility for using a name, viewport or vpPath interchangably
  so that, for example, any of them can be specified in
  in print.trellis(..., draw.in=...) or draw.key(..., vp=...)

 3. Lattice.
- make panel functions generic
- allow print.trellis args to be specified in xyplot, etc.
- shading patterns (once grid implements them)
- safe way to access lattice:::getStatus and lattice:::updateList
- allow name, viewport or vpPath to be specified in draw.in=
  arg of print.trellis (and vp= arg of draw.key?)
- document parameters, i.e. those output from trellis.par.get()
- support for groups in histogram

 4. Higher level Windows clipboard functions.
Since R 2.3.0 R can handle non-text objects
 on the Windows clipboard.  We now need some higher
 level functionality that makes use of that
 to read in non-text from the clipboard.  For
 example, one can select a table on an HTML
 page in Internet Explorer and invoke copy
 and it will copy it to the clipboard in a
 non-text format.  If one invokes paste in
 Excel, Excel will automatically detect the
 non-text format and copy it in the expected
 way so that it appears in Excel one table
 cell per Excel cell.

 However, R does not currently
 support this level of integration. (Current
 workaround is to paste it into Excel and then copy
 it back out of Excel.  Excel will insert tabs between
 text that is so copied.)
 R doesn't have HTML parsing built in, so this would be a fairly major
 addition.  It's a much better idea to write a package to do this.  If
 the R clipboard support is missing something that such a package would
 need, that would be a reasonable addition to R.

 6. Allow attributes to be associated with an environment
 variable without having them associated with the environment
 itself.  This would allow more powerful inheritance in
 the case of subclasses of environment.
 See:
   https://stat.ethz.ch/pipermail/r-devel/2006-July/038377.html
 and subsequent postings in that thread.  Any package
 that uses the list(env = whatever) idiom to define
 objects could make use of this.
 As I said in that thread, this is not a good suggestion.
 
 Yes, but I disagree with that assessment and I am not the
 only one.

It doesn't matter how many people disagree:  what matters is achieving a 
consensus about what change is needed.  I don't think you could convince 
me that the proposal you made is the right way to solve this problem, 
and I know there are others who don't agree with the proposal I made to 
solve it.  So it is unlikely to be changed, unless someone comes up with 
a new proposal.

 7. documentation standards for packages
- NEWS/ChangeLog (also should be accessible from CRAN page for package
  and should be included in built version of package)
- package?mypackage
 I don't understand the second part of this.  We already support a
 package?mypackage topic, and recommend that people put it in.  Are you
 saying packages should be rejected if they don't?  That's an awful lot
 of work you're asking other people to do.
 
 There should be some guidelines as to what goes into mypackage-package.Rd .

There are, in the Writing R Extensions manual.

 8. Need to be able to distinguish between ordinary missing values
 and structurally missing ones.
 I think this is something that you need to do in a different way.  There
 are tons of possible semantics for what NA should mean.  I don't think
 this should be made more complicated for everyone.

 
 Although one does not want to overcomplicate things the fact is that
 there are two issues here: structural and non-structural and trying to
 force them into a single construct is not simplifying -- rather it
 fails to model
 what is required adequately.

There aren't just two types of missingness, there are hundreds.  For 
example, I might have some values missing because I couldn't 

Re: [Rd] Wish list

2007-01-01 Thread Gabor Grothendieck
  Anyone who uses batch files will use it quite a bit.  It certainly causes
  me problems on an ongoing basis and is an unacceptable conflict in
  my opinion.

 If you're using batch files, the fix I suggested is trivial for you.

The batch files could come from other programs you
are using which one does not really want to have
to figure them out and modify them.  In any case,
R should not be written in
a way which conflicts with system utilities.

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Re: [Rd] Wish list

2007-01-01 Thread Duncan Murdoch
On 1/1/2007 12:59 PM, Charles C. Berry wrote:
 On Mon, 1 Jan 2007, Duncan Murdoch wrote:
 
 A few comments thrown in, and some general comments at the bottom.

 On 1/1/2007 1:28 AM, Gabor Grothendieck wrote:
 This is my 2007 New Year wishlist for R features:

 1. [deleted thru 12]
 
 13. Make upper/lower case of simplify/SIMPLIFY consistent on all
 apply commands and add a simplify= arg to by.
 It would have been good not to introduce the inconsistency years ago,
 but it's too late to change now.

 
 Really? The consistency issue only concerns mapply, I think.

mapply and its wrapper Vectorize, and perhaps some functions in 
contributed packages.

 
 How 'bout changing the formals of mapply to
 
 $FUN
 
 
 $...
 
 
 $MoreArgs
 NULL
 
 $SIMPLIFY
 simplify
 
 $USE.NAMES
 [1] TRUE
 
 $simplify
 [1] TRUE
 
 i.e. add simplify = TRUE and change SIMPLIFY's default to 'simplify'
 
 Then the default behavior is retained, specifying a value for 
 either SIMPLIFY or simplify gives the desired behavior and SIMPLIFY takes 
 precedence over simplify if both are given values. Not pretty, perhaps, 
 but it does the job.

This allows mapply(..., simplify=TRUE), but is that really the job?  I 
think the point of consistency is to make code easier to read and write, 
and I'm not sure making this one parameter partially case-insensitive 
achieves that.  Should the same thing be done to the functions that 
currently use simplify, to achieve even more consistency?  Yecch.

 I suppose this could get one into trouble if one of the ... args is named 
 'simplify', but I do not imagine that is a big deal.

I think the reasoning behind the choice of SIMPLIFY was probably to 
avoid a clash with one of the ... args.

I'd prefer a more general solution to this problem, like what the Mac 
GUI does, and giving argument hints as a function call is being typed. 
(I think ESS may do this too, but I don't use it.)  There are lots of 
inconsistencies in R functions, and I think making the syntax looser in 
order to accept a consistent superset is not the right approach: 
instead, the editor should make it easier for a user to discover what is 
appropriate in any given context.

Duncan Murdoch

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Re: [Rd] Wish list

2007-01-01 Thread Duncan Murdoch
On 1/1/2007 7:17 PM, Gabor Grothendieck wrote:
 Anyone who uses batch files will use it quite a bit.  It certainly causes
 me problems on an ongoing basis and is an unacceptable conflict in
 my opinion.
 If you're using batch files, the fix I suggested is trivial for you.
 
 The batch files could come from other programs you
 are using which one does not really want to have
 to figure them out and modify them.  

You don't need to modify any other batch files, you just need to create 
a new batch file named R.bat as a wrapper for R.  I forget batch file 
syntax, so I'm sure this is wrong, but it would look something like this:

SAVEPATH=%PATH%
PATH=Rtools\bin;R\bin;...
R %1 %2 ...
PATH=%SAVEPATH%

  In any case,
  R should not be written in
  a way which conflicts with system utilities.

I'd guess the find that R uses predates the one that Microsoft 
invented.  Think of the R toolset as an attempt to correct the mistakes 
that Microsoft made, by making the environment more Unix-like.

Duncan Murdoch

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Re: [Rd] Connections to https: URLs -- IE expert help needed

2007-01-01 Thread Duncan Temple Lang
Kurt Hornik wrote:
  Duncan Temple Lang writes:
 
  -BEGIN PGP SIGNED MESSAGE-
  Hash: SHA1
 
  Prof Brian Ripley wrote:
  I've added to R-devel the ability to use download.file() and url() to 
  https: URLs, *only* if --internet2 is used on Windows.
  
  This uses the Internet Explorer internals, and only works if the 
  certificate is accepted (so e.g. does not work for 
  https://svn.r-project.org).
  
  Now I use IE (and Windows for that matter) only when really necessary, and 
  Firefox has simple ways to permanently accept non-verifiable certificates. 
  I would be grateful if someone who is much more familiar with IE could 
  write a note explaining how to deal with this that we could add to the 
  rw-FAQ.
  
  To forestall the inevitable question: there are no plans to add https: 
  support on any other platform, but it is something that would make a nice 
  project for a user contribution.  The current internal code is based on 
  likxml2, and that AFAICS still does not have https: support.
  
 
  Generally (i.e. not in particular response to Brian but related to
  this thread)
 
 With a similar disclaimer: Brian's efforts were triggered by me asking
 how to use url() to read R's mailing list archive files, such as
 
   https://stat.ethz.ch/pipermail/r-help/2007-January.txt.gz
 
 directly into R.  Turns out we cannot ... which, in a way, is a shame
 (R cannot read its own web pages) :-(

Indeed, it is a shame.  Although, when I process mail messages,
I use Perl's very rich collection of modules for processing
mail in so many different formats. And then I use RSPerl
to control this and get the data into R pretty quickly.
So we can do it in R and probably the delegation to 
mail-processing software is a good given the number of special
cases, etc.

And even if we had HTTPs in R, we would still want to deal with
the certificate on that page, which gets us to more details.
Which is the reason I think leaving things to libcurl,
libwww, etc. will be best as they continue to evolve
to handle new protocols and settings.

 D.

 
 Best
 -k
 
  An alternative is to use RCurl and leave HTTPS and a host of other
  protocols and details to an external library (e.g. libcurl, libwww,
  etc.) and an R package that interfaces to it.
 
  If we want the facilities to be accessible via the connections
  interface, then we can make that API extensible by packages.  Jeff
  Horner has a proposal on that.
 
  Generally, it is important if R is to continue to evolve that the R
  internals become extensible by package developers so that we can do
  some new experiments and provide alternative implementations of the
  basic structures rather than being tied to the existing
  representation.  An object oriented framework underlying the R source
  code would enable this and would solve numerous problems that have
  arisen recently and I strongly suspect many more that will arise.
 
   D.
 
 
  - --
  Duncan Temple Lang[EMAIL PROTECTED]
  Department of Statistics  work:  (530) 752-4782
  4210 Mathematical Sciences Building   fax:   (530) 752-7099
  One Shields Ave.
  University of California at Davis
  Davis,
  CA 95616,
  USA
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Re: [Rd] Wish list

2007-01-01 Thread Duncan Murdoch
Henrik Bengtsson wrote:
 On 1/2/07, Duncan Murdoch [EMAIL PROTECTED] wrote:
   
 On 1/1/2007 12:59 PM, Charles C. Berry wrote:
 
 On Mon, 1 Jan 2007, Duncan Murdoch wrote:

   
 A few comments thrown in, and some general comments at the bottom.

 On 1/1/2007 1:28 AM, Gabor Grothendieck wrote:
 
 This is my 2007 New Year wishlist for R features:

 1. [deleted thru 12]
   
 13. Make upper/lower case of simplify/SIMPLIFY consistent on all
 apply commands and add a simplify= arg to by.
   
 It would have been good not to introduce the inconsistency years ago,
 but it's too late to change now.

 
 Really? The consistency issue only concerns mapply, I think.
   
 mapply and its wrapper Vectorize, and perhaps some functions in
 contributed packages.

 
 How 'bout changing the formals of mapply to

 $FUN


 $...


 $MoreArgs
 NULL

 $SIMPLIFY
 simplify

 $USE.NAMES
 [1] TRUE

 $simplify
 [1] TRUE

 i.e. add simplify = TRUE and change SIMPLIFY's default to 'simplify'

 Then the default behavior is retained, specifying a value for
 either SIMPLIFY or simplify gives the desired behavior and SIMPLIFY takes
 precedence over simplify if both are given values. Not pretty, perhaps,
 but it does the job.
   
 This allows mapply(..., simplify=TRUE), but is that really the job?  I
 think the point of consistency is to make code easier to read and write,
 and I'm not sure making this one parameter partially case-insensitive
 achieves that.  Should the same thing be done to the functions that
 currently use simplify, to achieve even more consistency?  Yecch.
 

 Given that you want to take the step to change/remove an argument, I
 think this is a good strategy; first provide a backward compatible API
 and announce that the original argument is deprecated, and then when
 everyone had a chance to update and test dependent code, you can
 safely remove the argument.
   
Given that premise, and with the addition that at some point in the 
process using the obsolete parameter would generate a warning, I'd agree. 

But I don't see that the value of the change *in this particular case* 
is worth the effort.

Duncan Murdoch


 My $.02

 Henrik

   
 I suppose this could get one into trouble if one of the ... args is named
 'simplify', but I do not imagine that is a big deal.
   
 I think the reasoning behind the choice of SIMPLIFY was probably to
 avoid a clash with one of the ... args.

 I'd prefer a more general solution to this problem, like what the Mac
 GUI does, and giving argument hints as a function call is being typed.
 (I think ESS may do this too, but I don't use it.)  There are lots of
 inconsistencies in R functions, and I think making the syntax looser in
 order to accept a consistent superset is not the right approach:
 instead, the editor should make it easier for a user to discover what is
 appropriate in any given context.

 Duncan Murdoch

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